BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137821.5 - phase: 0
(589 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 225 3e-88
TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesteras... 258 1e-69
TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%) 251 2e-67
TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precu... 210 6e-55
AV426815 201 2e-52
TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase ... 200 5e-52
TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precu... 170 5e-43
TC18838 weakly similar to PIR|PC4168|PC4168 pectinesterase 2 pr... 91 1e-35
AV765593 137 4e-33
AI967495 135 1e-32
TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase ... 126 1e-29
AU089161 65 2e-28
TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isof... 119 1e-27
CN825195 117 4e-27
TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precur... 116 9e-27
BP039243 106 9e-24
BP050971 101 3e-22
BF177669 100 5e-22
TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like... 98 3e-21
BP033848 89 2e-18
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 225 bits (573), Expect(2) = 3e-88
Identities = 111/188 (59%), Positives = 137/188 (72%)
Frame = +2
Query: 284 DGSGNFKTVSEAVAAAPLKSSKRYVIKIKAGVYKENVEVPKKKTNIMFLGDGRTNTIITG 343
DGSGN+ TV EAV AAP S KR+VI +K GVY+E E+ KKK NIM +GDG T+I+G
Sbjct: 29 DGSGNYTTVMEAVLAAPDYSMKRFVIYVKKGVYEEYAEIKKKKWNIMMVGDGMDVTVISG 208
Query: 344 SRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPAKHQAVALRVGADLSAFYNCDIIA 403
+R+ DG TTF SAT A+ G F+AR ITFQNTAGP KHQAVALR +DL+ F+ C I
Sbjct: 209 NRSFGDGWTTFKSATFAVSGRGFIARGITFQNTAGPEKHQAVALRSDSDLAVFFRCSITG 388
Query: 404 YQDTLYVHNNRQFFVNCFISGTVDFIFGNSAVVFQNCDIHARRPNSGQKNMVTAQGRVDP 463
YQD+LY H RQF+ C I+GTVDFIFG++ VFQNC+I AR+ QKN +TAQGR DP
Sbjct: 389 YQDSLYPHTMRQFYKECRITGTVDFIFGDATAVFQNCNIQARKGLQDQKNTITAQGRKDP 568
Query: 464 NQNTGIVI 471
Q++G +
Sbjct: 569 GQSSGFFV 592
Score = 117 bits (294), Expect(2) = 3e-88
Identities = 62/118 (52%), Positives = 74/118 (62%)
Frame = +3
Query: 472 QKCRIGATKDLEGVKGNFPTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNGNFALNTL 531
Q C I A +L G+ TYLGRPWKEYSRTVFMQS +SDV+ GW EWN +F +TL
Sbjct: 594 QYCNITADSELLPSVGSIQTYLGRPWKEYSRTVFMQSFMSDVVSSQGWLEWNTSFD-DTL 770
Query: 532 VYREYQNTGPGAGTSKRVTWKGFKVITSAAEAQSFTPGNFIGGSSWLGSTGFPFSLGL 589
Y EY N G GAG RV W G+ V+ +EA FT FI G+ WL STG ++ GL
Sbjct: 771 FYGEYLNYGAGAGVGNRVKWGGYHVLND-SEAGKFTVNQFIEGNLWLPSTGVAYTGGL 941
>TC9501 weakly similar to UP|Q9MBB6 (Q9MBB6) Pectin methylesterase ,
partial (29%)
Length = 934
Score = 258 bits (660), Expect = 1e-69
Identities = 133/255 (52%), Positives = 160/255 (62%), Gaps = 5/255 (1%)
Frame = +2
Query: 339 TIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPAKHQAVALRVGADLSAFYN 398
TIITG +N DG T +AT A F+A+ ITF+NTAGP HQAVALR D SAF
Sbjct: 14 TIITGRKNFADGVKTMQTATFANQAPGFIAKAITFENTAGPNGHQAVALRNQGDQSAFVG 193
Query: 399 CDIIAYQDTLYVHNNRQFFVNCFISGTVDFIFGNSAVVFQNCDIHARRPNSGQKNMVTAQ 458
C I+ YQDTLYV NRQF+ NC ISGT+DFIFG S + Q+ I R+PN Q N VTA
Sbjct: 194 CHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGTSPTLIQHSIIVVRKPNDNQFNTVTAD 373
Query: 459 GRVDPNQNTGIVIQKCRIGATKDLEGVKGNFPTYLGRPWKEYSRTVFMQSSISDVIDPVG 518
G N TGIVIQ C I L V+ +YLGRPWKEYSRTV M+S++ D I P G
Sbjct: 374 GTPTKNMPTGIVIQDCEIVPEAALFPVRFKIKSYLGRPWKEYSRTVVMESTLGDFIHPEG 553
Query: 519 WHEWNGNFALNTLVYREYQNTGPGAGTSKRVTWKGFKVITSAAEAQSFTPGNFI-----G 573
W W G+FAL+TL Y E+ NTGPGA T+ R+ WKG++ + S AEA FT G F+
Sbjct: 554 WFPWAGSFALDTLYYAEHANTGPGANTAGRIKWKGYRGVISRAEATQFTAGEFLKAGPRS 733
Query: 574 GSSWLGSTGFPFSLG 588
G W+ + P LG
Sbjct: 734 GLDWIKALHVPHYLG 778
>TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%)
Length = 848
Score = 251 bits (642), Expect = 2e-67
Identities = 128/232 (55%), Positives = 166/232 (71%), Gaps = 4/232 (1%)
Frame = +1
Query: 271 QGSTVKADVVVAA-DGSGNFKTVSEAVAAAPLKSSKR---YVIKIKAGVYKENVEVPKKK 326
QG + V+V+ +G+ N+ ++ +A+AAAP + + ++I ++ G Y+E V VPK+K
Sbjct: 130 QGVLLNDFVIVSPYNGTDNYTSIGDAIAAAPNHTKPQDGYFLIYVREGYYEEYVIVPKEK 309
Query: 327 TNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPAKHQAVA 386
NI+ +GDG TIITG+ +V+DG TTF+S+T A+ G F A D+TF+NTAGPAKHQAVA
Sbjct: 310 KNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFTAVDVTFRNTAGPAKHQAVA 489
Query: 387 LRVGADLSAFYNCDIIAYQDTLYVHNNRQFFVNCFISGTVDFIFGNSAVVFQNCDIHARR 446
+R ADLS FY C YQDTLYVH+ RQF+ C I GTVDFIFGN+AVVFQNC+I+AR+
Sbjct: 490 VRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARK 669
Query: 447 PNSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKGNFPTYLGRPWK 498
P QKN VTAQGR DPNQNTGI IQ C I A DL + +YLGRPW+
Sbjct: 670 PLPFQKNAVTAQGRTDPNQNTGISIQNCTIDAAPDLAAELNSTLSYLGRPWE 825
>TC10949 similar to UP|PME3_PHAVU (Q43111) Pectinesterase 3 precursor
(Pectin methylesterase 3) (PE 3) , partial (34%)
Length = 773
Score = 210 bits (534), Expect = 6e-55
Identities = 104/207 (50%), Positives = 131/207 (63%), Gaps = 1/207 (0%)
Frame = +3
Query: 380 AKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFFVNCFISGTVDFIFGNSAVVFQN 439
AKHQAVA+R G+D S FY C +QDTLY H+NRQF+ C I+GT+DFIFGN+A +FQN
Sbjct: 3 AKHQAVAMRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAASIFQN 182
Query: 440 CDIHARRPNSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKGNFPTYLGRPWKE 499
C I R+P Q +TAQG+ DPNQNTGIVIQK I + PTYLGRPWK+
Sbjct: 183 CKIMPRQPMPNQFYTITAQGKKDPNQNTGIVIQKSTITPLESTY----TAPTYLGRPWKD 350
Query: 500 YSRTVFMQSSISDVIDPVGWHEWNGNF-ALNTLVYREYQNTGPGAGTSKRVTWKGFKVIT 558
+S T+ MQS I + PVGW W N T+ Y E+QN+GPG+ ++RV W G+K
Sbjct: 351 FSTTLIMQSEIGSFLKPVGWVSWVANVDPPATIFYAEHQNSGPGSDVAQRVKWTGYKSTL 530
Query: 559 SAAEAQSFTPGNFIGGSSWLGSTGFPF 585
+A + FT +FI G WL T F
Sbjct: 531 TADDLGKFTLASFIQGPEWLPDTAVAF 611
>AV426815
Length = 391
Score = 201 bits (512), Expect = 2e-52
Identities = 107/130 (82%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
Frame = +3
Query: 238 NMVLGSNK-NRKLLEEENGVGWPEWISAGDRRLLQGSTVKADVVVAADGSGNFKTVSEAV 296
N V G +RKL+E G WPEWISA DRRLLQ TVKADVVVAADGSGNFKTVS AV
Sbjct: 6 NSVAGEKTGSRKLMEA--GEVWPEWISAADRRLLQAGTVKADVVVAADGSGNFKTVSAAV 179
Query: 297 AAAPLKSSKRYVIKIKAGVYKENVEVPKKKTNIMFLGDGRTNTIITGSRNVVDGSTTFHS 356
AAAP KS RYVIKIKAGVY+ENVEVPKKKTNIMFLGDGRT TIITGSRNVVDGSTTFHS
Sbjct: 180 AAAPEKSKTRYVIKIKAGVYRENVEVPKKKTNIMFLGDGRTTTIITGSRNVVDGSTTFHS 359
Query: 357 ATVAIVGGNF 366
ATVA+VGGNF
Sbjct: 360 ATVAVVGGNF 389
>TC14929 similar to UP|CAE76633 (CAE76633) Pectin methylesterase (Fragment)
, partial (24%)
Length = 693
Score = 200 bits (509), Expect = 5e-52
Identities = 93/107 (86%), Positives = 99/107 (91%)
Frame = +2
Query: 483 EGVKGNFPTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNGNFALNTLVYREYQNTGPG 542
E VK +FPTYLGRPWKEYSRTVFMQSSISDVIDP GWHEW+GNFALNTLVYREYQ GPG
Sbjct: 2 EPVKYSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQYPGPG 181
Query: 543 AGTSKRVTWKGFKVITSAAEAQSFTPGNFIGGSSWLGSTGFPFSLGL 589
AGTSKRV WKG KVITSA+EAQ+FTPG+FI GS+WLGSTGFPFSLGL
Sbjct: 182 AGTSKRVAWKGVKVITSASEAQAFTPGSFIAGSNWLGSTGFPFSLGL 322
>TC8690 similar to UP|Q8RVX1 (Q8RVX1) Pectin methylesterase precursor
(Pectinesterase) , partial (59%)
Length = 1082
Score = 170 bits (431), Expect = 5e-43
Identities = 127/358 (35%), Positives = 180/358 (49%), Gaps = 9/358 (2%)
Frame = +3
Query: 23 SLFTTLLIVASIVAIVATTTKNSNKSKNNSIASSSLSLSHH-SHAILKSACTTTLYPELC 81
S T + S+VAI++++ ++ K S + LS H HA+ S+C +
Sbjct: 123 SFSKTFWLFLSLVAIISSSALIASYLKPTSF-NLFLSPPHGCEHALDASSCLAHV----- 284
Query: 82 FSAISSEPNITHKITNHKDVISLSLNITTRAVEHNYFTVEKLLLRKSLTKREKIALHDCL 141
S +S P K +ISL T+ E T K + + RE+ AL DC
Sbjct: 285 -SEVSQSPISATKDPKLNILISLMTKSTSHIQEAMVKT--KAIKNRINNPREEAALSDCE 455
Query: 142 ETIDETLDELKEAQNDLVLYPSKKTLYQHADDLKTLISSAITNQVTCLDGFSHDDADKEV 201
+ +D ++D + D V+ +K H D +S +TN TCLDG
Sbjct: 456 QLMDLSIDRVW----DSVMALTKDNTDSH-QDAHAWLSGVLTNHATCLDGLEGPS----- 605
Query: 202 RKVLQEGQIHVEHMCSNALAMTKNMTDKDIAEFEQTNMVL------GSNKNRKLLEEENG 255
+ L E +I +D+ +T++ L N ++++E
Sbjct: 606 -RALMEAEI------------------EDLISRSKTSLALLVSVLAPKGGNEQIIDEPLD 728
Query: 256 VGWPEWISAGDRRLLQGST--VKADVVVAADGSGNFKTVSEAVAAAPLKSSKRYVIKIKA 313
+P W++ DRRLL+ S V A+VVVA DGSG FKTV+EAVA+AP RYVI +K
Sbjct: 729 GDFPSWVTRKDRRLLESSVGDVNANVVVAKDGSGRFKTVAEAVASAPDSGKTRYVIYVKK 908
Query: 314 GVYKENVEVPKKKTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDI 371
G YKEN+E+ KKKTN+M GDG TIITG+ NV+DGSTTF SATVA VG F+A+DI
Sbjct: 909 GTYKENIEIGKKKTNVMLTGDGMDATIITGNLNVIDGSTTFKSATVAAVGDGFIAQDI 1082
>TC18838 weakly similar to PIR|PC4168|PC4168 pectinesterase 2 precursor -
Arabidopsis thaliana (fragment)
{Arabidopsis thaliana;} , partial (9%)
Length = 488
Score = 90.9 bits (224), Expect(2) = 1e-35
Identities = 45/61 (73%), Positives = 53/61 (86%), Gaps = 1/61 (1%)
Frame = +3
Query: 78 PELCFSAISSEPNITHKITNHKDVISLSLNITTRAVEHNYFTVEKLLL-RKSLTKREKIA 136
PELCFSA++SEP +THK+T+HKDVISL LNIT RAVE N+F+VEKLL RK LT+REK A
Sbjct: 306 PELCFSAVASEPGVTHKVTSHKDVISLVLNITFRAVEQNFFSVEKLLARRKGLTEREKTA 485
Query: 137 L 137
L
Sbjct: 486 L 488
Score = 76.3 bits (186), Expect(2) = 1e-35
Identities = 41/83 (49%), Positives = 60/83 (71%), Gaps = 8/83 (9%)
Frame = +2
Query: 1 MNKIKQSLAGISNSGN-------KKKLLISLFTTLLIVASIVAIVA-TTTKNSNKSKNNS 52
M+K++Q+ AGIS+SGN K KL+++LF+ LL+ AS AIVA + N + ++S
Sbjct: 50 MSKLRQAYAGISDSGNHISLSKSKNKLILALFSALLLAASGAAIVAGVNSHKKNTTSSSS 229
Query: 53 IASSSLSLSHHSHAILKSACTTT 75
I +SSL+LSHHSH I+KSAC++T
Sbjct: 230 ITASSLTLSHHSHTIIKSACSST 298
>AV765593
Length = 501
Score = 137 bits (346), Expect = 4e-33
Identities = 64/122 (52%), Positives = 83/122 (67%)
Frame = -1
Query: 465 QNTGIVIQKCRIGATKDLEGVKGNFPTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNG 524
Q+TG I C I A DL G TYLGRPWKEYSRTV+MQ+S+ +VID GW W+G
Sbjct: 501 QDTGTSIHNCTIRAADDLASSNGATATYLGRPWKEYSRTVYMQTSMDNVIDSAGWRAWDG 322
Query: 525 NFALNTLVYREYQNTGPGAGTSKRVTWKGFKVITSAAEAQSFTPGNFIGGSSWLGSTGFP 584
FAL+TL Y E+ N+GPG+ T+ RVTW+G+ VI +A +A +FT NF+ G WL TG
Sbjct: 321 EFALSTLYYAEFNNSGPGSNTNGRVTWQGYHVI-NATDAANFTVSNFLLGDDWLPQTGVS 145
Query: 585 FS 586
++
Sbjct: 144 YT 139
>AI967495
Length = 390
Score = 135 bits (341), Expect = 1e-32
Identities = 66/124 (53%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Frame = +1
Query: 410 VHNNRQFFVNCFISGTVDFIFGNSAVVFQNCDIHARRPNSGQKNMVTAQGRVDPNQNTGI 469
VH RQF+ C I GTVD IFGN+AVVFQNC I A++P GQ NM+TAQGR DP QNTGI
Sbjct: 16 VHAQRQFYKQCQIYGTVDLIFGNAAVVFQNCKIFAKKPLDGQANMITAQGRDDPFQNTGI 195
Query: 470 VIQKCRIGATKDLEGVKGNFPTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNG-NFAL 528
I I A DL+ V T LGRPW++YSR V +++ + ++ P+GW W+ +FAL
Sbjct: 196 TIHNSEIRAAPDLKPVVNKHNTSLGRPWQQYSRVVVLKTFMDTLVSPLGWSSWDDTDFAL 375
Query: 529 NTLV 532
+T V
Sbjct: 376 DTFV 387
>TC16044 similar to UP|CAE76634 (CAE76634) Pectin methylesterase (Fragment)
, partial (43%)
Length = 564
Score = 126 bits (316), Expect = 1e-29
Identities = 61/108 (56%), Positives = 71/108 (65%)
Frame = +3
Query: 482 LEGVKGNFPTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNGNFALNTLVYREYQNTGP 541
L+ +F TYLGRPWK YSRTV+M S I D + GW EWN FAL+TL Y EY N GP
Sbjct: 3 LKASNDSFETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGP 182
Query: 542 GAGTSKRVTWKGFKVITSAAEAQSFTPGNFIGGSSWLGSTGFPFSLGL 589
GA +RV W G++VITSA EA FT FI G++WL STG F GL
Sbjct: 183 GAAVGQRVNWPGYRVITSALEASRFTVAQFILGATWLPSTGVAFLSGL 326
>AU089161
Length = 400
Score = 65.5 bits (158), Expect(3) = 2e-28
Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +1
Query: 326 KTNIMF--LGDGRTNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPAKHQ 383
+ N++F G G T+ITG++N VDG T SAT V +F+A+ + F+NTAG +KHQ
Sbjct: 58 RKNLIF*CTGXGPKKTVITGNKNFVDGYKTMRSATFTTVAPDFMAKSMGFENTAGASKHQ 237
Query: 384 AVALRV 389
AVALRV
Sbjct: 238 AVALRV 255
Score = 64.3 bits (155), Expect(3) = 2e-28
Identities = 29/45 (64%), Positives = 35/45 (77%)
Frame = +2
Query: 392 DLSAFYNCDIIAYQDTLYVHNNRQFFVNCFISGTVDFIFGNSAVV 436
D SAF++C I YQDTLY H +RQF+ NC ISGTVDFIFG S ++
Sbjct: 263 DRSAFFDCAISGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSTLL 397
Score = 33.5 bits (75), Expect(3) = 2e-28
Identities = 14/26 (53%), Positives = 19/26 (72%)
Frame = +3
Query: 308 VIKIKAGVYKENVEVPKKKTNIMFLG 333
VI +KAGVY E +++ KKK NI+ G
Sbjct: 9 VIYVKAGVYDEYIQIDKKKPNILMYG 86
>TC20170 similar to UP|Q9M5J0 (Q9M5J0) Pectin methylesterase isoform alpha
(Fragment) , partial (32%)
Length = 592
Score = 119 bits (298), Expect = 1e-27
Identities = 55/92 (59%), Positives = 64/92 (68%)
Frame = +1
Query: 498 KEYSRTVFMQSSISDVIDPVGWHEWNGNFALNTLVYREYQNTGPGAGTSKRVTWKGFKVI 557
K YSRTVF++S + D+IDP GW EWN FAL+TL Y EYQN GPG+ S RV W G++VI
Sbjct: 1 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNPSARVKWGGYRVI 180
Query: 558 TSAAEAQSFTPGNFIGGSSWLGSTGFPFSLGL 589
S+ EA FT G FI GS WL STG PF L
Sbjct: 181 NSSTEASQFTVGQFIQGSDWLNSTGIPFYFNL 276
>CN825195
Length = 551
Score = 117 bits (294), Expect = 4e-27
Identities = 71/190 (37%), Positives = 114/190 (59%), Gaps = 4/190 (2%)
Frame = +2
Query: 182 ITNQVTCLDGFSHDDADKEVRKVLQEGQIHVEHMCSNALAMTKNMTDKDIAEFEQTNMVL 241
+TNQ TC DGF+ D +V+ + + + SN LA+ D +F +
Sbjct: 17 LTNQDTCADGFA--DTSGDVKDQMAVNLKDLSELVSNCLAIFAGAGD----DFSGVPI-- 172
Query: 242 GSNKNRKLLEEENGVGWPEWISAGDRRLLQ--GSTVKADVVVAADGSGNFKTVSEAVAAA 299
+NR+LL + +P W++ DRRLL S ++ADVVV+ DG+G KT++EA+
Sbjct: 173 ---QNRRLLAMRDD-NFPRWLNRRDRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKV 340
Query: 300 PLKSSKRYVIKIKAGVYKE-NVEVPKKKTNIMFLGDGRTNTIITGSRNVVDG-STTFHSA 357
P S+R++I ++AG Y+E N+++ +K+TN+M +GDG+ T+ITG +NV+ G TTFH+A
Sbjct: 341 PEYGSRRFIIYVRAGRYEENNLKIGRKRTNVMIIGDGKGKTVITGGKNVMYGLLTTFHTA 520
Query: 358 TVAIVGGNFL 367
+ A G F+
Sbjct: 521 SFAASGAGFI 550
>TC9624 similar to UP|Q43234 (Q43234) Pectinmethylesterase precursor
(Pectinesterase) (Pectin methylesterase) (Fragment) ,
partial (33%)
Length = 586
Score = 116 bits (291), Expect = 9e-27
Identities = 58/105 (55%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Frame = +3
Query: 487 GNFPTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNGNFA--LNTLVYREYQNTGPGAG 544
G+ TYLGRPWK+YSRT+ +QSSI IDP GW EW+ L TL Y EY N+G GAG
Sbjct: 6 GSIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSKDFLQTLYYGEYLNSGAGAG 185
Query: 545 TSKRVTWKGFKVITSAAEAQSFTPGNFIGGSSWLGSTGFPFSLGL 589
T KRV W GF VI +AAEA FT I G+ WL G F GL
Sbjct: 186 TGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL 320
>BP039243
Length = 462
Score = 106 bits (265), Expect = 9e-24
Identities = 58/98 (59%), Positives = 70/98 (71%)
Frame = -2
Query: 278 DVVVAADGSGNFKTVSEAVAAAPLKSSKRYVIKIKAGVYKENVEVPKKKTNIMFLGDGRT 337
D+VVA DG+GNF + EAVAAAP + R+VI IKAG Y ENVEV +KKTN+MF+GDG
Sbjct: 443 DLVVAKDGTGNFAPIGEAVAAAPNSRATRFVIHIKAGAYFENVEVIRKKTNVMFVGDGIG 264
Query: 338 NTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQN 375
T++ RNVVDG TTF SATV G L+R I+F N
Sbjct: 263 KTVVKAHRNVVDGWTTFPSATV----GALLSRLISFFN 162
>BP050971
Length = 477
Score = 101 bits (252), Expect = 3e-22
Identities = 49/110 (44%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Frame = -1
Query: 481 DLEGVKGNFPTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNGNFAL-NTLVYREYQNT 539
D + G+ PT+LGRPWK +SRTVFM+S +S++I P GW EW + L + EY N
Sbjct: 471 DFQPSNGSIPTFLGRPWKNFSRTVFMESFMSEMIHPEGWLEWETYTTYDDPLFFGEYPNK 292
Query: 540 GPGAGTSKRVTWKGFKVITSAAEAQSFTPGNFIGGSSWLGSTGFPFSLGL 589
GPG+G + RV W+G+ V+ + + A FT FI G WL S G + GL
Sbjct: 291 GPGSGVANRVKWRGYHVLNN-SPAMDFTVNPFIKGDLWLPSPGVSYHAGL 145
>BF177669
Length = 336
Score = 100 bits (248), Expect(2) = 5e-22
Identities = 53/100 (53%), Positives = 60/100 (60%)
Frame = +3
Query: 468 GIVIQKCRIGATKDLEGVKGNFPTYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNGNFA 527
GI IQ C I +L V+ TYLGRPWK YS TV MQS++ I P GW W GN A
Sbjct: 42 GISIQNCSISPFGNLSYVQ----TYLGRPWKNYSTTVVMQSTLGSFISPNGWLPWVGNSA 209
Query: 528 LNTLVYREYQNTGPGAGTSKRVTWKGFKVITSAAEAQSFT 567
+T+ Y EYQN G GA T RV WKG K ITS +A FT
Sbjct: 210 PDTIFYAEYQNVGQGASTKNRVKWKGLKTITS-KQASKFT 326
Score = 21.6 bits (44), Expect(2) = 5e-22
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 456 TAQGRVDPNQNTG 468
+A+ + DPN NTG
Sbjct: 5 SARAKTDPNMNTG 43
>TC11594 similar to UP|Q9FXW9 (Q9FXW9) Pectin methylesterase-like protein,
partial (18%)
Length = 532
Score = 98.2 bits (243), Expect = 3e-21
Identities = 50/112 (44%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Frame = +3
Query: 474 CRIGATKDLEGVKGNFP----TYLGRPWKEYSRTVFMQSSISDVIDPVGWHEWNGNFALN 529
C I T+D + + P YLGRPWKEYSRTVF+ S + ++ P GW WNG FAL
Sbjct: 3 CLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSLLEALVTPQGWMPWNGEFALK 182
Query: 530 TLVYREYQNTGPGAGTSKRVTWKGFKVITSAAEAQSFTPGNFIGGSSWLGST 581
TL Y E++N+GPG+ S RV+W KV A +++ NFI G W+ S+
Sbjct: 183 TLYYGEFENSGPGSDLSLRVSWSS-KV--PAEHVLTYSAENFIQGDDWIPSS 329
>BP033848
Length = 525
Score = 89.0 bits (219), Expect = 2e-18
Identities = 59/175 (33%), Positives = 98/175 (55%), Gaps = 10/175 (5%)
Frame = +2
Query: 165 KTLYQHADDLKTLISSAITNQVTCLDGFSHDDADKE-VRKVLQEGQI-HVEHMCSNALAM 222
+ +++ D + +S+ ++ Q +C++GF + +E V+ LQEG + + + AL +
Sbjct: 14 QAVHEQTPDFRNWLSAVMSYQQSCMEGFEDGKSGEEAVKGQLQEGSLDQMGKLTGIALDI 193
Query: 223 TKNMTDKDIAEFEQT-NMVLGSNK-NRKLLEEE--NGVGWPEWISAGDRRLL----QGST 274
D++ QT ++ L N +R+LLE E + G P W S DR+LL +G
Sbjct: 194 VS-----DLSRILQTFDLKLDLNPASRRLLEAEEVDHEGLPSWFSGADRKLLGKMKKGGK 358
Query: 275 VKADVVVAADGSGNFKTVSEAVAAAPLKSSKRYVIKIKAGVYKENVEVPKKKTNI 329
V + VVA DGSG FKT++ A+A+ P RY+I ++AGVY E + VPK+ N+
Sbjct: 359 VTPNAVVAKDGSGKFKTIASAIASYPKGFKGRYIIYVRAGVYDEYITVPKQAVNL 523
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,432,292
Number of Sequences: 28460
Number of extensions: 123411
Number of successful extensions: 823
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of query: 589
length of database: 4,897,600
effective HSP length: 95
effective length of query: 494
effective length of database: 2,193,900
effective search space: 1083786600
effective search space used: 1083786600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC137821.5