TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137702.3 - phase: 2 /pseudo
         (899 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16645                                                               121  2e-32
BP085968                                                               74  3e-23
BP056380                                                               32  0.34
BP049839                                                               30  1.3
TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPas...    30  1.7
CB829368                                                               30  2.2
TC8120 weakly similar to UP|Q9ZVV1 (Q9ZVV1) T5A14.4 protein, par...    29  2.9
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat...    29  3.8
AI967540                                                               28  5.0
AI967505                                                               28  6.5

>TC16645 
          Length = 596

 Score =  121 bits (303), Expect(2) = 2e-32
 Identities = 56/117 (47%), Positives = 81/117 (68%)
 Frame = +1

Query: 517 ANQKYPEARDLTYGEFPLKFTWKASQRKWTPRQRGLSIGRIHFVAPGCGEKFYLRTLLNY 576
           AN+KY E R+LTY EFP +F +     KW P+Q+  S+GR+ F+APG GE +Y+R LL  
Sbjct: 13  ANKKYQEGRNLTYAEFPSEFLYHQHTTKWVPKQKRFSLGRLPFIAPGMGENYYMRVLLTM 192

Query: 577 VKGPLCYDDIYTVGGVKYNSFKEACFALGLLDDDKEFVDAINQASFWGTASYMRRLF 633
            KG   +  I TV GV Y +F +AC A+GLL+DD+E+VD I+ +S +G+ + +R+LF
Sbjct: 193 QKGCDSFKSIKTVKGVVYPTFHDACEAMGLLEDDREYVDGISISSEFGSGTQLRKLF 363



 Score = 36.2 bits (82), Expect(2) = 2e-32
 Identities = 13/40 (32%), Positives = 26/40 (64%)
 Frame = +2

Query: 633 FVQLLVTNQFAQPEVVWSKTWQNLSDDMLHRQRRASQLKN 672
           F ++L+TN  ++P+ VW K+W  L D +L+ +R+   + +
Sbjct: 362 FTRMLMTNLISRPQEVWRKSWSLLCDGILYDRRKTLNISD 481


>BP085968 
          Length = 341

 Score = 73.6 bits (179), Expect(2) = 3e-23
 Identities = 36/68 (52%), Positives = 51/68 (74%)
 Frame = +2

Query: 735 TAEQKNVYEKIISRVDDNLPGIFFLYGYGGTGKTFILRALSSAVRSRKEIVLTVASSGIA 794
           TA+Q  VY++I+S V  +  G +FLYG+GG+GKTF+    SS +RS+  +VL VASSGIA
Sbjct: 11  TAKQSKVYKQIMSSVWSDDGGFYFLYGFGGSGKTFVWNTWSSGLRSQGLMVLNVASSGIA 190

Query: 795 ALLIPGGR 802
           + L+PGG+
Sbjct: 191 SWLLPGGK 214



 Score = 52.8 bits (125), Expect(2) = 3e-23
 Identities = 26/43 (60%), Positives = 31/43 (71%)
 Frame = +3

Query: 802 RTAHSRFGIPIIVDEISTCGIHPKSPLAKLVCKAKLIIWDEAP 844
           RTAHSRF I I +++ISTC I   S  A+L+ KA  IIWDEAP
Sbjct: 213 RTAHSRFSIHISINDISTCNIKQGSQKAELLQKASSIIWDEAP 341


>BP056380 
          Length = 415

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 774 LSSAVRSRKEIVLTVASSGIAALLIPGGRTAHSRFGIPIIVDEISTCGIHPKSPLAK 830
           L   + SR   +++  +S   A L+PG   + + F IP I D +    +H + P+AK
Sbjct: 230 LEQVISSRCWSMMSETASRNVASLVPGRTESSASFTIPSIADSLFKDSLHRRLPMAK 400


>BP049839 
          Length = 367

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 400 LKYNAHINVEWCNQSRSIKYLFKYVNKGHDRVTATF 435
           +KY  HI V+WC  S S+ ++FK   +G+  +   F
Sbjct: 163 VKYKQHIKVKWCQTSPSV-HIFKAPARGNRAIMVKF 267


>TC10924 homologue to UP|Q8H9D4 (Q8H9D4) 26S proteasome AAA-ATPase subunit
           RPT4a, partial (49%)
          Length = 648

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 21/78 (26%), Positives = 35/78 (43%), Gaps = 1/78 (1%)
 Frame = +2

Query: 702 SLIHESRNRLIYDELN-YNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLY 760
           +++HE    + Y  +   + Q+ E+     +  M  E       +  RV    P    LY
Sbjct: 422 NMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE-------LFLRVGIKPPKGVLLY 580

Query: 761 GYGGTGKTFILRALSSAV 778
           G  GTGKT + RA++S +
Sbjct: 581 GPPGTGKTLLARAIASNI 634


>CB829368 
          Length = 541

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 21/76 (27%), Positives = 35/76 (45%), Gaps = 3/76 (3%)
 Frame = +2

Query: 319 LYEIVASLMIHGPCGPQNKSSPCILIKKCTKYFPKKFV--DNTVIDSDGYPVYRRRDNGV 376
           LY + + L +H P    + SS    I KC  Y        D T +  D  P +R   N +
Sbjct: 44  LYFLSSLLSLHTPSSSYSSSSSSTSISKCNLYRGNWVFDPDRTPLYDDTCPFHRNAWNCI 223

Query: 377 FIKKKGESFVDN-RWV 391
             +++  SF+++ +WV
Sbjct: 224 RNQRQNLSFINSWKWV 271


>TC8120 weakly similar to UP|Q9ZVV1 (Q9ZVV1) T5A14.4 protein, partial (61%)
          Length = 1398

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 184 SIQRACRSGA*R*DKSSHCWEASCFAIKICWRGTLHDSELSR 225
           S+QR   SGA R   S H W  + F  K    G L  S L+R
Sbjct: 315 SVQRK*ISGASRFGTSIHWWRVAIFGFKCIRAGRLSSSRLAR 440


>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
           6B homolog, partial (65%)
          Length = 901

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 30/143 (20%), Positives = 58/143 (39%), Gaps = 7/143 (4%)
 Frame = +3

Query: 682 LRSHGKSMKEDYPTMPRTDISLIHESRNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKNV 741
           L  H  ++ +  P    + ISL+ +S       ++ YN  +   + +K       E    
Sbjct: 399 LHRHSNALVDVLPPEADSSISLLSQSEK----PDVTYND-IGGCDIQKQEIREAVELPLT 563

Query: 742 YEKIISRVDDNLPGIFFLYGYGGTGKTFILRALSSAVRSRKEIVLTVASSGIAALLIPGG 801
           + ++  ++  + P    LYG  GTGKT + +A+++   +    +  V S  +   L  G 
Sbjct: 564 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN--HTTAAFIRVVGSEFVQKYLGEGP 737

Query: 802 RTAHSRFGIP-------IIVDEI 817
           R     F +        I +DE+
Sbjct: 738 RMVRDVFRLAKENAPAIIFIDEV 806


>AI967540 
          Length = 431

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 9/17 (52%), Positives = 11/17 (63%)
 Frame = +2

Query: 331 PCGPQNKSSPCILIKKC 347
           PC P+  S PCIL+  C
Sbjct: 68  PCSPRGDSRPCILVNSC 118


>AI967505 
          Length = 362

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/78 (20%), Positives = 33/78 (41%)
 Frame = +1

Query: 396 RKLMLKYNAHINVEWCNQSRSIKYLFKYVNKGHDRVTATFYQGGDACYDEIKMYYDCRYL 455
           +KL  K   +  + +  + R+   +     + H R T   + GG  CY      +   + 
Sbjct: 85  KKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*GGSTCYSRF*AVFVLGFS 264

Query: 456 SACEAVWRIFSFDINYRE 473
               A+W+  +FD+ +R+
Sbjct: 265 RMLRAMWKGCNFDLEFRD 318


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.335    0.146    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,824,226
Number of Sequences: 28460
Number of extensions: 246116
Number of successful extensions: 1700
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of query: 899
length of database: 4,897,600
effective HSP length: 98
effective length of query: 801
effective length of database: 2,108,520
effective search space: 1688924520
effective search space used: 1688924520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (27.3 bits)