TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137823.6 + phase: 0 
         (217 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17011 weakly similar to UP|Q9FMB1 (Q9FMB1) FrnE protein-like, ...   374  e-105
AW720091                                                               28  1.6
TC15092 similar to UP|Q8QRX5 (Q8QRX5) UL145, partial (8%)              27  2.1
TC14742 similar to UP|Q9XFC0 (Q9XFC0) Cytosolic ascorbate peroxi...    27  2.7
TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory pro...    26  6.0
TC16748 similar to GB|AAO64917.1|29029076|BT005982 At4g28770 {Ar...    26  6.0
AV408296                                                               26  6.0

>TC17011 weakly similar to UP|Q9FMB1 (Q9FMB1) FrnE protein-like, partial
           (91%)
          Length = 1033

 Score =  374 bits (959), Expect = e-105
 Identities = 182/209 (87%), Positives = 195/209 (93%)
 Frame = +1

Query: 9   SEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKR 68
           +EKKLVRIDISSDTVCPWCFVGKKNLDKAIA+SKDKYNFEI WHP+QL PDAPKEG++KR
Sbjct: 67  AEKKLVRIDISSDTVCPWCFVGKKNLDKAIAASKDKYNFEIKWHPFQLQPDAPKEGVDKR 246

Query: 69  EFYRSKFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQGLDKQHDLV 128
           E+YR KFG +S++MEARM EVFRT+GL YSLSGLTGNTMDSHRLIYFS QQGLDKQHDLV
Sbjct: 247 EYYRKKFGPQSERMEARMLEVFRTIGLEYSLSGLTGNTMDSHRLIYFSQQQGLDKQHDLV 426

Query: 129 EELGLGYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKTYSRNITGV 188
           EEL LGYFTQ KYIGD +FLLE+AAKVGIEGAEEFL NPNNGLKEVEEELKTYS NITGV
Sbjct: 427 EELCLGYFTQGKYIGDHKFLLESAAKVGIEGAEEFLTNPNNGLKEVEEELKTYSGNITGV 606

Query: 189 PYYVINGSQKLSGGQPPEVFLRAFQAATS 217
           PYYVING+ KLSGGQP EVFLRAFQAATS
Sbjct: 607 PYYVINGNHKLSGGQPLEVFLRAFQAATS 693


>AW720091 
          Length = 492

 Score = 27.7 bits (60), Expect = 1.6
 Identities = 14/44 (31%), Positives = 24/44 (53%), Gaps = 5/44 (11%)
 Frame = +3

Query: 8   HSEKK----LVRIDISSDTVCPWCFV-GKKNLDKAIASSKDKYN 46
           H++K+    ++ + + S   CPW FV  +K +D A  +S D  N
Sbjct: 114 HTQKRDL*IVMGVRVDSQNSCPWSFVTRRKKVDSAGTTSNDSEN 245


>TC15092 similar to UP|Q8QRX5 (Q8QRX5) UL145, partial (8%)
          Length = 672

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 19  SSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDAPKE 63
           +S    PW  + +K LDK+  S    Y+F     P  LS  +P E
Sbjct: 282 TSQKSSPWIALARKGLDKSCYSESLPYSFSF---PSSLSASSPLE 157


>TC14742 similar to UP|Q9XFC0 (Q9XFC0) Cytosolic ascorbate peroxidase,
           complete
          Length = 1256

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 157 IEGAEEFLKNPNNGLKEVE---EELKTYSRNITGVPYYVING--SQKLSGG 202
           I   EEF    NNGLK+     EE+KT    IT    Y + G  + +++GG
Sbjct: 252 IRNEEEFSHGANNGLKKALDFCEEVKTKVPKITYADLYQLAGVVAVEITGG 404


>TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory protein tup1
           homolog - Arabidopsis                thaliana
           {Arabidopsis thaliana;}, partial (51%)
          Length = 770

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 141 YIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEEL 178
           +   +EF++  A  V I+ +     +P+NGL ++ +E+
Sbjct: 584 HFASEEFVIHVATAVEIKLSTSSSLHPSNGLNKISKEI 697


>TC16748 similar to GB|AAO64917.1|29029076|BT005982 At4g28770 {Arabidopsis
           thaliana;}, partial (36%)
          Length = 442

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 15/41 (36%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
 Frame = -2

Query: 166 NPNNGLKEVEEELKTYSRNITGVPYYV----INGSQKLSGG 202
           NPN GLKE++E       N+  +  +V     N S +L GG
Sbjct: 144 NPNKGLKEIQELKNESKGNVATIRAHVRVPNSNPSGELFGG 22


>AV408296 
          Length = 428

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 11/38 (28%), Positives = 21/38 (54%)
 Frame = -1

Query: 50  LWHPYQLSPDAPKEGIEKREFYRSKFGSRSDQMEARMS 87
           LWHP  +S      G++++EF    +   S  ++AR++
Sbjct: 197 LWHPISISNYFHLAGLQRKEFKIKMWTRNSRNIKARIN 84


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,251,166
Number of Sequences: 28460
Number of extensions: 36312
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of query: 217
length of database: 4,897,600
effective HSP length: 87
effective length of query: 130
effective length of database: 2,421,580
effective search space: 314805400
effective search space used: 314805400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)