BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137822.5 - phase: 0
(203 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10483 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (... 98 9e-22
TC17588 similar to UP|BCP_PEA (Q41001) Blue copper protein precu... 90 2e-19
AU089318 89 5e-19
TC12474 weakly similar to UP|O82576 (O82576) Blue copper protein... 80 3e-16
TC16136 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein,... 79 4e-16
TC12447 weakly similar to GB|AAM63773.1|21555085|AY086719 phytoc... 79 5e-16
TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-li... 77 3e-15
TC12369 weakly similar to UP|ENL1_ARATH (Q9SK27) Early nodulin-l... 71 1e-13
TC14275 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (... 70 2e-13
TC13215 similar to UP|Q39040 (Q39040) Lamin, partial (15%) 70 3e-13
TC19996 weakly similar to UP|ENL1_ARATH (Q9SK27) Early nodulin-l... 67 2e-12
AV407087 60 3e-10
TC17556 similar to UP|Q39131 (Q39131) Lamin (AT5G15350/F8M21_240... 58 1e-09
TC14908 weakly similar to PIR|A86218|A86218 protein T27G7.18 [im... 55 6e-09
TC9870 weakly similar to UP|NO16_MEDTR (P93328) Early nodulin 16... 49 6e-07
TC14276 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (... 46 4e-06
AV764731 40 2e-04
AV413520 40 4e-04
BP046587 38 0.001
TC17387 35 0.007
>TC10483 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (24%)
Length = 552
Score = 98.2 bits (243), Expect = 9e-22
Identities = 60/171 (35%), Positives = 85/171 (49%), Gaps = 7/171 (4%)
Frame = +3
Query: 17 KQRKSNTSTSTMALSRALFLFAFIA--TIFSTMAVAKDFVVGDEKGWTTLFD----YQTW 70
KQ + +TMA + + L A +A T+F T + VVGD GWT Y W
Sbjct: 54 KQGQPELKNTTMARNMNVLLLALLAATTLFHTSSAQTRHVVGDSTGWTIPTGGASFYTNW 233
Query: 71 TANKVFRLGDTLTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWY 130
ANK F +GDTL FN+ G+ NV +V S F SCS ++++G + +T G + +
Sbjct: 234 AANKTFSVGDTLVFNFANGQHNVAKVTKSAFDSCSGSSPVTLISTGPATVTLTETGVQHF 413
Query: 131 ISSVTDHCENGQKLFIT-VQPKQDGWSPVPSPSPSPSLDLVTPEAPPSNAP 180
I + HC GQKL +T V K +P P P+P S P P ++P
Sbjct: 414 ICAFGGHCSAGQKLAVTXVAGKASNNAPAPVPAPKSS-----PVPAPKSSP 551
>TC17588 similar to UP|BCP_PEA (Q41001) Blue copper protein precursor,
partial (61%)
Length = 747
Score = 90.1 bits (222), Expect = 2e-19
Identities = 54/145 (37%), Positives = 73/145 (50%)
Frame = +1
Query: 49 VAKDFVVGDEKGWTTLFDYQTWTANKVFRLGDTLTFNYVGGKDNVVRVNGSDFKSCSVPL 108
+A + VGD GW DY TWT++K F +GD+L FNY G V V SD+KSC+
Sbjct: 1 LATVYSVGDTSGWAAGADYSTWTSDKTFAVGDSLVFNY-GAGHTVDEVKESDYKSCTTGN 177
Query: 109 TAPVLTSGQDKIIITTYGRRWYISSVTDHCENGQKLFITVQPKQDGWSPVPSPSPSPSLD 168
+ +SG+ I + T G ++I SV HC G KL +TV+ +P S SPS
Sbjct: 178 SLSTDSSGKTTIALKTAGTHYFICSVPGHCSGGMKLAVTVKGAASFTTP-SSGKGSPSTT 354
Query: 169 LVTPEAPPSNAPWPASSVPRRSLLP 193
TP + + P S SL P
Sbjct: 355 TGTPTSTTTTPPALTDSSSGDSLSP 429
>AU089318
Length = 641
Score = 89.0 bits (219), Expect = 5e-19
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Frame = +3
Query: 25 TSTMALSRALFLFAFI--ATIFSTMAVAKDFVVGDEKGWTTL--FDYQTWTANKVFRLGD 80
T+ + RA+ L + A S AV K VGD GWT L DY+ W A F++GD
Sbjct: 27 TAMTLVQRAVVLVMVVMAAVQVSYAAVHK---VGDSAGWTILGNVDYKKWAAPXNFQVGD 197
Query: 81 TLTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWYISSVTDHCEN 140
T+ F Y NV+RV + + +C+ ++G D I IT +G ++ V HC+
Sbjct: 198 TIIFEYNAQFHNVMRVTHAMYXTCNASSPIATFSTGNDSIKITNHGHHFFFCGVPGHCQA 377
Query: 141 GQKLFITVQPKQDGWSPVPSPSPSPSLDLVTPEAPPSNAPWPA 183
GQK+ I V + P+P+P+PS + P +N P P+
Sbjct: 378 GQKVDINVISVSAATAAAPTPTPAPSSPSSSLATPSANVPAPS 506
>TC12474 weakly similar to UP|O82576 (O82576) Blue copper protein
(Fragment), partial (44%)
Length = 818
Score = 79.7 bits (195), Expect = 3e-16
Identities = 54/166 (32%), Positives = 74/166 (44%), Gaps = 6/166 (3%)
Frame = +1
Query: 28 MALSRALFLFAFIAT--IFSTMAVAKDFVVGDEKGW----TTLFDYQTWTANKVFRLGDT 81
MA++ L A +A +F + VVGD GW T F Y +W A F +GDT
Sbjct: 76 MAMNMNALLLALLAATALFHCSSAQTRHVVGDSAGWFVPGNTSF-YTSWAAKNTFAVGDT 252
Query: 82 LTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWYISSVTDHCENG 141
L FNY NV V +++ SC+ T+ + I G ++I V HC
Sbjct: 253 LVFNYAASAHNVEEVTKTNYDSCNSTSPIATYTTPPVTVTIKKTGAHYFICGVPGHCLGD 432
Query: 142 QKLFITVQPKQDGWSPVPSPSPSPSLDLVTPEAPPSNAPWPASSVP 187
QKL I V +P PS + +P TP PPS+ P+ S P
Sbjct: 433 QKLSINVASGSSAATP-PSSTATPPSSSTTP-PPPSSTTTPSPSSP 564
>TC16136 similar to UP|Q9ZRV5 (Q9ZRV5) Basic blue copper protein, partial
(82%)
Length = 872
Score = 79.3 bits (194), Expect = 4e-16
Identities = 46/134 (34%), Positives = 74/134 (54%)
Frame = +1
Query: 13 SNKIKQRKSNTSTSTMALSRALFLFAFIATIFSTMAVAKDFVVGDEKGWTTLFDYQTWTA 72
S ++ + + + S T+ ++ + L +A + A A + VG GW+ F+ TW
Sbjct: 61 SERMTEGRGSASLPTVVVTVGISLLCLLA-LQVEHANAATYTVGGPAGWS--FNTDTWPN 231
Query: 73 NKVFRLGDTLTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWYIS 132
K FR GD L FNY NVV V+ S +KSC+ P A VL+SG+D+I + G+ ++I
Sbjct: 232 GKKFRAGDVLIFNYDSTTHNVVAVDQSGYKSCTTPAGAKVLSSGKDQIRLGR-GQNYFIC 408
Query: 133 SVTDHCENGQKLFI 146
+ HC++G K+ I
Sbjct: 409 NCPGHCQSGMKVAI 450
>TC12447 weakly similar to GB|AAM63773.1|21555085|AY086719
phytocyanin-related protein-like {Arabidopsis thaliana;}
, partial (56%)
Length = 735
Score = 79.0 bits (193), Expect = 5e-16
Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Frame = +3
Query: 24 STSTMALSRALFLFAFIATIFSTMAVAKDFVVGDEK-GW----TTLFDYQTWTANKVFRL 78
S TMA S A L F+ FS AK+ +VG + W + W F++
Sbjct: 39 SEKTMAGSSASLLLLFLLFGFSA---AKELLVGGKTDAWKVPSSEADSLNQWAEKSRFKV 209
Query: 79 GDTLTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWYISSVTDHC 138
GD L + Y GGKD+V++VN D+ SC+ G K+ + G ++IS HC
Sbjct: 210 GDYLVWKYDGGKDSVLQVNKEDYGSCNTSNPIEEYKDGNTKVKLDRPGPHYFISGAKGHC 389
Query: 139 ENGQKLFITVQPKQDGWSPVPSPSPSPS-LDLVTPEAPPSNA 179
E GQKLF+ V + SP+ SP+ L+ AP S+A
Sbjct: 390 EKGQKLFVVVMTPKHSRDRAISPASSPAELEEGPAVAPTSSA 515
>TC7897 weakly similar to UP|ENL2_ARATH (Q9T076) Early nodulin-like protein
2 precursor (Phytocyanin-like protein), partial (31%)
Length = 1482
Score = 76.6 bits (187), Expect = 3e-15
Identities = 51/171 (29%), Positives = 72/171 (41%), Gaps = 5/171 (2%)
Frame = +3
Query: 28 MALSRALFLFAFIATIFSTMAVAKDFVVGDEKGW--TTLFDYQTWTANKVFRLGDTLTFN 85
M R L L + ++ + K F VG KGW Y W F++ DT+ F
Sbjct: 141 MEFQRPLCLLFLLFSLLPSSQAHK-FYVGGSKGWIPNPSESYTLWAGRNRFQIKDTIVFK 317
Query: 86 YVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWYISSVTDHCENGQKLF 145
Y G D+V+ V DF +C+ G + G ++IS +CE GQK+
Sbjct: 318 YTKGSDSVLEVKKEDFDNCNKANPIKKFEDGDTEFTFDRSGPFYFISGKDGNCEKGQKMI 497
Query: 146 ITV---QPKQDGWSPVPSPSPSPSLDLVTPEAPPSNAPWPASSVPRRSLLP 193
+ V + Q SP P SPSPS P P A P+ + S+LP
Sbjct: 498 LVVISPRGTQPPPSPPPKSSPSPSPKASPPSGSPPTAGEPSPAGTPPSVLP 650
>TC12369 weakly similar to UP|ENL1_ARATH (Q9SK27) Early nodulin-like protein
1 precursor (Phytocyanin-like protein), partial (47%)
Length = 574
Score = 70.9 bits (172), Expect = 1e-13
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +1
Query: 70 WTANKVFRLGDTLTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRW 129
W F++GD L + Y GGKD+V+ V+ D++ C++ G K+ + G +
Sbjct: 19 WAQRDRFQIGDHLVWKYDGGKDSVLEVSKEDYEKCNISSPIKEYNDGNTKVKLDHPGPFY 198
Query: 130 YISSVTDHCENGQKLFITVQPKQDGWSPVPSPSPSP-SLDLVTPEAPPSNAPWPASS 185
+IS HCE GQKL + V + G + SP+P S + T P+ AP P SS
Sbjct: 199 FISGAKGHCEKGQKLVVVVLSPRGGRNTGTDVSPAPASAPVPTGFEGPAVAPSPVSS 369
>TC14275 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (25%)
Length = 562
Score = 70.5 bits (171), Expect = 2e-13
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +1
Query: 67 YQTWTANKVFRLGDTLTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYG 126
Y+TW + K F++GD L FNY NV V + SC+ T+ ++ I G
Sbjct: 4 YRTWASGKTFKVGDILVFNYAASAHNVEEVTKQKYDSCNSTSPIATYTTPPVRVTIKKTG 183
Query: 127 RRWYISSVTDHCENGQKLFITVQPKQDGWSPVPSPSPSPSLDLVTPEAPPSNA 179
++I V HC GQKL I V +P S SPSPS T PP ++
Sbjct: 184 AHYFICGVPGHCLGGQKLSINVTGGSSTATPPSSASPSPSPSSST--TPPQDS 336
>TC13215 similar to UP|Q39040 (Q39040) Lamin, partial (15%)
Length = 452
Score = 69.7 bits (169), Expect = 3e-13
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Frame = +2
Query: 14 NKIKQRKSNTST--------STMALSRALFLFAFIATIFSTMAVAKDFVVGDEKGWTTLF 65
N ++ K+ TS+ S+ L+ +L L FI S + A D +VG +GW
Sbjct: 2 NSARE*KTTTSSLPNPKMAASSSHLTCSLLLLTFITFTISPVT-ATDHIVGANRGWNPGQ 178
Query: 66 DYQTWTANKVFRLGDTLTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTY 125
+Y W N+ F +GD ++F Y + NV VN + + +C+ +SG+D I++
Sbjct: 179 NYTLWANNQTFYVGDFISFRYQKNQYNVFEVNQTGYDNCTTEGAFGNYSSGKDFIMLNKT 358
Query: 126 GRRWYISSVTDHCENGQKLFITVQP 150
GR ++I C NG K+ + V P
Sbjct: 359 GRHYFICG-NGQCFNGMKVSVVVHP 430
>TC19996 weakly similar to UP|ENL1_ARATH (Q9SK27) Early nodulin-like protein
1 precursor (Phytocyanin-like protein), partial (36%)
Length = 458
Score = 67.4 bits (163), Expect = 2e-12
Identities = 38/118 (32%), Positives = 53/118 (44%)
Frame = +3
Query: 14 NKIKQRKSNTSTSTMALSRALFLFAFIATIFSTMAVAKDFVVGDEKGWTTLFDYQTWTAN 73
N + ++ TM S + L AF T+F D VGD GW DY TW +
Sbjct: 45 NSENREEAIDMAKTMVASLLVLLVAF-PTVFGA-----DHTVGDASGWNIGVDYTTWASG 206
Query: 74 KVFRLGDTLTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWYI 131
K F++GD L F Y V V+ S +KSCS + G K+ +T G ++I
Sbjct: 207 KTFKVGDNLVFTYSSSLHGVDEVDESSYKSCSTSSPIKTYSDGNTKVALTKAGTLYFI 380
>AV407087
Length = 363
Score = 59.7 bits (143), Expect = 3e-10
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +3
Query: 26 STMALSRALFLFAFIATIFSTMAVAKDFVVGDEKG-WTTLFDYQTWTANKVFRLGDTLTF 84
+ M + + + + +AT+ +A+A D +VG G W + Q+W ++ F +GD L F
Sbjct: 18 ANMGVLQVIIRLSLVATLIK-LAMATDHIVGGPNGGWDATSNLQSWGTSQQFSVGDNLIF 194
Query: 85 NYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWYISSVTDHCENG 141
Y NV+ V +D+ SC + G I +++ G+R++I HC G
Sbjct: 195 QY-QPNHNVIEVTKADYDSCQATSPIQSYSDGATTIPLSSPGKRYFICGAIGHCTQG 362
>TC17556 similar to UP|Q39131 (Q39131) Lamin (AT5G15350/F8M21_240), partial
(68%)
Length = 595
Score = 57.8 bits (138), Expect = 1e-09
Identities = 42/157 (26%), Positives = 66/157 (41%), Gaps = 7/157 (4%)
Frame = +2
Query: 34 LFLFAFIATIFSTMAVAKDFVVGDEKGWTTLFDYQTWTANKVFRLGDTLTFNYVGGKDNV 93
L F + AK ++VGD K W +Y W +K F + D L F Y + NV
Sbjct: 119 LLFLGFAVLLMVPEVSAKRWLVGDGKFWNPNVNYTVWARDKHFYIDDWLFFVYDRNQMNV 298
Query: 94 VRVNGSDFKSCSV--PLTAPVLTSGQDKIIITTYGRRWYISSVTDHCENGQKLFITVQPK 151
+ VN +++++C P+ +G+D ++ R +Y S C G KL + V+
Sbjct: 299 LEVNKTNYENCIAEHPIHNWTTGAGRD-VVPLNVTRHYYFISGNGFCYGGMKLAVRVEKL 475
Query: 152 QDGWSPVPSPSPSPSLD-----LVTPEAPPSNAPWPA 183
P + +PSL L+ P A W A
Sbjct: 476 PPPPKAAPEKAGAPSLSSRGAILLMPVVFAIGAAWDA 586
>TC14908 weakly similar to PIR|A86218|A86218 protein T27G7.18 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(68%)
Length = 1219
Score = 55.5 bits (132), Expect = 6e-09
Identities = 57/210 (27%), Positives = 80/210 (37%), Gaps = 32/210 (15%)
Frame = +2
Query: 17 KQRKSNTSTSTMALSR-ALFLFAFIATIFSTMAVAKDFVVGDEKGWTTLFD-----YQTW 70
K + S+S + S+ + FL I ++ K++ VGD GW + YQ W
Sbjct: 92 KMEQGRRSSSCLLCSKVSCFLLLLIFCFSGSVEAYKNYTVGDSLGWFDNLEKPHVNYQKW 271
Query: 71 TANKVFRLGDTLTFNYVGGKDNVVRVNGSDFKSCSV----------------------PL 108
ANK F LGD L FN V N + +K C P+
Sbjct: 272 VANKEFSLGDFLIFNTDTNHTVVQTYNFTTYKQCDYNDAQDKDTTQWSSSDPSNTEIHPV 451
Query: 109 TA--PVLTSGQDKIIITTYGRRWYISSVTDHCENGQKLFITVQPKQDGWSPVPSPSPSPS 166
TA P++ G + + Y D C+NGQ I V Q +P SPS
Sbjct: 452 TAAVPLVKEGMNYFFSSDYD--------GDQCKNGQHFKINVTYGQG----LPKSLRSPS 595
Query: 167 LDLVTPEAPPS--NAPWPASSVPRRSLLPK 194
D +P +P S + P + VP PK
Sbjct: 596 EDSPSPASPVSGDDDAAPDTIVPSNFSHPK 685
>TC9870 weakly similar to UP|NO16_MEDTR (P93328) Early nodulin 16 precursor
(N-16), partial (31%)
Length = 581
Score = 48.9 bits (115), Expect = 6e-07
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Frame = +1
Query: 82 LTFNYVGGKDNVVRVNGSDFKSCSVP-LTAPVLTSGQDKIIITTYGRRWYISSVTDHCEN 140
L F Y ++V VN D+ C V V G +K++ G +IS DHC+
Sbjct: 1 LIFTYDNETESVHVVNEEDYLKCKVEGEDHEVYLEGYNKVVFNRSGSHLFISGKDDHCKM 180
Query: 141 GQKLFITVQPKQ----------DGWSPVPSPSPSPSLDLVTPEAPPSNAPWPASS 185
G KL + V + D S PSPSP+PS + P+ +P PAS+
Sbjct: 181 GLKLAVVVMSHRHHTEILSSNSDPSSLSPSPSPAPS-----SSSSPTPSPSPASN 330
>TC14276 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (16%)
Length = 624
Score = 46.2 bits (108), Expect = 4e-06
Identities = 30/91 (32%), Positives = 39/91 (41%), Gaps = 1/91 (1%)
Frame = +3
Query: 96 VNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWYISSVTDHCENGQKLFITVQPKQDGW 155
V + SC+ T+ ++ I G ++I V HC GQKL I V
Sbjct: 3 VTKQKYDSCNSTSPIATYTTPPVRVTIKKTGAHYFICGVPGHCLGGQKLSINVTGGSSTA 182
Query: 156 SPVPSPSPSPS-LDLVTPEAPPSNAPWPASS 185
+P S SPSPS TP S P P+SS
Sbjct: 183 TPPSSASPSPSPSSSTTPSPSSSTTPSPSSS 275
>AV764731
Length = 166
Score = 40.4 bits (93), Expect = 2e-04
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 53 FVVGDEKGWTTLFDYQTWTANKVFRLGDTLTFNYVGGKDNVVRVNGSDFKSC 104
+ VG GWT F+ W K FR DTL + + G NVV VN + + +C
Sbjct: 2 YTVGGAGGWT--FNTVGWPKGKRFRAADTLEYKFGAGAHNVVAVNKAAYDTC 151
>AV413520
Length = 280
Score = 39.7 bits (91), Expect = 4e-04
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +1
Query: 48 AVAKDFVVGDEKGWTTLFD-----YQTWTANKVFRLGDTLTFNYVGG 89
+ A +FVVG +KGW+ D + W F++GD+L FNY G
Sbjct: 139 SAAYEFVVGGQKGWSVPSDPNFNPFNQWAEKSRFQVGDSLVFNYQSG 279
>BP046587
Length = 502
Score = 37.7 bits (86), Expect = 0.001
Identities = 20/69 (28%), Positives = 34/69 (48%)
Frame = -3
Query: 82 LTFNYVGGKDNVVRVNGSDFKSCSVPLTAPVLTSGQDKIIITTYGRRWYISSVTDHCENG 141
+ F Y + NV VN + + +C+ +SG+D I++ GR ++I C NG
Sbjct: 464 VAFRYQKNQYNVFEVNQTGYDNCTTEGAFGNYSSGKDFIMLNKTGRHYFICG-NGQCFNG 288
Query: 142 QKLFITVQP 150
K+ + V P
Sbjct: 287 MKVSVVVHP 261
>TC17387
Length = 586
Score = 35.4 bits (80), Expect = 0.007
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 132 SSVTDHCENGQKLFITVQPKQDGWSPVPSPSPSPSLDLVTPEAPPSNAPWPASSVPR 188
++ T Q + IT K + +PV P S + L E PPS++P PASS PR
Sbjct: 172 TTTTTSLIQNQGIAITSFGKMERSTPVRKPHTSTADLLTWSETPPSDSPAPASSAPR 342
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,754,474
Number of Sequences: 28460
Number of extensions: 60461
Number of successful extensions: 1436
Number of sequences better than 10.0: 272
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of query: 203
length of database: 4,897,600
effective HSP length: 86
effective length of query: 117
effective length of database: 2,450,040
effective search space: 286654680
effective search space used: 286654680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC137822.5