BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137670.5 + phase: 0
(409 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CN825243 159 1e-39
TC17718 similar to UP|O82171 (O82171) At2g35210 protein (Zinc fi... 137 2e-33
TC10059 weakly similar to UP|O82171 (O82171) At2g35210 protein (... 132 1e-31
TC13107 similar to GB|AAM65362.1|21655301|AY103310 At2g37550/F13... 109 9e-25
AV408991 92 2e-19
AV428070 91 3e-19
TC10060 similar to UP|Q923L6 (Q923L6) Eosinophil-associated ribo... 62 2e-10
TC16744 similar to GB|AAP37738.1|30725432|BT008379 At4g13350 {Ar... 53 1e-07
BP043685 36 0.013
TC15890 similar to UP|Q9FFL2 (Q9FFL2) Nucleolar protein-like, pa... 31 0.33
TC18463 similar to AAR92278 (AAR92278) At4g22580, partial (34%) 30 0.56
TC8440 similar to UP|Q9SKU1 (Q9SKU1) At2g20760 protein (At2g2076... 30 0.56
TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28... 30 0.96
BP066856 30 0.96
TC12466 similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, partial (18%) 29 1.2
TC16167 similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-reductas... 29 1.6
BP043764 29 1.6
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 28 2.8
TC11314 28 3.6
>CN825243
Length = 315
Score = 159 bits (401), Expect = 1e-39
Identities = 81/107 (75%), Positives = 91/107 (84%)
Frame = +1
Query: 64 STNLDSWTPEQLKMMSFGGNSRAQVFFRQHGWNGDGKVEAKYTSRAAELYKQLLSKEVAK 123
+TNLDSW+PEQLK MSFGGN RAQVFF+QHGW GK+EAKYTSRAAELY+Q+LSKEVAK
Sbjct: 1 ATNLDSWSPEQLKTMSFGGNGRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAK 180
Query: 124 SMSEEAALSAPPAASSQSAQGTNGLPDVKTNEVPIEKTVEKTVEKPE 170
SM+EEA+L + P A SQSAQG NGL DVKTNE P E T+EK EKPE
Sbjct: 181 SMAEEASLLSSPVA-SQSAQGVNGLADVKTNESPKENTLEKP-EKPE 315
>TC17718 similar to UP|O82171 (O82171) At2g35210 protein (Zinc finger
protein Glo3-like), partial (18%)
Length = 631
Score = 137 bits (346), Expect = 2e-33
Identities = 72/87 (82%), Positives = 82/87 (93%), Gaps = 1/87 (1%)
Frame = +2
Query: 324 FGDQNKANADAQATLSKFSGSSAISSADLFGDSSDN-VDLAASDLINRISFQAQQDISSL 382
FGDQ+KA+ +A+ATLSKFSGS+AISSADLFGDS DN +DL+ASDLINR+SFQAQQDISSL
Sbjct: 2 FGDQSKADVEAKATLSKFSGSNAISSADLFGDSGDNSIDLSASDLINRLSFQAQQDISSL 181
Query: 383 KNIAGETGKKLTSLASSLMTDLQDRIL 409
KNIAGETGKKL+SLAS+LMTD DRIL
Sbjct: 182 KNIAGETGKKLSSLASTLMTDFGDRIL 262
>TC10059 weakly similar to UP|O82171 (O82171) At2g35210 protein (Zinc finger
protein Glo3-like), partial (19%)
Length = 442
Score = 132 bits (331), Expect = 1e-31
Identities = 71/94 (75%), Positives = 84/94 (88%), Gaps = 2/94 (2%)
Frame = +2
Query: 318 ISSSQFFGDQNKANADAQATLSKFSGSSAISSADLFG-DSSDN-VDLAASDLINRISFQA 375
ISSSQFFGD A+ +A+ATLSKFSGS+AISSADLFG DS D+ +DLAA+ L+NR+SFQ
Sbjct: 2 ISSSQFFGDNKAADVEARATLSKFSGSNAISSADLFGGDSGDSSIDLAANVLLNRLSFQV 181
Query: 376 QQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL 409
Q+D+SSLKNIAGETGKKLTSLAS+LM+D QDRIL
Sbjct: 182 QEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL 283
>TC13107 similar to GB|AAM65362.1|21655301|AY103310 At2g37550/F13M22.5
{Arabidopsis thaliana;}, partial (29%)
Length = 465
Score = 109 bits (272), Expect = 9e-25
Identities = 48/101 (47%), Positives = 65/101 (63%)
Frame = +2
Query: 14 RKLKTKSENKSCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPE 73
R+L++ NK C DC KNP WASV+YGIF+C++CS HR LGVHISFVRS +D+W+
Sbjct: 62 RELQSMPGNKICVDCTQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEI 241
Query: 74 QLKMMSFGGNSRAQVFFRQHGWNGDGKVEAKYTSRAAELYK 114
Q+K M GGN F ++ + + KY + AA LY+
Sbjct: 242 QIKKMEAGGNDSLNAFLARYSIPKETDIVTKYNTNAATLYR 364
>AV408991
Length = 435
Score = 92.0 bits (227), Expect = 2e-19
Identities = 39/70 (55%), Positives = 49/70 (69%)
Frame = +1
Query: 21 ENKSCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSF 80
EN+ C DC AK P WASV GIF+C+ CS +HRSLGVHIS VRS LD+W PEQ+ +
Sbjct: 175 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 354
Query: 81 GGNSRAQVFF 90
GN +A ++
Sbjct: 355 MGNEKANSYW 384
>AV428070
Length = 356
Score = 91.3 bits (225), Expect = 3e-19
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = +1
Query: 14 RKLKTKSENKSCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPE 73
R L+++ NK C DC+ KNP WASV+YG+F+C++CS HR LGVHISFVRS +DSW+
Sbjct: 166 RDLQSEPSNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEL 345
Query: 74 QLK 76
Q+K
Sbjct: 346 QIK 354
>TC10060 similar to UP|Q923L6 (Q923L6) Eosinophil-associated ribonuclease
10, partial (8%)
Length = 550
Score = 62.0 bits (149), Expect = 2e-10
Identities = 30/36 (83%), Positives = 34/36 (94%)
Frame = +1
Query: 374 QAQQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL 409
Q Q+D+SSLKNIAGETGKKLTSLAS+LM+D QDRIL
Sbjct: 259 QVQEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL 366
>TC16744 similar to GB|AAP37738.1|30725432|BT008379 At4g13350 {Arabidopsis
thaliana;}, partial (18%)
Length = 687
Score = 52.8 bits (125), Expect = 1e-07
Identities = 28/94 (29%), Positives = 50/94 (52%), Gaps = 2/94 (2%)
Frame = +2
Query: 1 MASDSFTDKNA-VFRKLKTKSENKSCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHI 59
MAS +KN V R L N+ C +CN+ P + + F+C +CS +HR
Sbjct: 350 MASRKEDEKNERVIRGLLKLESNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREF---T 520
Query: 60 SFVRSTNLDSWTPEQLKMMSFGGNSRA-QVFFRQ 92
V+S ++ +T +++ + GGN RA +++F++
Sbjct: 521 HRVKSISMAKFTSQEVIALQEGGNQRAKEIYFKE 622
>BP043685
Length = 433
Score = 35.8 bits (81), Expect = 0.013
Identities = 16/54 (29%), Positives = 25/54 (45%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 MASDSFTDKNA-VFRKLKTKSENKSCFDCNAKNPTWASVTYGIFLCIDCSAVHR 53
M S +KN + R L N+ C +C+ P + + F+C CS +HR
Sbjct: 259 MGSRKEEEKNEKIIRGLMKLPPNRRCINCDNLGPQYVCTNFWTFICTTCSGIHR 420
>TC15890 similar to UP|Q9FFL2 (Q9FFL2) Nucleolar protein-like, partial (9%)
Length = 1066
Score = 31.2 bits (69), Expect = 0.33
Identities = 42/163 (25%), Positives = 64/163 (38%)
Frame = +2
Query: 153 TNEVPIEKTVEKTVEKPEKTESSSSPRAYTAVSNNLKKPIGAKKTGKSGGLGARKLTRKP 212
T+E+P + K T + S+ A LKKP GA G G A K P
Sbjct: 23 TSELPRDSLTVSEQNKDANTGALSTLEGNGATVQVLKKPAGA--FGALLGNSASKRKHDP 196
Query: 213 SESLYEQKPEELPAPVSSSTITKNNLPSGPPLTSRFEYTEDVQSSELNSGGSNVTGHVSV 272
+ + E K E++ + VS LP L S + V++ L S S++ S
Sbjct: 197 DKGMEEIKLEQIRSSVS--------LPFHSFLGSSEKSKPIVEAPSLASEMSDLHKPASD 352
Query: 273 PKSSSSFFSDFGMDSGFQKKSGPSSSKVQIQESDEARKKFSNA 315
P S+S+ +DS + S+ E+ E R S +
Sbjct: 353 PVSTSTLDEIILLDSDIAAEDLEQSNLEDPIENRENRSTVSTS 481
>TC18463 similar to AAR92278 (AAR92278) At4g22580, partial (34%)
Length = 555
Score = 30.4 bits (67), Expect = 0.56
Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 2/148 (1%)
Frame = +3
Query: 140 QSAQGTNGLPDVKTNEVPIE-KTVEKTVEKPEKTESSSSPRAYTAVSNNLKKPIGAKKTG 198
QS N P + TN I T ++ S ++P +++ + L P A
Sbjct: 51 QSHAHNNNKPRIFTNTARIAGSTFATSLHVSTSISSPTAPNTHSSKISALTSPTMAS--- 221
Query: 199 KSGGLGARKLTRKPSESLYEQKPEELPAPVSSSTITKNNLPSGPPLTSR-FEYTEDVQSS 257
ARK T P+ P SSST+ +++P+ PP+ R T +
Sbjct: 222 ------ARKPTTAPTVGTAPTHP----CSNSSSTVACSSIPASPPIQRRQTPSTSLTTPA 371
Query: 258 ELNSGGSNVTGHVSVPKSSSSFFSDFGM 285
+ SG S P ++S+ F M
Sbjct: 372 SILSGISTARSITPAPTTASTSSVSFAM 455
>TC8440 similar to UP|Q9SKU1 (Q9SKU1) At2g20760 protein
(At2g20760/F5H14.27), partial (19%)
Length = 649
Score = 30.4 bits (67), Expect = 0.56
Identities = 24/86 (27%), Positives = 42/86 (47%), Gaps = 3/86 (3%)
Frame = -1
Query: 308 ARKKFSNAKSISSSQFFGDQNKANADAQATLSKFSGSSAIS---SADLFGDSSDNVDLAA 364
A +K + + I+ + +QN A + + F GSSA+ +A L D++ D A
Sbjct: 391 AGEKRDSRRKINRKLKYDNQNYAAGCSSVAGTSFWGSSAVPLEVAASLGSDATSAADPVA 212
Query: 365 SDLINRISFQAQQDISSLKNIAGETG 390
D + SF + ++SL ++AG G
Sbjct: 211 LDAV---SFPSLVSLASLASLAGAGG 143
>TC15534 weakly similar to GB|AAO63420.1|28950993|BT005356 At5g28040
{Arabidopsis thaliana;}, partial (8%)
Length = 937
Score = 29.6 bits (65), Expect = 0.96
Identities = 59/296 (19%), Positives = 99/296 (32%), Gaps = 7/296 (2%)
Frame = -3
Query: 103 AKYTSRAAELYKQLLSKEVAKSMSEEAALSAPPAASSQSAQGTNGLPDVKTNEVPIEKTV 162
A +S + E Q LS +V + +EE LS+ SS+ + D T P T
Sbjct: 842 ASSSSESEEEDDQPLS-QVKHAAAEEEELSSEEEGSSEEEE-----EDETTAPAPPAATT 681
Query: 163 EKTVEKPEKTESSSSPRAYTAVSNNLKKPIGAKKTGKSGGLGARKLTRKPSESLYEQKPE 222
T KP + E S + ++ + + + L KP + KP+
Sbjct: 680 SHT--KPPQPEPESDSATQSDSESDTDSDQAPSASAPTPNPKVKPLATKPMDQTQTHKPK 507
Query: 223 ELPAPVSSSTITKNNLPSGPPLTSRFEYTEDVQSSELNSGGSNVTGHVSVPKSSSSFFSD 282
P+P + + K S N+G S +V
Sbjct: 506 AQPSPAPAKSAAKR-----------------AAESNANAGDSKRAKKKAV---------- 408
Query: 283 FGMDSGFQKKSGPSSSKVQIQESDEARKKFSNAKSISSSQFFGDQNK-ANADAQATLSKF 341
S P+++ +E +E KK N ++ + D+++ A A
Sbjct: 407 ---------DSAPAAAAGSDEEMEEDGKKSGNDSKKQFTRLWSDEDEIAILKGLADFISK 255
Query: 342 SGSSAISSADLFGD------SSDNVDLAASDLINRISFQAQQDISSLKNIAGETGK 391
+G+ + D F D +D D + R+ + Q KN GET K
Sbjct: 254 TGNDPLKYPDAFYDFVIRSLQADATRTQVKDKVRRLKKKFQTLAGKGKN--GETPK 93
>BP066856
Length = 485
Score = 29.6 bits (65), Expect = 0.96
Identities = 21/80 (26%), Positives = 36/80 (44%)
Frame = +2
Query: 239 PSGPPLTSRFEYTEDVQSSELNSGGSNVTGHVSVPKSSSSFFSDFGMDSGFQKKSGPSSS 298
P+GPP TSR + +++G ++ T S +SSSS S G G + +G +
Sbjct: 62 PTGPPTTSR--SMSSASTGTISTGSASTT---SASRSSSSSDSSKGYSLGTNEGTGSNKI 226
Query: 299 KVQIQESDEARKKFSNAKSI 318
+ + E R + K +
Sbjct: 227 QRPLNEGSGMRAHCKSVKHL 286
>TC12466 similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, partial (18%)
Length = 886
Score = 29.3 bits (64), Expect = 1.2
Identities = 26/82 (31%), Positives = 39/82 (46%)
Frame = -1
Query: 3 SDSFTDKNAVFRKLKTKSENKSCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFV 62
S++ + +T SE+ S +A P ASV + I LC S+ SL S
Sbjct: 376 SETLVPPSTATSNAETLSESMST---SALTPAIASVAFNILLCFLSSSSFLSLLAPSSKS 206
Query: 63 RSTNLDSWTPEQLKMMSFGGNS 84
+S++L S+TP K SF +S
Sbjct: 205 KSSDL-SFTPSTGKCSSFSFSS 143
>TC16167 similar to UP|Q9FGH3 (Q9FGH3) Dihydroflavonol 4-reductase-like
(Cinnamoyl-CoA reductase-like protein), partial (44%)
Length = 535
Score = 28.9 bits (63), Expect = 1.6
Identities = 14/38 (36%), Positives = 18/38 (46%)
Frame = +3
Query: 209 TRKPSESLYEQKPEELPAPVSSSTITKNNLPSGPPLTS 246
T KP S+Y E A S +I+ PS PP T+
Sbjct: 201 TMKPRRSIYNLSKEHPLASACSRSISSTTTPSSPPSTA 314
>BP043764
Length = 479
Score = 28.9 bits (63), Expect = 1.6
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = +3
Query: 179 RAYTAVSNNLKKPIGAKKTGKSGGLGARKLTRKPSESLYEQKPEELPAPVSSSTITKNNL 238
R T VS++LK P + + + T PS KP+ PAP S+ KN
Sbjct: 87 RHTTTVSSSLKPPPDSNNSAAPFRRPLKTTTTPPSNPKPTPKPKPKPAPTSNP--LKNPF 260
Query: 239 PSGPPLTSRFEYT 251
S LT++ T
Sbjct: 261 KSSHALTNKLWLT 299
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 28.1 bits (61), Expect = 2.8
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -3
Query: 314 NAKSISSSQFFGDQNKANADAQATLSKFSGSSAISSADLFGDSSDNVDLAASDLINRI 371
++ S SSS + +++ + ++ S S SS+ISS L S N D A +++RI
Sbjct: 870 SSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISSKSLCSASPVNHDTA*GIILSRI 697
>TC11314
Length = 553
Score = 27.7 bits (60), Expect = 3.6
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 257 SELNSGGSN--VTGHVSVPKSSSSFFSDFGMDSGFQKKSG 294
SEL SG +N + S P SSS+ S G S F+KK G
Sbjct: 374 SELYSGSANGGASSSSSAPPSSSTASSKKGKRSDFEKKFG 493
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.307 0.123 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,840,333
Number of Sequences: 28460
Number of extensions: 75639
Number of successful extensions: 447
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of query: 409
length of database: 4,897,600
effective HSP length: 92
effective length of query: 317
effective length of database: 2,279,280
effective search space: 722531760
effective search space used: 722531760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC137670.5