TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137821.2 + phase: 0 /pseudo
         (428 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP028481                                                               54  3e-11
TC16375 weakly similar to UP|Q9FEV9 (Q9FEV9) Microtubule-associa...    64  5e-11
TC18345 similar to UP|Q84VU1 (Q84VU1) 65 kDa microtubule associa...    40  6e-04
TC11521 similar to UP|O23144 (O23144) Proton pump interactor (AT...    32  0.15
BP048937                                                               31  0.34
TC8009 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycerat...    28  2.2
TC17913                                                                28  2.9
TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (...    27  4.9
AW720217                                                               27  8.4
TC19988 similar to UP|CRT3_ARATH (O04153) Calreticulin 3 precurs...    27  8.4

>BP028481 
          Length = 313

 Score = 53.5 bits (127), Expect(2) = 3e-11
 Identities = 32/70 (45%), Positives = 49/70 (69%), Gaps = 4/70 (5%)
 Frame = +1

Query: 186 ETLARLNESVLLLKQEKQQSLQKVQFLE----ELWDFMGITTDEQKAVCDDVIGLISASV 241
           +TLARL ++VL LK++K+Q L K+Q L     +LW+ M  T  E++++ D V   ISASV
Sbjct: 1   DTLARLAKTVLTLKEDKKQRLHKLQELASQLIDLWNLMD-TPPEERSLFDHVTCNISASV 177

Query: 242 DEVSIHGSLS 251
           DEV++ G+L+
Sbjct: 178 DEVTVPGALA 207



 Score = 30.8 bits (68), Expect(2) = 3e-11
 Identities = 14/27 (51%), Positives = 19/27 (69%)
 Frame = +2

Query: 258 VDVEVQRLQVLNPSKMKEFVFKRQKEL 284
           ++VEV+RL  L  S+MKE   K+Q EL
Sbjct: 233 LEVEVERLDQLKASRMKEIALKKQGEL 313


>TC16375 weakly similar to UP|Q9FEV9 (Q9FEV9) Microtubule-associated protein
           MAP65-1a, partial (16%)
          Length = 732

 Score = 63.9 bits (154), Expect = 5e-11
 Identities = 40/114 (35%), Positives = 64/114 (56%)
 Frame = +2

Query: 250 LSNDIVKQVDVEVQRLQVLNPSKMKEFVFKRQKELAFKRQNELEEIHRGAHMDMDAKAAR 309
           L+ D++ Q +VE++ L  L  S MK+        ++ K+Q +LEEI   AH+++D +   
Sbjct: 2   LAMDMI*QAEVEIESLGQLTTSMMKD--------ISVKKQGKLEEIFSRAHVEIDPE--- 148

Query: 310 QILTDLIGNIDMSELLQGMDKQIRKAKEQAQSRRDIIDRVAEWKSAAEEEKWLD 363
               D I  +  S +L  MD Q  KA+  A SR+DI+D+V +   A EEE W++
Sbjct: 149 ----DAIDRMGHSSILASMDSQKAKAEA*ALSRKDILDKVDK*MLAREEESWVE 298


>TC18345 similar to UP|Q84VU1 (Q84VU1) 65 kDa microtubule associated
           protein, partial (8%)
          Length = 521

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = +3

Query: 314 DLIGNIDMSELLQGMDKQIRKAKEQAQSRRDIIDRVAEWKSAAEEEKWLD 363
           D I  +  S +L  MD Q  KA+  A SR+DI+D+V +   A EEE W++
Sbjct: 24  DAIDRMGHSSILASMDSQKAKAEA*ALSRKDILDKVDK*MLAREEESWVE 173


>TC11521 similar to UP|O23144 (O23144) Proton pump interactor
           (AT4g27500/F27G19_100), partial (21%)
          Length = 1005

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 43/208 (20%), Positives = 78/208 (36%), Gaps = 6/208 (2%)
 Frame = +2

Query: 62  QLANIIPVVEDLRFKKKERVKEILEIKSQ-ISQIRAEKAGCGQSKGVTDQDVDQCDLTME 120
           QL   I  +   RF+  E +K     +++ ISQI++ +    Q + + D+ + + +   +
Sbjct: 470 QLDKEISKINQGRFQITEALKAKRSDRAELISQIKSLRDNSRQFQSMVDEKIKEIEPLQQ 649

Query: 121 KLGKLKSHLNELQNEKNIRHQKVKSHISTISELSAVMSIDISEILNGIHPSLNDSSNGAQ 180
            LGKL++  N  +                               L      LND     Q
Sbjct: 650 ALGKLRTATNAGRGG-----------------------------LCSSEEELNDVIYSFQ 742

Query: 181 QSISDETLARLNESVLL-----LKQEKQQSLQKVQFLEELWDFMGITTDEQKAVCDDVIG 235
             I  E+++   E  +L     L+  +++ +       +L D MG     QK    D + 
Sbjct: 743 YRIQHESISLAEEKQILRDIKQLEGTREKVVANAAMRAKLQDSMG-----QKDTIQDQVK 907

Query: 236 LISASVDEVSIHGSLSNDIVKQVDVEVQ 263
           LI   +D V          +KQ+D E++
Sbjct: 908 LIGGDLDGVKKERQAIRSKIKQIDEELK 991


>BP048937 
          Length = 561

 Score = 31.2 bits (69), Expect = 0.34
 Identities = 13/32 (40%), Positives = 24/32 (74%)
 Frame = -1

Query: 60  KQQLANIIPVVEDLRFKKKERVKEILEIKSQI 91
           ++QL   +PV+E L  +K+ER++E  +++SQI
Sbjct: 507 EEQLETKVPVLEQLWQQKEERIQEFSDVQSQI 412



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 16/44 (36%), Positives = 26/44 (58%)
 Frame = -2

Query: 259 DVEVQRLQVLNPSKMKEFVFKRQKELAFKRQNELEEIHRGAHMD 302
           +VEV+RL+    S+MKE         A ++Q EL+E+   AH++
Sbjct: 278 EVEVERLEQFKASRMKEI--------ASRKQGELKEMFACAHVE 171


>TC8009 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycerate kinase
           , complete
          Length = 1697

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 25/90 (27%), Positives = 40/90 (43%)
 Frame = -2

Query: 183 ISDETLARLNESVLLLKQEKQQSLQKVQFLEELWDFMGITTDEQKAVCDDVIGLISASVD 242
           +++   + LN S   L++ + + LQ V     LW         Q A  DD+    S  +D
Sbjct: 481 LTNRVASNLNLSSKKLRKPRHKWLQTVFRCYTLWP-------SQMAGKDDLSTKTSQVLD 323

Query: 243 EVSIHGSLSNDIVKQVDVEVQRLQVLNPSK 272
               H S ++ I+  V V +QR   +NP K
Sbjct: 322 --GRHSSTNSSIISDVKVIIQRNIQINPDK 239


>TC17913 
          Length = 572

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 20/61 (32%), Positives = 32/61 (51%), Gaps = 5/61 (8%)
 Frame = -3

Query: 120 EKLGKLKSHLNELQNEKNIRHQKVKSHIST-----ISELSAVMSIDISEILNGIHPSLND 174
           EK   L  H+ +L N+KN++H+  +  I T     I++LS   S +++     I P  ND
Sbjct: 447 EKPSSLVVHVIQLHNQKNVKHKLNQGIIHTRGEERINDLSDSTSTNLT-----IKPQEND 283

Query: 175 S 175
           S
Sbjct: 282 S 280


>TC10343 similar to UP|Q9SZZ1 (Q9SZZ1) Fibrillarin-like protein (Fibrillarin
           2) (AtFib2), partial (85%)
          Length = 1116

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +1

Query: 26  YLNKVLDDFQSEIANIASSLGEDY-VSFSRGKG----TLKQQLANIIPVVEDLRFKKKER 80
           YL        S +++I    G  Y V FS   G     + ++  N+IP++ED R   K R
Sbjct: 484 YLGAASGTNVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR 663

Query: 81  V 81
           +
Sbjct: 664 M 666


>AW720217 
          Length = 539

 Score = 26.6 bits (57), Expect = 8.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 172 LNDSSNGAQQSISDETLARLNESVLLLKQEKQQSLQKVQFLEELWDFMGITT 223
           L D S  +QQ++  + L R +E+             ++Q+L E+  F+GITT
Sbjct: 341 LGDKSPFSQQNLQGDALDRDDET------------PRIQYLAEIAKFLGITT 460


>TC19988 similar to UP|CRT3_ARATH (O04153) Calreticulin 3 precursor, partial
           (26%)
          Length = 642

 Score = 26.6 bits (57), Expect = 8.4
 Identities = 11/40 (27%), Positives = 26/40 (64%)
 Frame = +2

Query: 304 DAKAARQILTDLIGNIDMSELLQGMDKQIRKAKEQAQSRR 343
           D   AR+++ ++  N ++ +     +++IRKAKE+ +++R
Sbjct: 173 DPDYAREVVDEVFANREIEKEAFEEEEKIRKAKEEEEAQR 292


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.135    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,173,783
Number of Sequences: 28460
Number of extensions: 52739
Number of successful extensions: 258
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of query: 428
length of database: 4,897,600
effective HSP length: 93
effective length of query: 335
effective length of database: 2,250,820
effective search space: 754024700
effective search space used: 754024700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)