
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137822.17 - phase: 0
(418 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV414197 42 2e-04
BP039009 36 0.010
TC15919 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, p... 28 2.8
TC17540 homologue to UP|Q94AY8 (Q94AY8) At1g05140/YUP8H12_25, pa... 28 2.8
AV773224 28 3.7
TC17803 27 6.3
>AV414197
Length = 270
Score = 41.6 bits (96), Expect = 2e-04
Identities = 23/80 (28%), Positives = 40/80 (49%)
Frame = +2
Query: 46 GNLRGKREDIFSILQNRLVEATGDKYNLFMVEEPDSDSPDPRGGPRVSFGLLRKEVSEPE 105
GNLRG+ + + RL + GD+Y LF++ P+ D P PR++ +PE
Sbjct: 2 GNLRGQPGKSYEKISKRLQDKFGDEYRLFLLVNPEDDKPVAVVVPRITL--------QPE 157
Query: 106 ETTLWQYVVASLLFLLTIGT 125
+ +++ A L+T+ T
Sbjct: 158 TAAVPEWLAAGAFGLVTVFT 217
>BP039009
Length = 139
Score = 36.2 bits (82), Expect = 0.010
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -1
Query: 402 VWDELAEELGIGLVTT 417
VWDELAEELGIGLVTT
Sbjct: 139 VWDELAEELGIGLVTT 92
>TC15919 similar to UP|Q9XH61 (Q9XH61) Serine carboxypeptidase, partial
(21%)
Length = 523
Score = 28.1 bits (61), Expect = 2.8
Identities = 25/78 (32%), Positives = 32/78 (40%), Gaps = 1/78 (1%)
Frame = +2
Query: 117 LLFLLTIGTSVEVG-IASQINRLPPELVKFLTDPNYTEAPDMEMLYPFVESALPLAYGVL 175
LL LL S+E + +N PP V LTDPN P VE L VL
Sbjct: 95 LLPLLLSPPSIEANNLIRDLNLFPPRDVNILTDPNLA-LPPSNNTTRIVEKPLRFP-NVL 268
Query: 176 GVLLFHEVGHFLAAFPKQ 193
G + ++ H +P Q
Sbjct: 269 GGVSLDDLAHRAGYYPIQ 322
>TC17540 homologue to UP|Q94AY8 (Q94AY8) At1g05140/YUP8H12_25, partial (12%)
Length = 487
Score = 28.1 bits (61), Expect = 2.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 165 ESALPLAYGVLGVLLFHEVGHFLAAFPKQVKLS 197
+S L A + +++ HE GHFLAA + +++S
Sbjct: 376 QSVLEAAAVLTAIIVVHETGHFLAASLQGIRVS 474
>AV773224
Length = 547
Score = 27.7 bits (60), Expect = 3.7
Identities = 11/37 (29%), Positives = 22/37 (58%)
Frame = -1
Query: 91 RVSFGLLRKEVSEPEETTLWQYVVASLLFLLTIGTSV 127
++ F + ++V+E LW Y ++SLL L+ +G +
Sbjct: 160 KLPFSFMSEKVNERNGCNLWFY*LSSLLHLIRVGACI 50
>TC17803
Length = 485
Score = 26.9 bits (58), Expect = 6.3
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 3/41 (7%)
Frame = +2
Query: 330 GKGATMVFGLTTYTLLGLGVLGG---PLSLAWGFFVIFSQR 367
G G FG LLGLGV GG + L WGF F +
Sbjct: 65 GFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSK 187
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.143 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,906,716
Number of Sequences: 28460
Number of extensions: 93088
Number of successful extensions: 413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of query: 418
length of database: 4,897,600
effective HSP length: 93
effective length of query: 325
effective length of database: 2,250,820
effective search space: 731516500
effective search space used: 731516500
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC137822.17