BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137825.14 + phase: 0
(552 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV408968 78 4e-15
AV769410 58 3e-09
TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor,... 30 0.78
AI967683 29 1.7
TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear phospho... 28 3.9
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 28 3.9
TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (... 28 5.0
AV773558 28 5.0
AW164119 28 5.0
TC11600 similar to UP|Q9LSW2 (Q9LSW2) Actin-like protein (AT5g43... 28 5.0
TC11651 28 5.0
TC8198 similar to UP|P93273 (P93273) PAFD103 protein (Fragment),... 27 6.6
TC16548 homologue to UP|Q9M5A9 (Q9M5A9) Glucose 6 phosphate/phos... 27 6.6
TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger pro... 27 6.6
TC8975 27 6.6
TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%) 27 8.6
TC12048 weakly similar to UP|Q9LGA3 (Q9LGA3) ESTs D22655(C0749),... 27 8.6
BP080337 27 8.6
>AV408968
Length = 197
Score = 77.8 bits (190), Expect = 4e-15
Identities = 39/65 (60%), Positives = 49/65 (75%)
Frame = +3
Query: 134 QLQPFKNGWGRNHLIRQVNKISRKMLLELDGGNKLQEPLANAMSVADFSLKLIIGFGSTF 193
QLQP K+GW R+HL++ VN +SRKML + D GN+LQEPLA AM+VAD SL++ G S F
Sbjct: 3 QLQPCKHGWDRDHLMKLVNNMSRKMLSQHDRGNELQEPLAKAMAVADLSLQVTNGDRSIF 182
Query: 194 LEECY 198
EE Y
Sbjct: 183 SEEFY 197
>AV769410
Length = 405
Score = 58.2 bits (139), Expect = 3e-09
Identities = 31/64 (48%), Positives = 40/64 (62%)
Frame = -1
Query: 484 GRMLEEFAIAEDLNLDLSKRSYLNCDKQSEDIKETEEQSSSRKRKGGPPIVRVIEELIPS 543
G MLEEFAI E +L+ S YL+ D Q ED +E +E SS K + R+++EL PS
Sbjct: 402 GHMLEEFAITEGRDLNSSSTLYLSGDNQIEDREEIKEPSSFGKHTMYSTVARIVKELSPS 223
Query: 544 FPDR 547
FPDR
Sbjct: 222 FPDR 211
>TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
subunit, partial (81%)
Length = 1263
Score = 30.4 bits (67), Expect = 0.78
Identities = 19/60 (31%), Positives = 23/60 (37%), Gaps = 1/60 (1%)
Frame = +2
Query: 353 CSENSLHCSVTPSECLNSDSDKNCDTINLESKMRNTPY-NNQCQEEITEQFSTPMSRKNC 411
CS N HC TP L+SK +N P +N E + F T R NC
Sbjct: 2 CSRNPTHCKQTP----------------LKSKQQNKPIKSNSMAEHLASIFGTEKDRVNC 133
>AI967683
Length = 464
Score = 29.3 bits (64), Expect = 1.7
Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 3/53 (5%)
Frame = +3
Query: 328 FTDAYMEEQSEDSDNESDKDEDDSQCS---ENSLHCSVTPSECLNSDSDKNCD 377
+T +++SED DNE +D S S E L S + SDSD + D
Sbjct: 60 YTQDISDDESEDDDNEGSAHDDSSAYSSEPEELLGSSESSDSEETSDSDSDID 218
>TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear
phosphoprotein-like protein, partial (5%)
Length = 789
Score = 28.1 bits (61), Expect = 3.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 334 EEQSEDSDNESDKDEDDS 351
EE+ EDS+ SD DED+S
Sbjct: 53 EEEEEDSEESSDDDEDES 106
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 28.1 bits (61), Expect = 3.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 333 MEEQSEDSDNESDKDEDDSQCSEN 356
+EE ED D + D+D+DD + E+
Sbjct: 770 IEEDDEDGDEDEDEDDDDDEEEED 841
>TC13318 similar to UP|CAA20314 (CAA20314) SPBC30B4.01c protein (SPBC3D6.14C
protein) (Fragment), partial (15%)
Length = 543
Score = 27.7 bits (60), Expect = 5.0
Identities = 11/51 (21%), Positives = 25/51 (48%)
Frame = +3
Query: 334 EEQSEDSDNESDKDEDDSQCSENSLHCSVTPSECLNSDSDKNCDTINLESK 384
EE+ +D + E D+DEDD ++ + + + ++ + + +E K
Sbjct: 252 EEEEDDDEEEDDEDEDDDDDDDDDDDGEEEEDDDDDDEEEEGSEEVEVEGK 404
>AV773558
Length = 469
Score = 27.7 bits (60), Expect = 5.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 323 EFDQGFTDAYMEEQSEDSDNESDKDEDDSQCSEN 356
E D+ D ++ SED D++ D D+DD +++
Sbjct: 411 EGDEELDDDFVLVYSEDDDDDDDDDDDDDDYTDD 310
>AW164119
Length = 300
Score = 27.7 bits (60), Expect = 5.0
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = +1
Query: 482 LIGRMLEEFAIAEDLNLDLSKRSYLN 507
L+G +LE + +A +LNL+L Y+N
Sbjct: 103 LVGSLLEFYVMASELNLNLRSDGYVN 180
>TC11600 similar to UP|Q9LSW2 (Q9LSW2) Actin-like protein
(AT5g43500/MWF20_22), partial (20%)
Length = 706
Score = 27.7 bits (60), Expect = 5.0
Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = -3
Query: 266 NSTPKSLLQILDVINKCSN-KSTHDVTLQKEHIEEEVDSILSVSAQTNQIIQDLLPDY 322
N+ S L L +N S TH ++L+K I +LSV++ N I+ +LP Y
Sbjct: 431 NTQHSSFLLSLQCVNGLSRIHVTHSLSLKKIRI-----LVLSVTSNVNTILNPILPTY 273
>TC11651
Length = 480
Score = 27.7 bits (60), Expect = 5.0
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -3
Query: 373 DKNCDTINLESKMRNTPYNNQCQEEITEQFSTPMSRKNCDSSAVSLDK-EPDENIVKRHE 431
DK TIN + K+++ NNQ Q+ + F + K+ S ++S N+ RH+
Sbjct: 364 DKKKLTINFKFKLKHKILNNQLQQYSSPHFIHKQTSKDLASHSLSSSS*RAWRNLHHRHQ 185
Query: 432 FHESYTEAAPRDKSNFCEEKKPIPTKY 458
S +A + C KK ++
Sbjct: 184 --NS*NKAQKNTPAVICHPKKQCGARF 110
>TC8198 similar to UP|P93273 (P93273) PAFD103 protein (Fragment), partial
(65%)
Length = 850
Score = 27.3 bits (59), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = +3
Query: 509 DKQSEDIKETEEQSSSRKRKGGPPIVRVIEE 539
DK S+++KE+++Q +S GP + EE
Sbjct: 282 DKASKEVKESQDQPNSSDTNNGPDLAENPEE 374
>TC16548 homologue to UP|Q9M5A9 (Q9M5A9) Glucose 6 phosphate/phosphate
translocator (AT5g54800/MBG8_6), partial (20%)
Length = 487
Score = 27.3 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 21/46 (44%)
Frame = -1
Query: 315 IQDLLPDYEFDQGFTDAYMEEQSEDSDNESDKDEDDSQCSENSLHC 360
I LL D+G + Y +S D N KD D + +SLHC
Sbjct: 244 IPTLLFSL*IDEGAKNGYGGSESIDGLNWGVKDNDGRDNNRDSLHC 107
>TC13140 weakly similar to UP|RN12_HUMAN (Q9NVW2) RING finger protein 12
(LIM domain interacting RING finger protein) (RING
finger LIM domain-binding protein) (R-LIM) (NY-REN-43
antigen), partial (4%)
Length = 526
Score = 27.3 bits (59), Expect = 6.6
Identities = 18/74 (24%), Positives = 35/74 (46%), Gaps = 5/74 (6%)
Frame = -1
Query: 293 QKEHIEEEVDSILSVSAQTNQIIQDLLPDYEF---DQGFTDAYMEEQSEDSDNESDKDED 349
+K++++++ D + S I L+ + D+G D E S+D+D +D+D D
Sbjct: 349 EKKNVDDDDDDTTNNSQSMLVIFSRLIGESSTRGEDEGDDDGEEESNSDDADETADEDMD 170
Query: 350 --DSQCSENSLHCS 361
D + + CS
Sbjct: 169 GGDGDGDGSDVSCS 128
>TC8975
Length = 508
Score = 27.3 bits (59), Expect = 6.6
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +3
Query: 378 TINLESKMRNTPYNNQCQEEITEQFSTPMSRKNCD---SSAVSLDKEPDENIVKRHEFHE 434
++NL R P+N+ + S P R D SS +S + D ++ + E H+
Sbjct: 138 SVNLRFPHRRRPHNSSFSVSASVSVSNPAVRTGSDDLVSSLLSKVVQTDGGVLLKKEEHK 317
Query: 435 SYTEAAPRDKSNFC 448
+E A ++ +C
Sbjct: 318 EVSEVA-QELQKYC 356
>TC12959 similar to UP|AAS52042 (AAS52042) ADR122Cp, partial (6%)
Length = 517
Score = 26.9 bits (58), Expect = 8.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 320 PDYEFDQGFTDAYMEEQSEDSDNESDKDEDDSQ 352
P F +D + +D D+ D+D+DD++
Sbjct: 85 PSSRFWDSLSDGSSSDDDDDDDDSEDEDDDDNE 183
>TC12048 weakly similar to UP|Q9LGA3 (Q9LGA3) ESTs D22655(C0749), partial
(20%)
Length = 697
Score = 26.9 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +2
Query: 323 EFDQGFTDAYMEEQSEDSDNESDKDED 349
EFD GF + + + E D + D DED
Sbjct: 296 EFDDGFVRSKLRARDEYDDGDYDDDED 376
>BP080337
Length = 469
Score = 26.9 bits (58), Expect = 8.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 131 PMPQLQPFKNGWGRNHLIRQVNKISRKMLLELDGGNKLQEP 171
PM QLQPF G+GR + ++ K K + G KL P
Sbjct: 353 PMKQLQPFLKGFGR--IPKKQGKSCEKA*RK*SSGRKLDGP 469
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,567,427
Number of Sequences: 28460
Number of extensions: 108566
Number of successful extensions: 511
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of query: 552
length of database: 4,897,600
effective HSP length: 95
effective length of query: 457
effective length of database: 2,193,900
effective search space: 1002612300
effective search space used: 1002612300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC137825.14