BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137994.3 - phase: 0
(155 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC20063 28 0.92
TC18880 similar to UP|AAR83120 (AAR83120) Chloroplast carotenoid... 27 2.0
TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine liga... 27 2.0
TC14464 weakly similar to GB|AAL56097.1|18028661|AF334030 ORF91 ... 26 2.7
BP036242 26 2.7
AV429304 26 2.7
TC17500 UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase t... 25 5.9
TC18990 similar to GB|AAM19973.1|20466103|AY098963 AT3g06050/F24... 25 5.9
BP073008 25 7.8
AV776172 25 7.8
BU494422 25 7.8
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 25 7.8
>TC20063
Length = 483
Score = 27.7 bits (60), Expect = 0.92
Identities = 19/58 (32%), Positives = 23/58 (38%)
Frame = +3
Query: 8 STPLSSGEVFRPVVSEVQAPFVQQTTPIPQTGLPFPQAAMTYSSPLTQNDKESFKTYF 65
STP + PV+S A TTP P G PF + PL+ N T F
Sbjct: 9 STPFAPEMYRGPVLSSSPAVAYPPTTPFPYPGFPFET-----NFPLSSNSFSGCSTAF 167
>TC18880 similar to UP|AAR83120 (AAR83120) Chloroplast carotenoid
epsilon-ring hydroxylase, partial (27%)
Length = 699
Score = 26.6 bits (57), Expect = 2.0
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = +1
Query: 31 QTTPIPQTGLPFPQAAMTYSSPLTQNDKESFK 62
+TTP P T P+P ++ S + +N + S K
Sbjct: 172 KTTPSPPTRKPYPLHTLSVKSSINKNSETSTK 267
>TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine ligase {Lotus
corniculatus var. japonicus;} , complete
Length = 1310
Score = 26.6 bits (57), Expect = 2.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 33 TPIPQTGLPFPQAAMTYSSPLTQ 55
TP+ +TGL FPQ + S LTQ
Sbjct: 486 TPLKKTGLLFPQRGFSSFSALTQ 418
>TC14464 weakly similar to GB|AAL56097.1|18028661|AF334030 ORF91
{Helicoverpa zea single nucleocapsid
nucleopolyhedrovirus;}, partial (32%)
Length = 981
Score = 26.2 bits (56), Expect = 2.7
Identities = 12/28 (42%), Positives = 14/28 (49%)
Frame = +2
Query: 19 PVVSEVQAPFVQQTTPIPQTGLPFPQAA 46
P S Q P ++ P P T LPFP A
Sbjct: 260 PFSSSFQLPPLRLPPPCPATALPFPSIA 343
>BP036242
Length = 525
Score = 26.2 bits (56), Expect = 2.7
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = +3
Query: 76 TAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVTMSMHLEEGVREGRLVKEN 135
T Q + L+EK + + T + +D+ V + + V EEG + LVK++
Sbjct: 6 TPQPQQQLQEKSEESLSVSTRKKVTFDSNVKTYEPVLQDEVGGLRESEEGGKVEALVKQS 185
Query: 136 VPTDRSEDEDQEVNMVKRHP 155
T S ED V +P
Sbjct: 186 -QTKSSSSEDSSVTSTGSYP 242
>AV429304
Length = 355
Score = 26.2 bits (56), Expect = 2.7
Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Frame = -2
Query: 57 DKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPN------ 110
D + K + K + + +++ HLE+ + K+FL+ L++ ++ V +
Sbjct: 276 DYKQXKVFLKGLERREHEEFVEVKEHLEDYKQEKVFLEGLERKEHEEFVEVKEHLVDYKQ 97
Query: 111 -----------NFAEMVTMSMHLEEGVREG 129
+ E V + HLE+ EG
Sbjct: 96 EKVFLEGLEHREYGEFVEVKEHLEDCKLEG 7
>TC17500 UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase type 2C,
complete
Length = 1325
Score = 25.0 bits (53), Expect = 5.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 34 PIPQTGLPFPQAAMTYSSPLT 54
P+P T L PQ AMT S+ T
Sbjct: 760 PLPNTALQSPQLAMTTSAAAT 698
>TC18990 similar to GB|AAM19973.1|20466103|AY098963 AT3g06050/F24F17_3
{Arabidopsis thaliana;}, partial (41%)
Length = 357
Score = 25.0 bits (53), Expect = 5.9
Identities = 9/24 (37%), Positives = 13/24 (53%), Gaps = 3/24 (12%)
Frame = -2
Query: 70 QWWRDFTAQIRPHLE---EKEWTK 90
+WWR + +RP E EK W +
Sbjct: 209 EWWRIWNQHLRPRCELSGEKHWVR 138
>BP073008
Length = 404
Score = 24.6 bits (52), Expect = 7.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 71 WWRDFTAQIRPHLEEK 86
W RDF + PHL EK
Sbjct: 175 WMRDFVVEKDPHLTEK 128
>AV776172
Length = 433
Score = 24.6 bits (52), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 37 QTGLPFPQAAMTYSSPLTQNDKESF 61
+ GLP P +T +SPL+ D SF
Sbjct: 156 RNGLPKPSFLLTRASPLSAVDSASF 230
>BU494422
Length = 564
Score = 24.6 bits (52), Expect = 7.8
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 78 QIRPHLEEKEWTKIFLKTLDQFYYD---NMVASAPNNFAEM-VTMSMHLEEGVREGRL 131
Q++ H+ + EW K K + YYD NM ++ E+ ++++ E+ V E +L
Sbjct: 81 QMKGHMAQLEWYKKETKDEGKGYYDSYKNMYYQRDHDVVELHKKLTIYWEKMVEEAKL 254
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 24.6 bits (52), Expect = 7.8
Identities = 11/35 (31%), Positives = 20/35 (56%)
Frame = +2
Query: 17 FRPVVSEVQAPFVQQTTPIPQTGLPFPQAAMTYSS 51
FR + EV PF++ ++P P + F ++ + SS
Sbjct: 557 FRGELMEVLEPFIKSSSPTPTSTSTFSPSSSSSSS 661
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,435,644
Number of Sequences: 28460
Number of extensions: 27622
Number of successful extensions: 158
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of query: 155
length of database: 4,897,600
effective HSP length: 83
effective length of query: 72
effective length of database: 2,535,420
effective search space: 182550240
effective search space used: 182550240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC137994.3