BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137822.11 - phase: 0
(121 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10188 similar to UP|Q941N0 (Q941N0) Drought-induced protein, p... 159 1e-40
TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, p... 107 7e-25
TC10970 similar to GB|AAA32722.1|166570|ATH18RAB glycine rich pr... 37 7e-04
AV429175 36 0.002
TC19117 weakly similar to UP|AAR29056 (AAR29056) Triacylglycerol... 35 0.004
AV425832 35 0.004
TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-bindi... 35 0.005
TC15237 similar to UP|AAQ24632 (AAQ24632) GPRP, partial (64%) 34 0.008
AV409412 33 0.010
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 33 0.013
BP033767 33 0.013
BP034485 33 0.013
TC13338 similar to UP|Q9ZTZ4 (Q9ZTZ4) IFA-binding protein, parti... 33 0.017
TC18725 similar to UP|BAC83841 (BAC83841) Late embryogenesis abu... 32 0.023
AV415539 32 0.030
TC14611 similar to UP|Q8LPB2 (Q8LPB2) Glycine-rich RNA binding p... 32 0.030
AW719960 32 0.039
TC19435 similar to UP|Q39036 (Q39036) NADPH-ferrihemoprotein red... 31 0.051
BF177754 31 0.066
AW720001 30 0.086
>TC10188 similar to UP|Q941N0 (Q941N0) Drought-induced protein, partial
(84%)
Length = 747
Score = 159 bits (402), Expect = 1e-40
Identities = 89/145 (61%), Positives = 101/145 (69%), Gaps = 24/145 (16%)
Frame = +3
Query: 1 MAGIMNKIGDALHIGGDKKEGE----HKGEQHG---------HVGGEHHGEY-----KGE 42
MAGI+NKI + L GG KKEGE KGEQH H GGEH GE+ KGE
Sbjct: 69 MAGIVNKITETL--GGHKKEGETHGEFKGEQHHGAGGDYKGEHYGGEHKGEHYGGEHKGE 242
Query: 43 QHGFVG-GHGGEHKGEQHG---FGHG-DHKEGHHGEEHKEGFVDKIKDKIHGEGADG-EK 96
HG G GHGGE KGE HG FGHG +HK HHG+E+KEGF+DK+KDKIHG+ +G EK
Sbjct: 243 SHGIGGFGHGGEQKGESHGIGGFGHGGEHKPEHHGQENKEGFLDKVKDKIHGDEGEGVEK 422
Query: 97 KKKKEKKKHGEGHEHGHDSSSSDSD 121
KKKK++KKH GHEHGHDSSSSDSD
Sbjct: 423 KKKKDRKKHEHGHEHGHDSSSSDSD 497
>TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, partial
(59%)
Length = 564
Score = 107 bits (266), Expect = 7e-25
Identities = 64/127 (50%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Frame = +3
Query: 1 MAGIMNKIGDALHIGGDKKEGEHKGEQHGHVGGEHHGEYKGEQHGFVGGHGGEHKGEQHG 60
M+GI+NKIG+ALH+GG HK E+ H EHHG+ H GEHK +Q
Sbjct: 18 MSGIINKIGEALHVGGG-----HKKEEEHHKKEEHHGD----------AHKGEHKSDQ-- 146
Query: 61 FGHGDHKEGHHGEEHKEGFVDKIKDKIHGE--GADGEKKKKKEKK-KHGEGHEHGHD--- 114
HHG EHKEG VDKIKDKIHG+ G ++K KK+KK K + HEHGHD
Sbjct: 147 ---------HHGGEHKEGIVDKIKDKIHGDEKGEKHDEKNKKDKKDKKKKKHEHGHDHDS 299
Query: 115 SSSSDSD 121
SSSSDSD
Sbjct: 300 SSSSDSD 320
>TC10970 similar to GB|AAA32722.1|166570|ATH18RAB glycine rich protein
{Arabidopsis thaliana;} , partial (25%)
Length = 697
Score = 37.4 bits (85), Expect = 7e-04
Identities = 30/97 (30%), Positives = 39/97 (39%), Gaps = 30/97 (30%)
Frame = +2
Query: 25 GEQHGHVGGEHHGEYKGEQHGF-VGGHGGEH---------------------KGEQHGFG 62
G +G G HG G G+ GGHG E+ H +G
Sbjct: 38 GTDYGTTGTHGHGT-TGTGTGYGTGGHGTEYGTTGTGGGVMDKIKEKLPCAGSTATHEYG 214
Query: 63 HGDHK------EGHHGEEH--KEGFVDKIKDKIHGEG 91
G GHHGE+H K+G +DKIK+K+ G G
Sbjct: 215 SGGTTGTTTTTTGHHGEQHHEKKGIMDKIKEKLPGTG 325
>AV429175
Length = 317
Score = 36.2 bits (82), Expect = 0.002
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -2
Query: 102 KKKHGEGHEHGHDSSSSDSD 121
+KKH GH+HGHD++SSDS+
Sbjct: 313 RKKHEHGHKHGHDTTSSDSN 254
>TC19117 weakly similar to UP|AAR29056 (AAR29056) Triacylglycerol/steryl
ester lipase-like protein, partial (16%)
Length = 822
Score = 35.0 bits (79), Expect = 0.004
Identities = 20/48 (41%), Positives = 24/48 (49%)
Frame = -3
Query: 71 HGEEHKEGFVDKIKDKIHGEGADGEKKKKKEKKKHGEGHEHGHDSSSS 118
H E EG V + + GE+KKKKEKK+H E H SS S
Sbjct: 292 HAEAEPEGLVLR--------HSHGEEKKKKEKKRHAEDLTRNHPSSES 173
>AV425832
Length = 426
Score = 35.0 bits (79), Expect = 0.004
Identities = 20/55 (36%), Positives = 27/55 (48%)
Frame = +3
Query: 1 MAGIMNKIGDALHIGGDKKEGEHKGEQHGHVGGEHHGEYKGEQHGFVGGHGGEHK 55
+AG+ G+ IGG + E+ GH GGEHH E G G G+G H+
Sbjct: 234 LAGVCEDPGEGSLIGGHVRSDMRVVEE-GHGGGEHHRE*MGRISGGDRGYGAGHR 395
>TC15523 similar to UP|GRPA_MAIZE (P10979) Glycine-rich RNA-binding,
abscisic acid-inducible protein, complete
Length = 972
Score = 34.7 bits (78), Expect = 0.005
Identities = 23/67 (34%), Positives = 27/67 (39%), Gaps = 3/67 (4%)
Frame = +2
Query: 15 GGDKKEGEHKGEQHGHVGGEHHGEYKGEQHGFVGGHGGEHKG---EQHGFGHGDHKEGHH 71
GG G G + G GG Y G G GG GG G E G G+G +EG
Sbjct: 605 GGGGGGGYGGGRREGGYGGGGGSRYSGGGGGGYGGSGGGGYGGRREGGGGGYGGSREGGG 784
Query: 72 GEEHKEG 78
G + G
Sbjct: 785 GSRYSSG 805
>TC15237 similar to UP|AAQ24632 (AAQ24632) GPRP, partial (64%)
Length = 814
Score = 33.9 bits (76), Expect = 0.008
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Frame = +2
Query: 28 HGHVGGEHHGEYKGEQHGFV-------GGHGGEHKGEQHG-FGHGDHKEGHHGEEHKEGF 79
HGH G + HG G G HG HG + HG + +G H
Sbjct: 362 HGHGGHQGHGGMGAMLAGGAAAAAAAYGAHGAHAAHGAHGGYAHGGYAQGGH-------- 517
Query: 80 VDKIKDKIHGEGADGEKKKKKEKKKHGEGHEHG 112
+ K K HG+ G K K K KHG+ +HG
Sbjct: 518 MGHGKFKQHGKFKHG-KHGKFGKHKHGKFGKHG 613
Score = 30.4 bits (67), Expect = 0.086
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 21 GEHKGEQHGHVGGEHHGEYKGEQHGFVGGHGGEHK 55
G K +QHG HG++ +HG G HGG K
Sbjct: 521 GHGKFKQHGKFKHGKHGKFGKHKHGKFGKHGGFKK 625
Score = 30.0 bits (66), Expect = 0.11
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 15 GGDKKEGEHKGEQHGHVGGEHHGEYKGEQHGFVGGHGGEHKGEQHGF 61
GG G +G GH + HG++K +HG G H G+ GF
Sbjct: 479 GGYAHGGYAQGGHMGHGKFKQHGKFKHGKHGKFGKHKHGKFGKHGGF 619
>AV409412
Length = 426
Score = 33.5 bits (75), Expect = 0.010
Identities = 27/72 (37%), Positives = 32/72 (43%), Gaps = 6/72 (8%)
Frame = -2
Query: 9 GDALHIGGDKKEG------EHKGEQHGHVGGEHHGEYKGEQHGFVGGHGGEHKGEQHGFG 62
G+ + GGD EG E GE+ G VGGE E GE G G E +GE+
Sbjct: 425 GEGVVEGGDDVEGGGGGGGEEGGEEGGGVGGEVADEVDGEGDG--DGREREGEGER*WSR 252
Query: 63 HGDHKEGHHGEE 74
G G GEE
Sbjct: 251 EGFLDGGREGEE 216
Score = 24.3 bits (51), Expect = 6.2
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 48 GGHGGEHKGEQHGFGHGDHKEGHHGEEHKEGFVDKIKDKIHGEGADGEKKKKKEKKKHGE 107
GG GGE GE+ G G ++ D++ GEG DG+ ++++ GE
Sbjct: 383 GGGGGEEGGEEGG-----------------GVGGEVADEVDGEG-DGDGRERE-----GE 273
Query: 108 G 108
G
Sbjct: 272 G 270
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 33.1 bits (74), Expect = 0.013
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 8 IGDALHIGGDKKEGEHKGEQHGHVGGEHHGEYKGE--QHGFVGGHGGEHKGEQHGFGHGD 65
+ +A GG G G +G GG G Y G G+ GG GG G G G+G
Sbjct: 301 VNEAQARGGGGGGGGRGGGGYGGGGGRREGGYGGGGGSRGYGGGGGGYGGGG--GGGYGG 474
Query: 66 HKEGHHG 72
+EG +G
Sbjct: 475 RREGGYG 495
Score = 28.9 bits (63), Expect = 0.25
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 8/58 (13%)
Frame = +1
Query: 15 GGDKKEGEHKGEQH--------GHVGGEHHGEYKGEQHGFVGGHGGEHKGEQHGFGHG 64
GG ++EG + G G GG G Y G + G G+GG+ G ++G G G
Sbjct: 370 GGGRREGGYGGGGGSRGYGGGGGGYGGGGGGGYGGRREG---GYGGDGGGSRYGSGGG 534
>BP033767
Length = 541
Score = 33.1 bits (74), Expect = 0.013
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = -3
Query: 1 MAGIMNKIGDALHIGGDKKEGEH-----KGEQHGHVGGEHHGEYKGEQHGFVGGHGGEHK 55
+ G++ A+ GGD+ +G+ G+ VGG G + ++ G VGG GGE
Sbjct: 512 VGGVVFAAASAVDEGGDRDDGDGAGDGGNGDAEELVGGFGFGGLREDEGGDVGGEGGEGG 333
Query: 56 GEQ 58
G +
Sbjct: 332 GRR 324
>BP034485
Length = 485
Score = 33.1 bits (74), Expect = 0.013
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 27/126 (21%)
Frame = +3
Query: 15 GGDK-KEGEHKGEQHGHVGGEHHGEYKGEQHGFV---------------GGHGGE----- 53
GG+K KEG+ KG G + + K + G GG GGE
Sbjct: 6 GGNKSKEGKQKGGGGGDSSSDKKKKTKDKNGGGFLVKFLGLGKKSKKGGGGGGGETANKN 185
Query: 54 -HKGEQHGFGHGDHKEGHHGEEHKEGFVDKIKDK-----IHGEGADGEKKKKKEKKKHGE 107
+K + +G G+ KEG G G +DKI I G G K K +
Sbjct: 186 KNKNKNNGGGNNKGKEGKKGGGGG-GKLDKIDFDFQDFDIPSHGKSGGKGGGGGGKGNKN 362
Query: 108 GHEHGH 113
GH+HGH
Sbjct: 363 GHDHGH 380
Score = 24.6 bits (52), Expect = 4.7
Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 2/34 (5%)
Frame = +3
Query: 41 GEQHGFVGGHGGE--HKGEQHGFGHGDHKEGHHG 72
G+ G GG GG+ G HG G G + G+ G
Sbjct: 312 GKSGGKGGGGGGKGNKNGHDHGHGIGGNMNGNGG 413
>TC13338 similar to UP|Q9ZTZ4 (Q9ZTZ4) IFA-binding protein, partial (12%)
Length = 530
Score = 32.7 bits (73), Expect = 0.017
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 17 DKKEGEHKGEQHGHVGGEHHG---EYKGEQHGFVGGHGGEHKGEQ 58
D EH E++G+ G HH ++KG +GF G+G H+G +
Sbjct: 388 DTNSNEHLCEENGN--GYHHDHDDDHKGHVNGFANGNGKHHQGRK 516
Score = 30.4 bits (67), Expect = 0.086
Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Frame = +1
Query: 20 EGEHKGEQHGHVGGEHHGEYKGEQHGFVGGHGGEHKGEQHGF--GHGDHKEG 69
E EH E EH E G +G+ H +HKG +GF G+G H +G
Sbjct: 361 EEEHSFEFDDTNSNEHLCEENG--NGYHHDHDDDHKGHVNGFANGNGKHHQG 510
>TC18725 similar to UP|BAC83841 (BAC83841) Late embryogenesis abundant
proteins-like, partial (39%)
Length = 552
Score = 32.3 bits (72), Expect = 0.023
Identities = 15/31 (48%), Positives = 19/31 (60%)
Frame = +2
Query: 61 FGHGDHKEGHHGEEHKEGFVDKIKDKIHGEG 91
F + HKE EE K GF++K+KD IH G
Sbjct: 71 FKNEKHKEDDGKEEGKGGFIEKVKDFIHDIG 163
>AV415539
Length = 419
Score = 32.0 bits (71), Expect = 0.030
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Frame = -3
Query: 15 GGDKKEGE-----HKGEQHGHVGGEHH--GEYKGEQHGFVGGHGGEHKG 56
GGD+ GE E G GE GE + E G VGG+GGE +G
Sbjct: 180 GGDEGHGEAVDCREVAEWDGAAAGEEEREGEVEEEGEGEVGGYGGEEEG 34
Score = 29.3 bits (64), Expect = 0.19
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Frame = -3
Query: 13 HIGGDKKEGEHKGEQHGHVGGEHHGEYKGE-QHGF-----------VGGHGGEHKGEQHG 60
H+ ++ E E+H G GE + + GF +GG GGE GE G
Sbjct: 357 HVEEPREVVEVGPEEHAPGGSGSEGETEEPFKRGFGAAPEPARVADLGGGGGECSGENSG 178
Query: 61 FGHGDHKEGHHGEEHKEGFVDKIKDKIHGEGADGEKKKKKEKKKHGEGHEHGH 113
G HGE VD + A GE++++ E ++ GEG G+
Sbjct: 177 GDEG------HGEA-----VDCREVAEWDGAAAGEEEREGEVEEEGEGEVGGY 52
Score = 26.2 bits (56), Expect = 1.6
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = -3
Query: 10 DALHIGGDKKEGEHKGEQHGHVGGEHHGEYKGEQHG 45
D G +++EGE + E G VGG Y GE+ G
Sbjct: 126 DGAAAGEEEREGEVEEEGEGEVGG-----YGGEEEG 34
>TC14611 similar to UP|Q8LPB2 (Q8LPB2) Glycine-rich RNA binding protein,
partial (20%)
Length = 760
Score = 32.0 bits (71), Expect = 0.030
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +3
Query: 45 GFVGGHGGEHKGEQHGFGHGDHKEGHHGEEHKEGFVDKIKDKI---HGEGADGEKKKKKE 101
G+ GG+GG + E G+G E G E++ G+ K G G G + +++
Sbjct: 9 GYGGGYGGRSEEENPGYGRKTEYE-TGGSEYESGYGGGRKPSYGEEQGSGYGGRSEYEEK 185
Query: 102 KKKHGEGHEHGHD 114
K +G + G +
Sbjct: 186 KPSYGRSNYEGQE 224
Score = 28.9 bits (63), Expect = 0.25
Identities = 20/79 (25%), Positives = 35/79 (43%)
Frame = +3
Query: 32 GGEHHGEYKGEQHGFVGGHGGEHKGEQHGFGHGDHKEGHHGEEHKEGFVDKIKDKIHGEG 91
GG + G + E G+ E G ++ G+G ++ +GEE G+ G
Sbjct: 15 GGGYGGRSEEENPGYGRKTEYETGGSEYESGYGGGRKPSYGEEQGSGY---------GGR 167
Query: 92 ADGEKKKKKEKKKHGEGHE 110
++ E+KK + + EG E
Sbjct: 168 SEYEEKKPSYGRSNYEGQE 224
>AW719960
Length = 449
Score = 31.6 bits (70), Expect = 0.039
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 37 GEYKGEQH-GFVGGHGGEHKGEQHGFGHGDHKEGHHGEEHKEGFVDKIKDKIHGEGADGE 95
G Y G G+ G GG G G KEG G+E K+G K K EG +G+
Sbjct: 258 GAYPGAPAAGYPGAPGGAPGYGTPGHSAGSGKEGKKGKEGKDG-----KKK---EGKEGK 413
Query: 96 KKKKKEKKK 104
K K+ +K K
Sbjct: 414 KGKEGKKAK 440
>TC19435 similar to UP|Q39036 (Q39036) NADPH-ferrihemoprotein reductase ,
partial (12%)
Length = 459
Score = 31.2 bits (69), Expect = 0.051
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 20 EGEHKGEQHGHVGGEHHGEYKGEQHGFVGGHGGEHKGEQHGFGHGDH 66
E + ++ G GGE H E E G G GG+ + F HG H
Sbjct: 256 ENDDAADEDGDGGGEDHDELILEDDGAGAGGGGDVGRVECAFDHGGH 116
>BF177754
Length = 416
Score = 30.8 bits (68), Expect = 0.066
Identities = 13/39 (33%), Positives = 25/39 (63%)
Frame = +2
Query: 67 KEGHHGEEHKEGFVDKIKDKIHGEGADGEKKKKKEKKKH 105
+E H ++ K+ + K+K +G DG+ K+K++K+KH
Sbjct: 53 REKKHKKDKKDKEKKESKEKREKDGKDGKHKEKEKKEKH 169
Score = 26.2 bits (56), Expect = 1.6
Identities = 14/39 (35%), Positives = 20/39 (50%)
Frame = +2
Query: 66 HKEGHHGEEHKEGFVDKIKDKIHGEGADGEKKKKKEKKK 104
HK+ +E KE + KD G+ + EKK+K KK
Sbjct: 65 HKKDKKDKEKKESKEKREKDGKDGKHKEKEKKEKHRDKK 181
>AW720001
Length = 542
Score = 30.4 bits (67), Expect = 0.086
Identities = 19/51 (37%), Positives = 25/51 (48%), Gaps = 3/51 (5%)
Frame = +3
Query: 56 GEQHGFGHGDHKEGHHGEEHKEGFVDKI---KDKIHGEGADGEKKKKKEKK 103
G+ G GD KE +E K+ K K K DG+KKK+K+KK
Sbjct: 12 GDSDGSDSGDEKEKPAKKEPKKDLPSKASTSKKKPRDADEDGKKKKQKKKK 164
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.307 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,718,265
Number of Sequences: 28460
Number of extensions: 50440
Number of successful extensions: 547
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of query: 121
length of database: 4,897,600
effective HSP length: 79
effective length of query: 42
effective length of database: 2,649,260
effective search space: 111268920
effective search space used: 111268920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 49 (23.5 bits)
Medicago: description of AC137822.11