TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137826.3 - phase: 0 /pseudo
         (1546 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU089582                                                               33  0.004
TC17365 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (19%)       31  1.7
TC17525 similar to UP|O82624 (O82624) T9A4.14 protein, partial (...    29  5.0
TC14639 weakly similar to GB|AAM91068.1|22136564|AY129482 AT5g11...    29  5.0

>AU089582 
          Length = 383

 Score = 33.1 bits (74), Expect(2) = 0.004
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 1359 GHWDKFLTLCEFSYNNNYTLS 1379
            G WD++L+L EF+YNN+Y  S
Sbjct: 249  GSWDQYLSLMEFAYNNSYRSS 311



 Score = 25.4 bits (54), Expect(2) = 0.004
 Identities = 9/22 (40%), Positives = 15/22 (67%)
 Frame = +1

Query: 1332 SSNGWTIRENNPSVRGHIEGMC 1353
            SSN W++RE+   +RG+   +C
Sbjct: 169  SSN*WSVREDYSDLRGYASCLC 234


>TC17365 similar to UP|Q8GUU2 (Q8GUU2) RES protein, partial (19%)
          Length = 364

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/35 (45%), Positives = 18/35 (50%)
 Frame = -2

Query: 435 PASNDKNSRGHPRGW*GGNHRGCEGRENGNVGRGA 469
           PA   +  RG  RGW  G+HRG      G V RGA
Sbjct: 210 PARKGRGGRGGARGWEVGSHRG----GGGGVARGA 118


>TC17525 similar to UP|O82624 (O82624) T9A4.14 protein, partial (22%)
          Length = 586

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 553 THVYQLYLVIFMGFQSWVI*LCWI*LL 579
           THV+ +Y+ +   + SWV  +CW  LL
Sbjct: 575 THVFVIYIYVTTQY*SWVYIICWYNLL 495


>TC14639 weakly similar to GB|AAM91068.1|22136564|AY129482
           AT5g11740/T22P22_130 {Arabidopsis thaliana;}, partial
           (61%)
          Length = 507

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 17/52 (32%), Positives = 21/52 (39%)
 Frame = -1

Query: 430 TRAVVPASNDKNSRGHPRGW*GGNHRGCEGRENGNVGRGALQPRKKVVCQDG 481
           T  + PAS+D   R       GG   G EGR +    RG  + R      DG
Sbjct: 276 TEIIHPASSDPERRSKGESSDGGKETGGEGRRDSGRRRGGARSRSLSGSSDG 121


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.359    0.161    0.583 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,594,176
Number of Sequences: 28460
Number of extensions: 426347
Number of successful extensions: 3945
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2869
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 3081
length of query: 1546
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1444
effective length of database: 1,994,680
effective search space: 2880317920
effective search space used: 2880317920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 61 (28.1 bits)