BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137825.9 - phase: 0
(319 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10413 homologue to UP|IM30_PEA (Q03943) Membrane-associated 30... 311 1e-85
TC9893 homologue to UP|PP1_MEDVA (P48488) Serine/threonine prote... 31 0.32
BP054244 29 0.92
CN825170 27 3.5
TC9756 similar to GB|AAB58901.1|2160692|ATU73527 B'''' regulator... 27 4.6
TC18706 similar to UP|BAD11339 (BAD11339) BRI1-KD interacting pr... 27 6.0
TC11778 weakly similar to UP|O80836 (O80836) At2g45830 protein, ... 26 7.8
TC15115 similar to UP|PIN1_MALDO (Q94G00) Peptidyl-prolyl cis-tr... 26 7.8
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 26 7.8
TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, part... 26 7.8
>TC10413 homologue to UP|IM30_PEA (Q03943) Membrane-associated 30 kDa
protein, chloroplast precursor (M30), partial (48%)
Length = 735
Score = 311 bits (796), Expect = 1e-85
Identities = 166/206 (80%), Positives = 177/206 (85%), Gaps = 5/206 (2%)
Frame = +3
Query: 1 MATKLQIFTQLPSAPLQSSSSSSS-----LRKPLATSFFGTRPANTVKFRGMRIAKPVRG 55
M+TKLQIFT LPS P QSSS S S L+KPL TSF GT ++ GMR+ KPVR
Sbjct: 117 MSTKLQIFTGLPSTPFQSSSPSPSSTLCMLKKPLTTSFLGTGTVEVLRLSGMRVVKPVRA 296
Query: 56 GGAIGAGMNLFERFTRVVKSYANAIVSSFEDPEKILEQAVLEMNDDLTKMRQATAQVLAS 115
GA MNLF+RF RVVKSYANA++SSFEDPEKILEQAVLEMNDDLTKMRQATAQVLAS
Sbjct: 297 PRRGGARMNLFDRFARVVKSYANAVISSFEDPEKILEQAVLEMNDDLTKMRQATAQVLAS 476
Query: 116 QKRMENKYKAATQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASALKAQLDQQKG 175
QKRMENKYKAA QASEEWYRKAQLALQKGEEDLAREALKRRKSFADNAS+LKAQLDQQKG
Sbjct: 477 QKRMENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSLKAQLDQQKG 656
Query: 176 VVDSLVSNTRLLESKIQEARSKKDTL 201
VV++LVSNTRLLESKI EARSKKDTL
Sbjct: 657 VVENLVSNTRLLESKISEARSKKDTL 734
>TC9893 homologue to UP|PP1_MEDVA (P48488) Serine/threonine protein
phosphatase PP1 , partial (33%)
Length = 636
Score = 30.8 bits (68), Expect = 0.32
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 266 SVDDDLANLKKELSGSSKKGELPPGRSSTRTGTP 299
SVDD L + L S KKG++ G +S+R GTP
Sbjct: 199 SVDDTLTCSFQILKSSEKKGKMGFGNNSSRPGTP 300
>BP054244
Length = 465
Score = 29.3 bits (64), Expect = 0.92
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 53 VRGGGAIGAGMNLFERFTRVVKSYANAI 80
+ GGG G G N F+ F +++SY+++I
Sbjct: 137 MEGGGGCGCGFNNFK*FHHLIRSYSSSI 54
>CN825170
Length = 539
Score = 27.3 bits (59), Expect = 3.5
Identities = 32/127 (25%), Positives = 51/127 (39%), Gaps = 12/127 (9%)
Frame = +2
Query: 8 FTQLPSAPLQSSSSSSSLRKPLATSFFGTRPANTVKFRGMRIAKPVRGGGAIGAGMNLFE 67
FT L S QSSSS SLRKP + G K + K + + + L +
Sbjct: 35 FTNLLSLQ-QSSSSGHSLRKPTLRALLG-----ICKVETSLVKKAILAANGVSQILPLLD 196
Query: 68 RFTRVVKSYANAIVSSFED--PEKILEQ----------AVLEMNDDLTKMRQATAQVLAS 115
++ A ++ F PE ++E VL N+D ++ A A +LA+
Sbjct: 197 DSDSEIRETAINLLFLFSQHVPEGVVEYLFKPRRLEALIVLLDNEDNDNVQMAAAGLLAN 376
Query: 116 QKRMENK 122
+ E +
Sbjct: 377 LPKSERE 397
>TC9756 similar to GB|AAB58901.1|2160692|ATU73527 B'''' regulatory subunit
of PP2A {Arabidopsis thaliana;}, partial (18%)
Length = 606
Score = 26.9 bits (58), Expect = 4.6
Identities = 24/79 (30%), Positives = 39/79 (48%), Gaps = 7/79 (8%)
Frame = +3
Query: 80 IVSSFE-DPEKILEQAVLEMNDDLTKM-RQATAQVLAS-QKRMENKYKAATQASEE---- 132
I +FE D E QAV + ++ KM + A++ Q++ E K A + +E+
Sbjct: 60 IFEAFELDIESHWHQAVHGLTVNVRKMFMEMDAELFEECQRQHEEKQAKAKEMAEQRELN 239
Query: 133 WYRKAQLALQKGEEDLARE 151
W R A+ A Q G ED+ +
Sbjct: 240 WKRLAEAAAQNGVEDMVTD 296
>TC18706 similar to UP|BAD11339 (BAD11339) BRI1-KD interacting protein 111
(Fragment), partial (16%)
Length = 640
Score = 26.6 bits (57), Expect = 6.0
Identities = 15/59 (25%), Positives = 32/59 (53%)
Frame = +3
Query: 140 ALQKGEEDLAREALKRRKSFADNASALKAQLDQQKGVVDSLVSNTRLLESKIQEARSKK 198
A + EED + ++RKS +A++ A ++ + ++D++ N + K Q+ + KK
Sbjct: 96 ASDEEEEDQVSKRKRKRKSGGKSAASPFASYEEFEHLMDNVDQNEKAPTQKKQKQKHKK 272
>TC11778 weakly similar to UP|O80836 (O80836) At2g45830 protein, partial
(38%)
Length = 816
Score = 26.2 bits (56), Expect = 7.8
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = +3
Query: 17 QSSSSSSSLRKPLATSFFGTRPANTVKFRG 46
QS SSS ++KP ++F GT P N RG
Sbjct: 45 QSESSSREIQKPWKSTFHGT-PLNCSSSRG 131
>TC15115 similar to UP|PIN1_MALDO (Q94G00) Peptidyl-prolyl cis-trans
isomerase 1 (Rotamase Pin1) (PPIase Pin1) (MdPin1) ,
partial (98%)
Length = 737
Score = 26.2 bits (56), Expect = 7.8
Identities = 24/109 (22%), Positives = 47/109 (43%)
Frame = +3
Query: 108 ATAQVLASQKRMENKYKAATQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASALK 167
ATA++ + QKR + AA +A ++ RK + + + + E S K
Sbjct: 12 ATAKIDSDQKRKKASISAADRAEKDNNRKKKKS-KMSSSSSSGEVRASHILIKHQGSRRK 188
Query: 168 AQLDQQKGVVDSLVSNTRLLESKIQEARSKKDTLKARAQSAKTSTKVSE 216
A +G V + NT + Q + ++D L +A ++++S+
Sbjct: 189 ASWKDPEGRV---IKNTTRESAVAQLSTLREDILSGKANFEDVASRISD 326
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 26.2 bits (56), Expect = 7.8
Identities = 70/285 (24%), Positives = 113/285 (39%), Gaps = 29/285 (10%)
Frame = +3
Query: 63 MNLFERFTRVVKSYANAIVSSFEDPEKI-LEQAVLEMN---DDLTKMRQATAQVLASQKR 118
+ L E TR KS+ SSF D + + L QA + + D A +L
Sbjct: 282 LRLGELATRSNKSHR----SSFADEDLLDLSQAFSDFSACSSDPWTQEHAVTALLNLSLN 449
Query: 119 MENKYKAATQASEEWYRKAQLALQKGEEDLAREALKRRKSFA---DNASALKAQLDQQKG 175
ENK K T A + L+ G E + A S A +N S++ A G
Sbjct: 450 DENK-KLITNAGA--VKSLIYVLKTGTETSKQNAACALLSLALVEENRSSIGAS-----G 605
Query: 176 VVDSLVSNTRLLESKIQEARSKKDTL------------KARAQSAKTSTKVSEMLGNVNT 223
+ LVS LL + +R KKD L K RA +A + +++ T
Sbjct: 606 AIPPLVS---LLING--SSRGKKDALTTLYKLCSVKLNKERAVNAGVVKPLVDLVAEQGT 770
Query: 224 S---------GALSAFEKMEEKVMTMESQAEALGQLTSDDLEGK-FAMLESSSVDDDLAN 273
+L+A + ++ ++ A + + ++GK FA+L + D
Sbjct: 771 GLAEKAMVVLNSLAAVQDGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVR 950
Query: 274 LKKELSGSSKKGELPPGRSSTRTGTPFRDADIETELEQLRQRSKE 318
+ L ++G +PP S +++GTP ET L LR+ +E
Sbjct: 951 NRGLLV---REGGIPPLVSLSQSGTPRAKHKAETLLRYLRESRQE 1076
>TC18190 weakly similar to UP|O24569 (O24569) HOX1B protein, partial (10%)
Length = 981
Score = 26.2 bits (56), Expect = 7.8
Identities = 37/169 (21%), Positives = 64/169 (36%), Gaps = 1/169 (0%)
Frame = +3
Query: 81 VSSFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRMENKYKAATQASEEWYRKAQLA 140
VSS +PE LE + + L +K + YK+ T EEW A +
Sbjct: 99 VSSLREPE-------LEEEGFTPVSGKRNVERLDYKKLYDETYKSDTSEDEEWTASATPS 257
Query: 141 LQKGEEDLAREALKRRKSFADNASALKAQLDQQKGVVDSLVSNTRLLESKIQEARSKKDT 200
+K + K +D ++ ++ ++ V NT +K S +
Sbjct: 258 RKK------KLCGKMTPVSSDGKASNNSRHTPERNTQQDKVENTNNSPTK-----SLEGC 404
Query: 201 LKARAQSAKTSTKVSEMLGNVNTSGALSAF-EKMEEKVMTMESQAEALG 248
L++ ++ K + + LG+V +F + T ES AE LG
Sbjct: 405 LESGSRDKKPRSSTRQRLGDVVVQRLHKSFKDNQYPDRATKESLAEELG 551
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.309 0.123 0.316
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,102,661
Number of Sequences: 28460
Number of extensions: 32454
Number of successful extensions: 260
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of query: 319
length of database: 4,897,600
effective HSP length: 90
effective length of query: 229
effective length of database: 2,336,200
effective search space: 534989800
effective search space used: 534989800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC137825.9