BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137831.14 + phase: 0
(429 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780140 187 3e-48
TC8203 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol... 62 2e-10
TC8917 similar to UP|AAH64262 (AAH64262) MGC76273 protein, parti... 32 0.15
TC19563 30 1.0
TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1... 30 1.0
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 30 1.0
AV776936 29 1.7
AW720070 28 2.2
TC12380 similar to GB|BAC55960.1|28071265|AB087408 actin binding... 28 2.9
AV408185 28 3.8
TC17006 similar to GB|AAP47434.1|32331813|AY164860 RTNLB33w {Gly... 27 5.0
TC11457 27 5.0
BP041951 27 8.5
TC10406 similar to UP|Q94A21 (Q94A21) AT5g15330/F8M21_220, parti... 27 8.5
BP061395 27 8.5
TC15051 similar to UP|Q41440 (Q41440) Mitochondrial processing p... 27 8.5
>AV780140
Length = 399
Score = 187 bits (475), Expect = 3e-48
Identities = 98/125 (78%), Positives = 108/125 (86%)
Frame = +3
Query: 196 EFVEGVKISLSAAALSGASNLDCDVLYLIWTIEKLQQQLDVIDRRCELSRKSAVASLHSG 255
+ VEGVKISLS A LS SNLD DVLYL WT EKLQQQLDV+DRR ELSRKSA+ASLHSG
Sbjct: 24 KIVEGVKISLSTAVLSSISNLDYDVLYLSWTTEKLQQQLDVMDRRYELSRKSALASLHSG 203
Query: 256 NRKLALRYARELKLVTQSREKCSSLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIKENK 315
N+++ALRY RELKL+TQSREKC S NRVEEV ++ DAESTK VSEAMQ+GARAIKENK
Sbjct: 204 NKEVALRYVRELKLITQSREKCLSFWNRVEEVLSIISDAESTKKVSEAMQMGARAIKENK 383
Query: 316 ISVED 320
ISVED
Sbjct: 384 ISVED 398
>TC8203 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
polyprotein, partial (96%)
Length = 1198
Score = 62.0 bits (149), Expect = 2e-10
Identities = 40/167 (23%), Positives = 92/167 (54%), Gaps = 10/167 (5%)
Frame = +2
Query: 226 TIEKLQQQLDVIDRRCELSRKSAVASLHSG-------NRKLALRYARELKLVTQSREKCS 278
T++KL + L++++++ ++ K A A + N++ A++ + +L Q E+
Sbjct: 275 TLDKLNETLEMLEKKEKVLLKKASAEVEKAKEFTRAKNKRAAIQCLKRKRLYEQQIEQLG 454
Query: 279 SLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIK--ENKISVEDVDICLRDLQESIDSQK 336
+ R+ + ++ A++T +A++ GA A+K + +++DVD + ++ E ++ K
Sbjct: 455 NFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMK 634
Query: 337 EVEKALE-QTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTS 382
++++AL + D +++++E ELEELE A E + L+ TT+
Sbjct: 635 QIQEALSAPIGAAADFDEDELEAELEELEGA---ELEEQLLQPATTA 766
>TC8917 similar to UP|AAH64262 (AAH64262) MGC76273 protein, partial (3%)
Length = 676
Score = 32.3 bits (72), Expect = 0.15
Identities = 22/74 (29%), Positives = 35/74 (46%)
Frame = +2
Query: 311 IKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTDINDEDIEEELEELELALEKE 370
IK ++ VE V +S+ VEK E+TP+ + + + E EE E+E
Sbjct: 182 IKNEEVKVEQVQ----------ESEANVEKKTEETPNEDNKSLSTLLNENEEEAKKPEEE 331
Query: 371 AQVDTLEKTTTSEE 384
Q + E+ T+EE
Sbjct: 332 VQAEPKEEKATTEE 373
>TC19563
Length = 538
Score = 29.6 bits (65), Expect = 1.0
Identities = 23/78 (29%), Positives = 40/78 (50%)
Frame = +3
Query: 322 DICLRDLQESIDSQKEVEKALEQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTT 381
D+ + L++ ++S+ E+ E+ S EDI+E L ELE+ K + +D +
Sbjct: 12 DLEMEKLRKELESENEILVQEEKEVSDIKTKIEDIKEHLSELEV---KASDLDKNLLSIK 182
Query: 382 SEEGNATLEASELLSDTL 399
S+ N L++ LL D L
Sbjct: 183 SQVQN--LDSKSLLDDLL 230
>TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1, partial
(4%)
Length = 988
Score = 29.6 bits (65), Expect = 1.0
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Frame = +2
Query: 283 RVEEVHGVVVDAESTKTVSEAMQIGARAIKENKISVEDVDICL-RDLQE---------SI 332
R +E +++ E+ K V EA+ R E ++ E+V + + R L+E ++
Sbjct: 359 RRKEAELKLIEEETAKRVEEAI----RKRVEESLNSEEVQVEIQRRLEEGRKRLIVEVAV 526
Query: 333 DSQKEVEKAL---EQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATL 389
+KE E AL + ED++ LEE +E+ + + LE+ EE L
Sbjct: 527 QLEKEKEAALIEAREKEEQARKEKEDLDRMLEENRKKIEEAQRREALEQQRREEERYREL 706
Query: 390 E 390
E
Sbjct: 707 E 709
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 29.6 bits (65), Expect = 1.0
Identities = 23/76 (30%), Positives = 38/76 (49%), Gaps = 1/76 (1%)
Frame = +1
Query: 327 DLQESIDSQKEVEKALEQTPSYTDINDEDIE-EELEELELALEKEAQVDTLEKTTTSEEG 385
++QE + ++EVE+ +E+ + +E E EE EE E +E EA+ + E E
Sbjct: 184 EVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEEEDDEPIQKLLEP 363
Query: 386 NATLEASELLSDTLSN 401
+ LL+D SN
Sbjct: 364 MGKEQIISLLADAASN 411
>AV776936
Length = 390
Score = 28.9 bits (63), Expect = 1.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -3
Query: 150 ESHWNSSCIITMKKFQE---ICGGPDEASVMLRYLSGCGTTQYLSVL 193
ES WNSSC F E CG P +++ C T Y+ VL
Sbjct: 244 ESMWNSSCFKDTDVFGE*NSCCGFP-------MFMAACSTVTYMQVL 125
>AW720070
Length = 484
Score = 28.5 bits (62), Expect = 2.2
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = +1
Query: 343 EQTPSYTDINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATLEASELLSDTLSNL 402
E Y+D +E+ EEE EE E +E + T + EE +++ S + +L
Sbjct: 79 EAVKGYSDSREEEEEEEEEEEEEEAGEEGIITTTREEEEEEEESSSKHHCPFSSPSNFSL 258
Query: 403 KLSDRPVGKSRTTH 416
S + TH
Sbjct: 259 SSSSPSITDYNNTH 300
>TC12380 similar to GB|BAC55960.1|28071265|AB087408 actin binding protein
{Arabidopsis thaliana;} , partial (9%)
Length = 800
Score = 28.1 bits (61), Expect = 2.9
Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
Frame = +1
Query: 303 AMQIGARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTD-INDEDIEEELE 361
A I A +K+ + + + D S Q E EQ S+TD IN+ED EEE E
Sbjct: 352 AASIAAFTVKQLNVKSPNSE---NDEARSRKHQDEEGTEEEQFKSFTDAINEEDSEEEEE 522
Query: 362 ELELAL 367
+ E+ L
Sbjct: 523 KEEVKL 540
>AV408185
Length = 352
Score = 27.7 bits (60), Expect = 3.8
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -2
Query: 350 DINDEDIEEELEELELALEKEAQVDTLEKTTTSEEGNATLEASELLSDTLSNL 402
++ D++ + E + LELA E E +T E +EG E ++ ++ +S++
Sbjct: 276 ELRDDEADGEEDALELAAEHEVAEETAEADEDWDEGYPGEEVADAVAALVSDV 118
>TC17006 similar to GB|AAP47434.1|32331813|AY164860 RTNLB33w {Glycine max;}
, partial (98%)
Length = 1088
Score = 27.3 bits (59), Expect = 5.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 31 GQRSDWQPNFIFWRNLIIKIATHFGFLLIKPSQVKNDWFNRGGLTPLCI 79
G++S P F+ + I+ IAT GF + + +V D G L P +
Sbjct: 433 GRKSSKVPRFVLPEDFIVNIATAVGFEVNRGLRVLQDASCGGNLKPFLL 579
>TC11457
Length = 629
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/42 (33%), Positives = 19/42 (44%)
Frame = -1
Query: 276 KCSSLLNRVEEVHGVVVDAESTKTVSEAMQIGARAIKENKIS 317
KC L + HG A K S A+Q G R E+++S
Sbjct: 593 KCKCFLQSISNQHGFSFSAGLLKRSSLALQTGQRGCFESQVS 468
>BP041951
Length = 475
Score = 26.6 bits (57), Expect = 8.5
Identities = 16/60 (26%), Positives = 30/60 (49%)
Frame = -2
Query: 308 ARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYTDINDEDIEEELEELELAL 367
++ + N++ +DV LR+ E+ E TDI+DED+E+ L+ +L +
Sbjct: 462 SKPVNVNEMEEDDVLALLRN-----------EETAEDKMIQTDISDEDLEKLLDRSDLVI 316
>TC10406 similar to UP|Q94A21 (Q94A21) AT5g15330/F8M21_220, partial (57%)
Length = 986
Score = 26.6 bits (57), Expect = 8.5
Identities = 23/68 (33%), Positives = 29/68 (41%)
Frame = +3
Query: 356 IEEELEELELALEKEAQVDTLEKTTTSEEGNATLEASELLSDTLSNLKLSDRPVGKSRTT 415
+ E E LEL EA+V E A A+ L +T SN L D P+ R+T
Sbjct: 372 VHECEENLELLFPLEAEVVQSTSLPEHESRPAVDNATNALPETSSN--LGDEPMYLYRST 545
Query: 416 HAASEGHK 423
AA K
Sbjct: 546 LAAMRAIK 569
>BP061395
Length = 326
Score = 26.6 bits (57), Expect = 8.5
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -3
Query: 345 TPSYTDINDEDIEEE 359
TP +TD+++ED+EEE
Sbjct: 324 TPPHTDMDEEDVEEE 280
>TC15051 similar to UP|Q41440 (Q41440) Mitochondrial processing peptidase ,
partial (52%)
Length = 956
Score = 26.6 bits (57), Expect = 8.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 42 FWRNLIIKIATHFG 55
FWRNL++KI H G
Sbjct: 804 FWRNLLLKIILHLG 845
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,096,861
Number of Sequences: 28460
Number of extensions: 73655
Number of successful extensions: 393
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of query: 429
length of database: 4,897,600
effective HSP length: 93
effective length of query: 336
effective length of database: 2,250,820
effective search space: 756275520
effective search space used: 756275520
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC137831.14