BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137823.5 - phase: 0
(121 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB828383 102 2e-23
BP042612 33 0.013
BP053036 32 0.030
BI418290 30 0.086
BP079746 27 0.95
TC17417 homologue to GB|CAB10392.1|2244971|ATFCA5 galactokinase ... 25 2.8
TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine liga... 25 2.8
TC17821 similar to UP|O49656 (O49656) PREDICTED protein, partial... 25 3.6
TC12666 homologue to UP|Q9LF33 (Q9LF33) UDP-glucose dehydrogenas... 25 3.6
TC9215 25 4.7
AW719467 25 4.7
TC17147 similar to UP|Q8LP14 (Q8LP14) Nine-cis-epoxycarotenoid d... 24 6.2
TC14383 homologue to UP|Q8W3Y3 (Q8W3Y3) 1-aminocyclopropane-1-ca... 24 6.2
CN824958 24 6.2
AV765037 24 6.2
TC10005 weakly similar to UP|O49409 (O49409) Protein kinase - li... 24 6.2
TC7965 homologue to UP|O81926 (O81926) Thaumatin-like protein PR... 24 8.1
BP042568 24 8.1
BP036640 24 8.1
AV769820 24 8.1
>CB828383
Length = 372
Score = 102 bits (254), Expect = 2e-23
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = +1
Query: 39 KDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGLLFTWG 87
+DDQLRIPKQLPPQLFGCPAG N RWLD+ACGREHTAAIASDGLL+TWG
Sbjct: 1 EDDQLRIPKQLPPQLFGCPAGTNVRWLDVACGREHTAAIASDGLLYTWG 147
>BP042612
Length = 351
Score = 33.1 bits (74), Expect = 0.013
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 51 PQLFGCPAGLNTRWLDIACGREHTAAIASDGLLFTWGLD 89
P++ +G++ + DI CG HT A+ G ++TWG D
Sbjct: 300 PKIVDSLSGIHVK--DIVCGEYHTCALTDFGEVYTWGND 190
>BP053036
Length = 471
Score = 32.0 bits (71), Expect = 0.030
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 67 IACGREHTAAIASDGLLFTWG 87
+ACG HT A+ G LFTWG
Sbjct: 38 VACGEFHTCAVTMAGELFTWG 100
>BI418290
Length = 435
Score = 30.4 bits (67), Expect = 0.086
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +1
Query: 20 KSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIAS 79
+S + +G +GQ G L LP + P ++ +D CG HT+ ++S
Sbjct: 55 ESICWTFGRGDNGQLGHGTTQSTL-----LPTPVIELPENVHLVCVD--CGLFHTSGVSS 213
Query: 80 DGLLFTWGL 88
G +++WG+
Sbjct: 214 AGDVWSWGM 240
>BP079746
Length = 261
Score = 26.9 bits (58), Expect = 0.95
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +2
Query: 93 SLLVLLIVHDFIYSFKNCFIVLELFFYDT 121
SLL+ L++ DFIY CF F +DT
Sbjct: 50 SLLIFLVIDDFIYLI-ICFFPNGFFLFDT 133
>TC17417 homologue to GB|CAB10392.1|2244971|ATFCA5 galactokinase like
protein {Arabidopsis thaliana;}, partial (13%)
Length = 559
Score = 25.4 bits (54), Expect = 2.8
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 6/29 (20%)
Frame = +2
Query: 95 LVLLIVHD------FIYSFKNCFIVLELF 117
LVLLI++ YSF+ CF ++ELF
Sbjct: 275 LVLLILYSPLKYSLLAYSFERCFWIVELF 361
>TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine ligase {Lotus
corniculatus var. japonicus;} , complete
Length = 1310
Score = 25.4 bits (54), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +1
Query: 77 IASDGLLFTWGLDFSYSLLVLLIVHDFIYSFK 108
I+S G+ +WG+DF ++ L+V F Y K
Sbjct: 1000 ISSSGI--SWGIDFILQAMI*LLVDVFYYLMK 1089
>TC17821 similar to UP|O49656 (O49656) PREDICTED protein, partial (16%)
Length = 535
Score = 25.0 bits (53), Expect = 3.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 83 LFTWGLDFSYSLLVLLIVH 101
L+ GLDF S+LVL++ H
Sbjct: 187 LYAGGLDFLISMLVLILFH 243
>TC12666 homologue to UP|Q9LF33 (Q9LF33) UDP-glucose dehydrogenase-like
protein, partial (38%)
Length = 675
Score = 25.0 bits (53), Expect = 3.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 17 IPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGC 56
I + + +W + QS K DQL Q P L GC
Sbjct: 511 ISQPQSCQIWRHQQSS*QHSPSKSDQLLCQLQDPEFLLGC 392
>TC9215
Length = 539
Score = 24.6 bits (52), Expect = 4.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 80 DGLLFTWGLDFSYSLLVLLIVHDFIYSFKNCFIVLELFFY 119
+G WGL + + ++DF+ S VLE FY
Sbjct: 398 EGFYILWGLINLAYPSIFMCIYDFLVSHSIAKNVLEFIFY 517
>AW719467
Length = 139
Score = 24.6 bits (52), Expect = 4.7
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +3
Query: 88 LDFSYSLLVLLIVHDFI 104
LDF +SL +VHDF+
Sbjct: 48 LDFPFSLYFFFLVHDFL 98
>TC17147 similar to UP|Q8LP14 (Q8LP14) Nine-cis-epoxycarotenoid
dioxygenase4, partial (22%)
Length = 663
Score = 24.3 bits (51), Expect = 6.2
Identities = 8/30 (26%), Positives = 19/30 (62%)
Frame = +1
Query: 87 GLDFSYSLLVLLIVHDFIYSFKNCFIVLEL 116
G+DF Y ++ ++ ++ +NC+ +L+L
Sbjct: 460 GIDFHYIVMNFPLISISVFYKRNCYCLLDL 549
>TC14383 homologue to UP|Q8W3Y3 (Q8W3Y3) 1-aminocyclopropane-1-carboxylic acid
oxidase, complete
Length = 1249
Score = 24.3 bits (51), Expect = 6.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 90 FSYSLLVLLIVHDFIYSFKNCFIVLELFFYD 120
FSY + +L+I+ D ++ FIVL + F++
Sbjct: 1072 FSYHMDILIIIFDVMFLK*FYFIVLYIIFHN 1164
>CN824958
Length = 593
Score = 24.3 bits (51), Expect = 6.2
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = +3
Query: 77 IASDGLLFTWGLDFSYSLLVLLIVHDFIYSFKNCFIVLE 115
++ + + W +D L L+++ DF+ + +CF++L+
Sbjct: 330 LSKEARVVNWKID----LFCLILLLDFLLPYYHCFLMLK 434
>AV765037
Length = 584
Score = 24.3 bits (51), Expect = 6.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +3
Query: 8 GTTKPVAASIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLN 61
G T P + PR + G + TGR+E D P LPP P+ L+
Sbjct: 102 GPTSPTSPLHPR-----LQGLSLGSPTGRQEDDRSQCHPLPLPPGSPTSPSSLS 248
>TC10005 weakly similar to UP|O49409 (O49409) Protein kinase - like protein
(Protein kinase-like protein), partial (17%)
Length = 657
Score = 24.3 bits (51), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +2
Query: 95 LVLLIVHDFIYSFKNCFIVLELFF 118
LV VHD +YSF+ FI++ F
Sbjct: 395 LVYSQVHDCVYSFQRFFILVNDLF 466
>TC7965 homologue to UP|O81926 (O81926) Thaumatin-like protein PR-5b
precursor (Fragment), partial (37%)
Length = 633
Score = 23.9 bits (50), Expect = 8.1
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 41 DQLRIPKQLPPQLFGCPAGLNTRWLDIACGREH 73
D P+ P F CPAG N + + G H
Sbjct: 170 DSYSYPQDDPTSTFTCPAGSNYKVVFCPLGSPH 268
>BP042568
Length = 575
Score = 23.9 bits (50), Expect = 8.1
Identities = 12/28 (42%), Positives = 14/28 (49%)
Frame = -1
Query: 37 KEKDDQLRIPKQLPPQLFGCPAGLNTRW 64
KEK + + KQ LFGC N RW
Sbjct: 254 KEKQEVIETEKQKDLSLFGC----NLRW 183
>BP036640
Length = 468
Score = 23.9 bits (50), Expect = 8.1
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -2
Query: 41 DQLRIPKQLPPQLFGCPAGLNTRWLDIACGREH 73
D P+ P F CPAG N + + G H
Sbjct: 368 DSYSYPQDDPTSTFTCPAGSNYKVVFCPLGSPH 270
>AV769820
Length = 316
Score = 23.9 bits (50), Expect = 8.1
Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 3/40 (7%)
Frame = -2
Query: 10 TKPVAASIPRKS---AIYVWGYNQSGQTGRKEKDDQLRIP 46
TK +A ++ K +IY W + RK +D +RIP
Sbjct: 276 TKGIACNVCGKKGHLSIYCWRRCEKQANERKAVEDDMRIP 157
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.143 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,482,511
Number of Sequences: 28460
Number of extensions: 35319
Number of successful extensions: 269
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of query: 121
length of database: 4,897,600
effective HSP length: 79
effective length of query: 42
effective length of database: 2,649,260
effective search space: 111268920
effective search space used: 111268920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)
Medicago: description of AC137823.5