TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137994.2 + phase: 0 /pseudo
         (379 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10377 similar to UP|THIC_SALTI (Q8Z326) Thiamine biosynthesis ...    30  0.51
BP062814                                                               29  1.5
TC8370 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-...    28  2.5
AV409760                                                               26  9.6
BG662122                                                               26  9.6
TC13879 similar to GB|AAL49941.1|17979249|AY070475 AT3g04610/F7O...    26  9.6
TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein...    26  9.6

>TC10377 similar to UP|THIC_SALTI (Q8Z326) Thiamine biosynthesis protein
           thiC, partial (40%)
          Length = 756

 Score = 30.4 bits (67), Expect = 0.51
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
 Frame = -2

Query: 267 CCSKSRLSTPISTIS-------TTG*TQIDLIP-MKYADLFPILLERNL-VHTKAPLPVP 317
           C   S+LS  I  I        T G*+ I LI  +KY  + P+L+ + L V + AP  + 
Sbjct: 470 CQELSKLSCIICIIDGSRS*PITNG*SHIILIADVKY--VIPVLICKILFVIS*APFCMN 297

Query: 318 ARLSARYRPNLFCA---FHQGASCHDIEHCFSLKKIVQNLIPENL 359
              S  Y  + FC      Q  SC D E  ++L  +    IPENL
Sbjct: 296 GSSSGDYSCHAFCC*RNISQKNSCMDSEVIYTLFSLFNQGIPENL 162


>BP062814 
          Length = 509

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +3

Query: 270 KSRLSTPISTISTTG*TQIDLIPMKYADLFPILLERNLVHTKAPLPVPARLSARYRPNL 328
           K  +STP  T+S+T   ++  + +++A    IL +  ++  K P+P   +L A YRP L
Sbjct: 3   KKNISTPS*TVSSTD-QKVPFLRLQWA--MDILTKIVILLKKIPVP*DEQLDALYRPTL 170


>TC8370 similar to UP|Q84KA9 (Q84KA9) RING/C3HC4/PHD zinc finger-like
           protein, partial (20%)
          Length = 776

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 16  SVKSYVRVDNLQEKYNEIQREMKA-LHRKELFGI 48
           S K+  R +NL++KYNE+ R +K  L+R+   GI
Sbjct: 564 SGKTKSRSENLEKKYNELLRSLKQ*LNRRRAGGI 463


>AV409760 
          Length = 424

 Score = 26.2 bits (56), Expect = 9.6
 Identities = 12/38 (31%), Positives = 18/38 (46%)
 Frame = -2

Query: 296 ADLFPILLERNLVHTKAPLPVPARLSARYRPNLFCAFH 333
           + LFP+  ER +   +  L  P  L      +L+C FH
Sbjct: 333 SSLFPLYQERKIDQPEMNLTDPTTLETNLVHSLYCNFH 220


>BG662122 
          Length = 386

 Score = 26.2 bits (56), Expect = 9.6
 Identities = 9/17 (52%), Positives = 14/17 (81%)
 Frame = +2

Query: 339 HDIEHCFSLKKIVQNLI 355
           HDI+ CF+LK+ ++ LI
Sbjct: 236 HDIDDCFTLKREIEKLI 286


>TC13879 similar to GB|AAL49941.1|17979249|AY070475 AT3g04610/F7O18_9
           {Arabidopsis thaliana;}, partial (12%)
          Length = 684

 Score = 26.2 bits (56), Expect = 9.6
 Identities = 10/17 (58%), Positives = 13/17 (75%)
 Frame = -1

Query: 130 RLSSSNTTTTRTWPQIE 146
           R  S +TTT+RTWP+ E
Sbjct: 54  RWKSRSTTTSRTWPRAE 4


>TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein S2,
           partial (88%)
          Length = 1134

 Score = 26.2 bits (56), Expect = 9.6
 Identities = 29/104 (27%), Positives = 45/104 (42%), Gaps = 21/104 (20%)
 Frame = +1

Query: 246 KSTSTTVSGLSPCCRCYA*RQCCSKSRL-------STPISTISTTG*TQID-------LI 291
           +ST ++   L P  R  +*R C S+SR        S P S+ +TT  T          L+
Sbjct: 274 RSTRSSTCWLDPLSRTRS*RSCRSRSRPVPVSEPGSRPSSSSATTMVTSGSA*SAARKLL 453

Query: 292 P-------MKYADLFPILLERNLVHTKAPLPVPARLSARYRPNL 328
           P       +  + L P   +  +  +++P P PARL     P+L
Sbjct: 454 PPFAVGLSLLSSLLSPSGGDTGVTRSESPTPFPARLPESVVPSL 585


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.340    0.147    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,711,040
Number of Sequences: 28460
Number of extensions: 120539
Number of successful extensions: 888
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of query: 379
length of database: 4,897,600
effective HSP length: 92
effective length of query: 287
effective length of database: 2,279,280
effective search space: 654153360
effective search space used: 654153360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 56 (26.2 bits)