Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137822.17 - phase: 0 
         (418 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV414197                                                               42  2e-04
BP039009                                                               36  0.010
TC15919 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, p...    28  2.8
TC17540 homologue to UP|Q94AY8 (Q94AY8) At1g05140/YUP8H12_25, pa...    28  2.8
AV773224                                                               28  3.7
TC17803                                                                27  6.3

>AV414197 
          Length = 270

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 23/80 (28%), Positives = 40/80 (49%)
 Frame = +2

Query: 46  GNLRGKREDIFSILQNRLVEATGDKYNLFMVEEPDSDSPDPRGGPRVSFGLLRKEVSEPE 105
           GNLRG+    +  +  RL +  GD+Y LF++  P+ D P     PR++         +PE
Sbjct: 2   GNLRGQPGKSYEKISKRLQDKFGDEYRLFLLVNPEDDKPVAVVVPRITL--------QPE 157

Query: 106 ETTLWQYVVASLLFLLTIGT 125
              + +++ A    L+T+ T
Sbjct: 158 TAAVPEWLAAGAFGLVTVFT 217


>BP039009 
          Length = 139

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -1

Query: 402 VWDELAEELGIGLVTT 417
           VWDELAEELGIGLVTT
Sbjct: 139 VWDELAEELGIGLVTT 92


>TC15919 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, partial
           (21%)
          Length = 523

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 25/78 (32%), Positives = 32/78 (40%), Gaps = 1/78 (1%)
 Frame = +2

Query: 117 LLFLLTIGTSVEVG-IASQINRLPPELVKFLTDPNYTEAPDMEMLYPFVESALPLAYGVL 175
           LL LL    S+E   +   +N  PP  V  LTDPN    P        VE  L     VL
Sbjct: 95  LLPLLLSPPSIEANNLIRDLNLFPPRDVNILTDPNLA-LPPSNNTTRIVEKPLRFP-NVL 268

Query: 176 GVLLFHEVGHFLAAFPKQ 193
           G +   ++ H    +P Q
Sbjct: 269 GGVSLDDLAHRAGYYPIQ 322


>TC17540 homologue to UP|Q94AY8 (Q94AY8) At1g05140/YUP8H12_25, partial (12%)
          Length = 487

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 165 ESALPLAYGVLGVLLFHEVGHFLAAFPKQVKLS 197
           +S L  A  +  +++ HE GHFLAA  + +++S
Sbjct: 376 QSVLEAAAVLTAIIVVHETGHFLAASLQGIRVS 474


>AV773224 
          Length = 547

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 11/37 (29%), Positives = 22/37 (58%)
 Frame = -1

Query: 91  RVSFGLLRKEVSEPEETTLWQYVVASLLFLLTIGTSV 127
           ++ F  + ++V+E     LW Y ++SLL L+ +G  +
Sbjct: 160 KLPFSFMSEKVNERNGCNLWFY*LSSLLHLIRVGACI 50


>TC17803 
          Length = 485

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 3/41 (7%)
 Frame = +2

Query: 330 GKGATMVFGLTTYTLLGLGVLGG---PLSLAWGFFVIFSQR 367
           G G    FG     LLGLGV GG    + L WGF   F  +
Sbjct: 65  GFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSK 187


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.143    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,906,716
Number of Sequences: 28460
Number of extensions: 93088
Number of successful extensions: 413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of query: 418
length of database: 4,897,600
effective HSP length: 93
effective length of query: 325
effective length of database: 2,250,820
effective search space: 731516500
effective search space used: 731516500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)


Medicago: description of AC137822.17