TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137829.8 - phase: 0 
         (123 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP064886                                                              198  3e-52
TC18570 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (5%)            156  8e-40
TC11078 similar to UP|Q40451 (Q40451) DNA-binding protein, parti...    28  0.59
BP043794                                                               27  0.77
TC8388 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferase ...    26  1.7
TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin at...    26  2.2
TC15081 weakly similar to GB|AAH45981.1|28279210|BC045981 vacuol...    25  2.9
TC10506 similar to UP|Q9X5B4 (Q9X5B4) Lactoferrin-binding protei...    25  3.8
AV779993                                                               24  6.5
TC14729 homologue to UP|Q8W590 (Q8W590) At2g32080/F22D22.17, par...    24  6.5
TC8327 UP|VATL_PHAAU (O22552) Vacuolar ATP synthase 16 kDa prote...    24  6.5
TC17126 similar to UP|Q9FGX6 (Q9FGX6) Gb|AAF36742.1, partial (64%)     24  8.5
BP056434                                                               24  8.5

>BP064886 
          Length = 473

 Score =  198 bits (503), Expect = 3e-52
 Identities = 96/107 (89%), Positives = 102/107 (94%)
 Frame = +3

Query: 4   NNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQKF 63
           NNWRPNQGAEPNMDTSDWRG LQPESRQRIVNKIMDTLKRHLPVSGQEGL ELRKIAQ+F
Sbjct: 153 NNWRPNQGAEPNMDTSDWRGLLQPESRQRIVNKIMDTLKRHLPVSGQEGLQELRKIAQRF 332

Query: 64  EDKIYTAATSQSDYLRKISLKMLTMETKSQGTIANNIPPNQVGPSNQ 110
           E+KI+TAATSQSDYLRKISLKMLTMETKSQGT+ NNI  NQVGPS++
Sbjct: 333 EEKIFTAATSQSDYLRKISLKMLTMETKSQGTMXNNIQSNQVGPSSK 473


>TC18570 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (5%)
          Length = 404

 Score =  156 bits (395), Expect = 8e-40
 Identities = 75/80 (93%), Positives = 78/80 (96%)
 Frame = -1

Query: 4   NNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQKF 63
           NNWRPNQGAEPNMDTSDWRG LQPESRQRIVNKIMDTLKRHLPVSGQEGL ELRKIAQ+F
Sbjct: 242 NNWRPNQGAEPNMDTSDWRGLLQPESRQRIVNKIMDTLKRHLPVSGQEGLQELRKIAQRF 63

Query: 64  EDKIYTAATSQSDYLRKISL 83
           E+KI+TAATSQSDYLRKISL
Sbjct: 62  EEKIFTAATSQSDYLRKISL 3


>TC11078 similar to UP|Q40451 (Q40451) DNA-binding protein, partial (16%)
          Length = 507

 Score = 27.7 bits (60), Expect = 0.59
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +3

Query: 98  NNIPPNQVGPSNQPPYPGLHLRAL 121
           +NIP N   P+N PPY  +  RA+
Sbjct: 159 SNIPINSSAPANHPPYAEMIYRAI 230


>BP043794 
          Length = 490

 Score = 27.3 bits (59), Expect = 0.77
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 15 NMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQKFEDKIYTAATSQ 74
          N+  S  R     E  QR    ++  L+R +   GQ+ +  L    ++ E+  YTA + +
Sbjct: 2  NLSGSSTRTTKMTEIIQRGCKNVISKLQRRIDKDGQQVVPLLTAFLKRIENSGYTAGSGK 181

Query: 75 SDY-LRKISLKMLTME 89
          +   LRKI  ++  +E
Sbjct: 182TLLDLRKIDQRIDRLE 229


>TC8388 similar to UP|Q8GUA8 (Q8GUA8) Ornithine aminotransferase  ,
          partial (30%)
          Length = 675

 Score = 26.2 bits (56), Expect = 1.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 49 GQEGLHELRKIAQKFEDKI 67
          G+E L++LRKI QKF D +
Sbjct: 56 GEELLNQLRKIQQKFPDHV 112


>TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment
           subunit precursor, partial (3%)
          Length = 1235

 Score = 25.8 bits (55), Expect = 2.2
 Identities = 8/18 (44%), Positives = 13/18 (71%)
 Frame = -2

Query: 97  ANNIPPNQVGPSNQPPYP 114
           ++++PP+Q  P N PP P
Sbjct: 421 SSSLPPHQTSPENPPPPP 368


>TC15081 weakly similar to GB|AAH45981.1|28279210|BC045981 vacuolar protein
           sorting 29 {Danio rerio;} , complete
          Length = 1063

 Score = 25.4 bits (54), Expect = 2.9
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = +1

Query: 94  GTIANNIPPNQVGPSNQ 110
           GT+ NN PPN++ P+ Q
Sbjct: 37  GTLRNNQPPNRLNPNPQ 87


>TC10506 similar to UP|Q9X5B4 (Q9X5B4) Lactoferrin-binding protein, partial
           (3%)
          Length = 521

 Score = 25.0 bits (53), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = -2

Query: 8   PNQGAEPNMDTSDWRGQLQ 26
           PNQG E   D +D  GQ+Q
Sbjct: 409 PNQGFEVEFDENDMSGQIQ 353


>AV779993 
          Length = 342

 Score = 24.3 bits (51), Expect = 6.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 103 NQVGPSNQPPYPGLHLRALA 122
           +Q+G SNQ    G+HLR LA
Sbjct: 278 DQLGGSNQVGEGGIHLRVLA 337


>TC14729 homologue to UP|Q8W590 (Q8W590) At2g32080/F22D22.17, partial (51%)
          Length = 749

 Score = 24.3 bits (51), Expect = 6.5
 Identities = 18/67 (26%), Positives = 30/67 (43%)
 Frame = -1

Query: 7   RPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQKFEDK 66
           +P    E N D         P SR  + N  + T +  L +  ++ +  L+++AQK   +
Sbjct: 464 KPGNAGERNDDGG-------PRSRSLLRNLEVATARILLQIEVEQLVLHLQRLAQKLHIR 306

Query: 67  IYTAATS 73
             TAA S
Sbjct: 305 TSTAAAS 285


>TC8327 UP|VATL_PHAAU (O22552) Vacuolar ATP synthase 16 kDa proteolipid
           subunit  , complete
          Length = 889

 Score = 24.3 bits (51), Expect = 6.5
 Identities = 14/61 (22%), Positives = 26/61 (41%), Gaps = 5/61 (8%)
 Frame = -2

Query: 2   VTNNWRPNQGAEPNMDTSDWRGQLQPESRQRI-----VNKIMDTLKRHLPVSGQEGLHEL 56
           +TNN   + G EP+      RG+++   ++ +     VN   D    +  ++ Q   H  
Sbjct: 450 ITNNTNSHAGREPSKPAGKTRGEMRITIKEVVRFGLRVNSSTDNNSNNKSINTQNSSHNN 271

Query: 57  R 57
           R
Sbjct: 270 R 268


>TC17126 similar to UP|Q9FGX6 (Q9FGX6) Gb|AAF36742.1, partial (64%)
          Length = 773

 Score = 23.9 bits (50), Expect = 8.5
 Identities = 10/36 (27%), Positives = 17/36 (46%)
 Frame = +2

Query: 27  PESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQK 62
           PE R  I   + D +K H P+S       ++++  K
Sbjct: 224 PEQRATITRVLFDIVKEHGPISVPNTWERVKEVGLK 331


>BP056434 
          Length = 485

 Score = 23.9 bits (50), Expect = 8.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 87  TMETKSQGTIANNIPPNQVGPSNQPPYP 114
           T+ T    ++  +IPP+ + P   PP+P
Sbjct: 73  TLTTSRVTSLVPSIPPSLL*PHRAPPHP 156


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,925,182
Number of Sequences: 28460
Number of extensions: 19720
Number of successful extensions: 108
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of query: 123
length of database: 4,897,600
effective HSP length: 79
effective length of query: 44
effective length of database: 2,649,260
effective search space: 116567440
effective search space used: 116567440
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)