TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137838.2 - phase: 0 
         (137 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13184                                                                43  2e-05
BP077258                                                               28  0.43
AV767608                                                               27  1.6
TC16242 UP|Q8W538 (Q8W538) Ribosomal S15 protein (Fragment), com...    27  1.6
TC9549 weakly similar to UP|Q9S7B6 (Q9S7B6) F1C9.1 protein, part...    26  2.8
AV779548                                                               25  4.7
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep...    25  4.7
CB827487                                                               24  8.1

>TC13184 
          Length = 538

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = +3

Query: 114 PLPFEHEVEKGSAFALGLLAVKV 136
           PLPFEHEV+KGSAF +GLL +KV
Sbjct: 123 PLPFEHEVQKGSAFGVGLLGIKV 191


>BP077258 
          Length = 442

 Score = 28.5 bits (62), Expect = 0.43
 Identities = 20/93 (21%), Positives = 40/93 (42%)
 Frame = +3

Query: 14  RKGQKRKLDEELPEDRQISSAPPTADERAALLVEVANQVTVLESTFTWNEADRAAAKRAT 73
           +KG K + D +LP+   +++ PP A+ +          +  L+   T  +      +  T
Sbjct: 99  QKGLKNQ*D*QLPKQPNLNTKPPKANRQTCKNPNEPKPIKTLKELGTNQDLKLLRPQGTT 278

Query: 74  HALADLAKNEEVVNVIVEGGAIPALIKHLQAPP 106
                   + ++ + +VEG  I A+I H  + P
Sbjct: 279 STPQRRLVHIDLGHYLVEGNIICAVIPHATSLP 377


>AV767608 
          Length = 398

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 97  ALIKHLQAPPVTDCVQKPLPFEHEVEKGSAFALGLLA 133
           ALI+ LQ  P+  C    + F  E+E  SA  +GLLA
Sbjct: 211 ALIQGLQPIPICFCFLISITFLGELECNSARKVGLLA 321


>TC16242 UP|Q8W538 (Q8W538) Ribosomal S15 protein (Fragment), complete
          Length = 581

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = -3

Query: 92  GGAIPALIKHLQAPPVTDC 110
           G ++PAL  HL  PPV+ C
Sbjct: 297 GESLPALASHLVEPPVSPC 241


>TC9549 weakly similar to UP|Q9S7B6 (Q9S7B6) F1C9.1 protein, partial
          (83%)
          Length = 1560

 Score = 25.8 bits (55), Expect = 2.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 9  HCLSERKGQKRKLDEELPEDRQISSAPPTADERAALLV 46
          HC+ ER G K+  +        +++  PT++E AAL V
Sbjct: 41 HCVCER-GDKQGFESRSSHTETMTTVVPTSEEDAALSV 151


>AV779548 
          Length = 503

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = +2

Query: 88  VIVEGGAIPALIKHLQAPPVTDCVQKPLP 116
           V+ EG A+PA++   +    +D V+KP P
Sbjct: 404 VLSEGNAVPAIVATTRPEISSDDVRKPNP 490


>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
           containing protein homolog-like {Oryza sativa (japonica
           cultivar-group);} , partial (49%)
          Length = 1586

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 14/43 (32%), Positives = 23/43 (52%)
 Frame = +3

Query: 57  STFTWNEADRAAAKRATHALADLAKNEEVVNVIVEGGAIPALI 99
           S F+   +D    + A  AL +L+ N+E   +I   GA+ +LI
Sbjct: 372 SDFSACSSDPWTQEHAVTALLNLSLNDENKKLITNAGAVKSLI 500


>CB827487 
          Length = 569

 Score = 24.3 bits (51), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +3

Query: 74  HALADLAKNEEVVNVIVEGGAIPA 97
           + LA L   E + N+IV+G  IPA
Sbjct: 414 YPLAPLIPRETIKNIIVDGYEIPA 485


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,033,773
Number of Sequences: 28460
Number of extensions: 19522
Number of successful extensions: 115
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of query: 137
length of database: 4,897,600
effective HSP length: 81
effective length of query: 56
effective length of database: 2,592,340
effective search space: 145171040
effective search space used: 145171040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)