BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137670.4 + phase: 0
(324 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17718 similar to UP|O82171 (O82171) At2g35210 protein (Zinc fi... 137 2e-33
TC10059 weakly similar to UP|O82171 (O82171) At2g35210 protein (... 137 2e-33
CN825243 135 9e-33
TC10060 similar to UP|Q923L6 (Q923L6) Eosinophil-associated ribo... 61 2e-10
TC11554 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragmen... 32 0.11
TC15003 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid O-meth... 30 0.55
TC14602 UP|Q8GS56 (Q8GS56) Phosphoenolpyruvate carboxylase kinas... 29 0.94
BI419936 28 2.1
TC13228 homologue to UP|Q9LNN8 (Q9LNN8) F8L10.1 protein, partial... 28 2.7
TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing fact... 28 2.7
TC15128 28 2.7
TC15734 27 3.6
AU089149 27 3.6
TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like... 27 3.6
TC9358 weakly similar to GB|AAH10781.1|14789753|BC010781 RIO kin... 27 4.7
AV776568 27 4.7
AV407455 27 4.7
AV766044 27 4.7
TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, par... 27 6.1
>TC17718 similar to UP|O82171 (O82171) At2g35210 protein (Zinc finger
protein Glo3-like), partial (18%)
Length = 631
Score = 137 bits (346), Expect = 2e-33
Identities = 74/88 (84%), Positives = 80/88 (90%)
Frame = +2
Query: 237 FGDQNKARDAETRATLSKFSSSSAISSADFFGDSADSSIDLAASDLINRLSFQAQQDISS 296
FGDQ+KA D E +ATLSKFS S+AISSAD FGDS D+SIDL+ASDLINRLSFQAQQDISS
Sbjct: 2 FGDQSKA-DVEAKATLSKFSGSNAISSADLFGDSGDNSIDLSASDLINRLSFQAQQDISS 178
Query: 297 LKNIAGETGKKLSSLASSLMTDLQDRIL 324
LKNIAGETGKKLSSLAS+LMTD DRIL
Sbjct: 179 LKNIAGETGKKLSSLASTLMTDFGDRIL 262
>TC10059 weakly similar to UP|O82171 (O82171) At2g35210 protein (Zinc finger
protein Glo3-like), partial (19%)
Length = 442
Score = 137 bits (346), Expect = 2e-33
Identities = 76/95 (80%), Positives = 84/95 (88%), Gaps = 1/95 (1%)
Frame = +2
Query: 231 ISSSQFFGDQNKARDAETRATLSKFSSSSAISSADFFG-DSADSSIDLAASDLINRLSFQ 289
ISSSQFFGD NKA D E RATLSKFS S+AISSAD FG DS DSSIDLAA+ L+NRLSFQ
Sbjct: 2 ISSSQFFGD-NKAADVEARATLSKFSGSNAISSADLFGGDSGDSSIDLAANVLLNRLSFQ 178
Query: 290 AQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL 324
Q+D+SSLKNIAGETGKKL+SLAS+LM+D QDRIL
Sbjct: 179 VQEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL 283
>CN825243
Length = 315
Score = 135 bits (340), Expect = 9e-33
Identities = 71/91 (78%), Positives = 77/91 (84%), Gaps = 3/91 (3%)
Frame = +1
Query: 1 MSFGGNSRAQIFFKQHGWTDGGKIEAKYTSRAAELYRQILTKEVAKSMALEKGLPSSPVA 60
MSFGGN RAQ+FFKQHGWTDGGKIEAKYTSRAAELYRQIL+KEVAKSMA E L SSPVA
Sbjct: 43 MSFGGNGRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEASLLSSPVA 222
Query: 61 SQSS---NGFLDVRTSEVLKENTLDKAEKLE 88
SQS+ NG DV+T+E KENTL+K EK E
Sbjct: 223 SQSAQGVNGLADVKTNESPKENTLEKPEKPE 315
>TC10060 similar to UP|Q923L6 (Q923L6) Eosinophil-associated ribonuclease
10, partial (8%)
Length = 550
Score = 61.2 bits (147), Expect = 2e-10
Identities = 30/39 (76%), Positives = 35/39 (88%)
Frame = +1
Query: 286 LSFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL 324
L Q Q+D+SSLKNIAGETGKKL+SLAS+LM+D QDRIL
Sbjct: 250 LVLQVQEDLSSLKNIAGETGKKLTSLASTLMSDFQDRIL 366
>TC11554 similar to UP|Q9SVI4 (Q9SVI4) ES43 like protein (Fragment), partial
(52%)
Length = 425
Score = 32.3 bits (72), Expect = 0.11
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 13/145 (8%)
Frame = +2
Query: 136 KPEEPPAPVPSTTNNNVSA----------RPSMTSRFEYVDNVQSSELDSRGSNTFNHVS 185
KP+ P + S T +++ RPS + YV ++ E DSRG+N HV
Sbjct: 32 KPKPPRRTLDSFTVKHINKTVRPGDCVLMRPSEPGKSSYVARIERIEADSRGANVKVHV- 208
Query: 186 VPKSSNFFADFGMDSGFPKKFGSNTSKVQIEESDEARKKFSNAKSISSSQFFGDQNKARD 245
+ EES R++F +K + S D A
Sbjct: 209 ------------------------RWYYRPEESIGGRRQFHGSKEVFLSDHL-DFQSADT 313
Query: 246 AETRATLSKFSSSS---AISSADFF 267
E + T+ F S + A+ + DFF
Sbjct: 314 IEAKCTVHSFKSYTKLDAVGNEDFF 388
>TC15003 weakly similar to UP|Q7X9I9 (Q7X9I9) Caffeic acid
O-methyltransferase, partial (26%)
Length = 797
Score = 30.0 bits (66), Expect = 0.55
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -1
Query: 139 EPPAPVPSTTNNNVSARPSMTSRFEYVDNVQSSELDSRGSNTFNHVSVPKSSNFFADFGM 198
+PP P P++TN+++ PS+ +D + + + +N S P SN + +
Sbjct: 743 DPPIPPPTSTNDSIWLNPSLYPEITALDTILAVQTIPSLNNLLYSSSKPVISN*SWPWHL 564
Query: 199 DSGFPKKFGSNT 210
G P S T
Sbjct: 563 KKGVPFSLPSLT 528
>TC14602 UP|Q8GS56 (Q8GS56) Phosphoenolpyruvate carboxylase kinase, complete
Length = 1256
Score = 29.3 bits (64), Expect = 0.94
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 97 HTSASNNLKK-SIGGKKPGKSGGLGARKLNKKPSESFYEQKPEEPPAPVPSTTNNNVSAR 155
H + NNL++ S KP K+ ARK + S + PP P PS ++ N S+
Sbjct: 3 HETKQNNLERESKQCVKP*KASTNSARKSDAAVSAPSSDASTPSPPTPSPSNSSINPSSP 182
Query: 156 PSMT 159
+T
Sbjct: 183 TPLT 194
>BI419936
Length = 503
Score = 28.1 bits (61), Expect = 2.1
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 3/53 (5%)
Frame = +3
Query: 208 SNTSKVQIEESDEARKKF-SNAKSISSSQ--FFGDQNKARDAETRATLSKFSS 257
S ++ +++ S + K+F N KS S S+ F G+Q K R T + LSK+SS
Sbjct: 294 SPENEFKMKRSGVSLKEFIKNGKSNSKSELDFEGEQGKNRVNGTESVLSKYSS 452
>TC13228 homologue to UP|Q9LNN8 (Q9LNN8) F8L10.1 protein, partial (11%)
Length = 421
Score = 27.7 bits (60), Expect = 2.7
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +2
Query: 140 PPAPVPSTTNNNVSARPSMTSRFEYVDNVQSS 171
PP PS ++ RP TSRFE + +Q++
Sbjct: 98 PPTKTPSDKSSRRRHRPDSTSRFEAYNRLQAA 193
>TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing factor 18
(PRP18 homolog) (hPRP18), partial (8%)
Length = 563
Score = 27.7 bits (60), Expect = 2.7
Identities = 23/101 (22%), Positives = 40/101 (38%)
Frame = +1
Query: 89 STSSPRASHTSASNNLKKSIGGKKPGKSGGLGARKLNKKPSESFYEQKPEEPPAPVPSTT 148
S+S+PR++ + N+ K KP P P PP STT
Sbjct: 136 SSSAPRSNRNKSRNSANKRSANWKPNL*NA-------PPPPPPPPPTPPPHPPTSRTSTT 294
Query: 149 NNNVSARPSMTSRFEYVDNVQSSELDSRGSNTFNHVSVPKS 189
+++++ + S S + S++ + GS + S P S
Sbjct: 295 SSSLNKKSSAASASSSSPSPSSAKTTTPGSTVSSTFSRPGS 417
>TC15128
Length = 552
Score = 27.7 bits (60), Expect = 2.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 68 LDVRTSEVLKENTLDKAEKLESTSSPRASHTSASNNLKKSIGGKKPGKSG 117
L+VRT+++ + E LE + RA +N K+IGG + +SG
Sbjct: 371 LEVRTAKIPASVCVVSVEALEKETQTRALANQTANKH*KNIGGAE*ERSG 222
>TC15734
Length = 656
Score = 27.3 bits (59), Expect = 3.6
Identities = 13/31 (41%), Positives = 15/31 (47%)
Frame = +3
Query: 140 PPAPVPSTTNNNVSARPSMTSRFEYVDNVQS 170
PP P PS N S P T+ YVD+ S
Sbjct: 66 PPPPPPSQPNATPSPPPKSTTTMAYVDHAFS 158
>AU089149
Length = 660
Score = 27.3 bits (59), Expect = 3.6
Identities = 13/31 (41%), Positives = 15/31 (47%)
Frame = +2
Query: 140 PPAPVPSTTNNNVSARPSMTSRFEYVDNVQS 170
PP P PS N S P T+ YVD+ S
Sbjct: 53 PPPPPPSQPNATPSPPPKSTTTMAYVDHAFS 145
>TC8264 similar to GB|AAK20861.1|13377784|AF333974 fasciclin-like
arabinogalactan-protein 9 {Arabidopsis thaliana;},
partial (38%)
Length = 942
Score = 27.3 bits (59), Expect = 3.6
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +1
Query: 111 KKPGKS--GGLGARKLNKKPSESFYEQKPEE--PPAPVPSTTNNNVSARPSMTS 160
KKPG + +R N P P + P +P P+T + S PSMTS
Sbjct: 142 KKPGNTPPSSASSRNPNNSPKLRANSTPPPKASPSSPRPTTPSKTSSLAPSMTS 303
Score = 26.6 bits (57), Expect = 6.1
Identities = 14/38 (36%), Positives = 20/38 (51%)
Frame = +2
Query: 113 PGKSGGLGARKLNKKPSESFYEQKPEEPPAPVPSTTNN 150
PG +G L +LN+ P +S P PP +P+T N
Sbjct: 95 PG-TGSLRPGELNRNPRKSRAIHHPHPPPQGIPTTHPN 205
>TC9358 weakly similar to GB|AAH10781.1|14789753|BC010781 RIO kinase 2 {Mus
musculus;} , partial (10%)
Length = 1117
Score = 26.9 bits (58), Expect = 4.7
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 215 IEESDEARKKFSNAKSISSSQFFGDQNK-ARDAETRATLSKFSSSSAISSA 264
IEES EA + +++ K +S + DQN+ DAE +L+K AI+SA
Sbjct: 631 IEESCEAGQSYASDKGDASDEEEHDQNEIENDAELNKSLNK-QRRHAIASA 780
>AV776568
Length = 628
Score = 26.9 bits (58), Expect = 4.7
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Frame = +1
Query: 116 SGGLGARKLNKKPSESFYEQK----PEEPPAPVPSTTNNNVSARPSMTSRFEYVDNVQSS 171
SG A K P S K P PAP P+ NN+ ++ + V+ VQ S
Sbjct: 232 SGARAAAAKKKPPPPSAASPKKRKSPHSSPAPAPTLNPNNLKTPETVQPPRDSVETVQPS 411
>AV407455
Length = 399
Score = 26.9 bits (58), Expect = 4.7
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = +1
Query: 122 RKLNKKPSESFYEQKPEEPPAPVPSTTNNNVSARPSMTS 160
R L P+ + ++ P P P+PS N ++A S TS
Sbjct: 91 RPLTTPPNSVYSDRTPP*SPTPIPSRWENPLAAMAS*TS 207
>AV766044
Length = 391
Score = 26.9 bits (58), Expect = 4.7
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 65 NGFLDVRTSEVLKENTLDKAEKLESTSSPRASHTSASNNLK 105
N F ++ ++K NTL+ EKL+STS +S +S S++L+
Sbjct: 162 NQFSKIQK*NMVKLNTLN-TEKLKSTSPSSSSSSSQSHHLQ 281
>TC9585 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (31%)
Length = 502
Score = 26.6 bits (57), Expect = 6.1
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Frame = +3
Query: 39 ILTKEVAKSMALEKGLPSSPVASQSSNGFLDVRTSEVLKENTLDKAEKLESTSSPRASHT 98
ILT+ M+ + +SPV S SS+ F + +S TL S P AS T
Sbjct: 54 ILTQTNNNIMSCSVAVSNSPVFSPSSSLFSIISSSPESLSLTL-------SHLKPNASST 212
Query: 99 SASNNLKKSIGGKKPGKSGGLGARKLNKKPSESFYEQKPEEPPA----PVPSTTNNNVSA 154
AS+ S P + + PS F + P+ P A P ST+ N
Sbjct: 213 -ASSCASASASASSPSAAA-------SSSPSSPFRLRLPKPPTAFSSGPSSSTSPNGAVL 368
Query: 155 RPSMTSRFE 163
+ +R +
Sbjct: 369 KRKRPTRLD 395
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.306 0.123 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,097,938
Number of Sequences: 28460
Number of extensions: 46981
Number of successful extensions: 397
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of query: 324
length of database: 4,897,600
effective HSP length: 90
effective length of query: 234
effective length of database: 2,336,200
effective search space: 546670800
effective search space used: 546670800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Medicago: description of AC137670.4