TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137823.16 + phase: 0 
         (621 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14831 homologue to UP|P93499 (P93499) DnaJ-like protein (Fragm...    31  0.67
BP038348                                                               31  0.67
BP042349                                                               30  1.5
TC18669 similar to UP|Q93Y39 (Q93Y39) ATP-dependent RNA helicase...    29  2.6
AV409038                                                               28  3.3
BP077029                                                               28  3.3
BP036080                                                               28  4.4
AV408114                                                               28  4.4
BP058189                                                               27  7.5
AV765267                                                               27  7.5
TC15629 similar to UP|Q40540 (Q40540) Pit2 protein, partial (21%)      27  9.7
BP042583                                                               27  9.7
NP508285 myc-like regulatory protein [Lotus japonicus]                 27  9.7
TC17055 similar to UP|Q9FG04 (Q9FG04) Dbj|BAA86974.1 (AT5g06660/...    27  9.7
TC7819 similar to UP|Q43817 (Q43817) Lipoxygenase  , partial (97%)     27  9.7

>TC14831 homologue to UP|P93499 (P93499) DnaJ-like protein (Fragment),
           partial (63%)
          Length = 851

 Score = 30.8 bits (68), Expect = 0.67
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 345 TALLKANTDAASFWSQQPSTAREYALSTIIPACSAVVETSNSAKDLIEKEVSAFYR 400
           TA   +  DA S W++QP  +  Y    +I  CS++ E          +E+ A YR
Sbjct: 153 TATATSTADARSTWTEQPRPSSTY----LISPCSSLYEILGIPAGASSQEIKAAYR 308


>BP038348 
          Length = 526

 Score = 30.8 bits (68), Expect = 0.67
 Identities = 24/90 (26%), Positives = 36/90 (39%), Gaps = 6/90 (6%)
 Frame = -3

Query: 289 EREVSGLKASLNTLMSEIQRLNKLC-AERKEAEDSLKK-----KWKKIEEFDGRRSELES 342
           +RE++     +  L  ++QRL   C A + + E  ++K     KWKK     G  + LE 
Sbjct: 422 KREINAKHVEIRKLKEDVQRLQGQCSAMQVQMEKMVEKKKGFFKWKKFPFSXGESAVLE- 246

Query: 343 IYTALLKANTDAASFWSQQPSTAREYALST 372
                 K   D   F  Q P  A    + T
Sbjct: 245 ------KTEQDGVEFERQTPGAATNVDMKT 174


>BP042349 
          Length = 402

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 17/43 (39%), Positives = 23/43 (52%)
 Frame = -2

Query: 384 SNSAKDLIEKEVSAFYRSPDNSLYMLPSSPQALLEAIGSSGSS 426
           +N  KDL+   +    +SPD  LY  PS  QA+   +GS  SS
Sbjct: 392 TNQKKDLVHCHIVLVQKSPDRRLY-FPSLQQAIPFIMGSETSS 267


>TC18669 similar to UP|Q93Y39 (Q93Y39) ATP-dependent RNA helicase
           (Fragment), partial (3%)
          Length = 461

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 32  DAQRSGVDSSVEMVNSFSAKNEKEAVYSTVKGSKSSDDVIVIETTRE 78
           D  + G D + + V     K  K+  +  V G++SSDDV  +ET  E
Sbjct: 202 DIHKPGGDDNKKQVVPKQGKKLKKQKHDGVDGARSSDDVPEVETDGE 62


>AV409038 
          Length = 349

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 15/37 (40%), Positives = 23/37 (61%)
 Frame = +2

Query: 38  VDSSVEMVNSFSAKNEKEAVYSTVKGSKSSDDVIVIE 74
           + +SVE V   SA +EK+ V +    S +S+D+I IE
Sbjct: 65  ISNSVEPVGQNSADSEKQVVANGKDSSLASNDIIEIE 175


>BP077029 
          Length = 486

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = -3

Query: 268 IGATSQNVGSLRQLQLDVWAKEREV----SGLKASLNTLMSEIQRLNKLCAERKEAEDSL 323
           I A   N+   +  ++    ++REV      LKA  + L  ++  L       K+ +D++
Sbjct: 457 INAIKANLSVFQTAKVTAIKRKREVFEEGKALKAQRDELREQVPHLRDEREVAKKIQDNI 278

Query: 324 KKKWKKI-EEFD 334
           + +W K+ E+FD
Sbjct: 277 RAEWSKLGEKFD 242


>BP036080 
          Length = 409

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 15/41 (36%), Positives = 23/41 (55%)
 Frame = -1

Query: 255 LHGGTDVTSRSIGIGATSQNVGSLRQLQLDVWAKEREVSGL 295
           L+GG D+T+     G T +N  SLR  +  VW + +  +GL
Sbjct: 409 LNGGADITN-----GLTHRNHRSLRLQRQQVWIRSKLTTGL 302


>AV408114 
          Length = 424

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -3

Query: 323 LKKKWKKIEEFDGRRSELESIYTALLKANTDAASFWSQQPST 364
           L KK K IEE    RS+L       LK+ TD ASF +  P+T
Sbjct: 284 LPKKCKAIEELI*LRSKL----WIALKSTTDVASFTTPSPNT 171


>BP058189 
          Length = 537

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 180 YENNIVMDVSSSDGSSPLQYP-LYGNGKLGADVPP 213
           ++  + MDVS+ +GSSP  +P ++ N +L + V P
Sbjct: 159 FKRKLPMDVSTMNGSSPAPFPIMHPNLRLKSHVEP 263


>AV765267 
          Length = 493

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 23/91 (25%), Positives = 40/91 (43%)
 Frame = +1

Query: 49  SAKNEKEAVYSTVKGSKSSDDVIVIETTREKNIRKACESLVAYMVDKIQSSFPAYEGSGV 108
           S + E E +Y+T +  + +++   +E   E  +RK+C+   A    + + +F     S  
Sbjct: 160 SCEQETEWIYNTCRVMELTNNKRRLELEEEAVLRKSCKLSDAAEEQETRKNFLELSLSLN 339

Query: 109 LSNPQAEAAKLGFDFDGQIPDEVRTVIVNCL 139
            SN Q  A     D    I    R + +NCL
Sbjct: 340 QSNDQNRAGDQS-DSSSLIHQLGRDITINCL 429


>TC15629 similar to UP|Q40540 (Q40540) Pit2 protein, partial (21%)
          Length = 616

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +3

Query: 87  SLVAYMVDKIQSSFPAYEGSGVLSNPQAEAAKLGFDFDGQIPDEVRTVI-----VNCLKS 141
           S + +      +S+P    S VL + +A    + +DF+ +I D    VI     V  LK 
Sbjct: 210 SHIVFTKASADNSYPIRTLSAVLGSEEAAKEAVVYDFEDEINDNFSAVITPENAVQLLKQ 389

Query: 142 PPLL 145
           P +L
Sbjct: 390 PGVL 401


>BP042583 
          Length = 459

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 12/32 (37%), Positives = 16/32 (49%)
 Frame = -1

Query: 551 MEKWLPELKTGVLNAQQSLEACKYVWGLLDEW 582
           +E+WL  L + +L      E C Y W LL  W
Sbjct: 393 LEQWLVLLGSCMLKMPLD*EMCLYFWVLLTSW 298


>NP508285 myc-like regulatory protein [Lotus japonicus]
          Length = 1529

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 77  REKNIRKACESLVAYMVDKIQSSFP 101
           REKN+  AC +L ++ V  + S+FP
Sbjct: 310 REKNLLSAC*ALHSHTVSPVSSAFP 236


>TC17055 similar to UP|Q9FG04 (Q9FG04) Dbj|BAA86974.1 (AT5g06660/F15M7_19),
           partial (26%)
          Length = 458

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = -3

Query: 453 IPSICRVSAALQ----YAAGGLEGSDAGLASILESLEFCLK---RRGSEASVLEDLLKAI 505
           IP+  R S  L+    YA G +E S     S LES   CL    + GS  S L     A+
Sbjct: 339 IPTTVRPSEYLKSEKGYAMGSIEKSTRKRVSKLESGSNCLNCRAKNGSFPSSLRFKYNAL 160

Query: 506 NLVHIRRD 513
           N+  I R+
Sbjct: 159 NINQINRN 136


>TC7819 similar to UP|Q43817 (Q43817) Lipoxygenase  , partial (97%)
          Length = 2842

 Score = 26.9 bits (58), Expect = 9.7
 Identities = 26/84 (30%), Positives = 37/84 (43%)
 Frame = +2

Query: 436  ISAAILTARAGARDPSAIPSICRVSAALQYAAGGLEGSDAGLASILESLEFCLKRRGSEA 495
            + A +L       DPSA   I  +     YAA GLE  DA  + + E +    K   S+A
Sbjct: 1895 LPADLLKRGVAVEDPSAPHGIRLLIEDYPYAADGLEIWDAIKSWVGEYVNLYYK---SDA 2065

Query: 496  SVLEDLLKAINLVHIRRDLVQSGH 519
             +++D      L     +LVQ GH
Sbjct: 2066 EIVQD----AELQAFWTELVQVGH 2125


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,085,722
Number of Sequences: 28460
Number of extensions: 106565
Number of successful extensions: 416
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of query: 621
length of database: 4,897,600
effective HSP length: 96
effective length of query: 525
effective length of database: 2,165,440
effective search space: 1136856000
effective search space used: 1136856000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)