TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137667.10 + phase: 0 /pseudo
         (43 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17666 similar to GB|AAP37664.1|30725284|BT008305 At2g43810 {Ar...    89  2e-19
TC11438 homologue to UP|RUXF_ARATH (Q9SUM2) Probable small nucle...    39  2e-04
CB828029                                                               29  0.18
TC8011 similar to UP|TPIC_FRAAN (Q9M4S8) Triosephosphate isomera...    24  7.6

>TC17666 similar to GB|AAP37664.1|30725284|BT008305 At2g43810 {Arabidopsis
           thaliana;}, partial (95%)
          Length = 770

 Score = 89.0 bits (219), Expect = 2e-19
 Identities = 43/43 (100%), Positives = 43/43 (100%)
 Frame = +3

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
           MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG
Sbjct: 273 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 401


>TC11438 homologue to UP|RUXF_ARATH (Q9SUM2) Probable small nuclear
           ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
           (SmF), partial (97%)
          Length = 585

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ +  TEEY+ GQ     G+  IR NNVLY+
Sbjct: 233 MNLQLANTEEYIEGQFTGNLGEILIRCNNVLYL 331


>CB828029 
          Length = 502

 Score = 29.3 bits (64), Expect = 0.18
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ ++ T E VNG  KN  G   IRGN+V+ +
Sbjct: 170 MNLVIDNTVE-VNGNEKNDIGMVVIRGNSVVTV 265


>TC8011 similar to UP|TPIC_FRAAN (Q9M4S8) Triosephosphate isomerase,
            chloroplast precursor  (TIM) , partial (89%)
          Length = 1305

 Score = 23.9 bits (50), Expect = 7.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 16   LKNKYGDAFIRGNNVLYI 33
            LK+K G + IRGNNV  I
Sbjct: 1049 LKDKKGASLIRGNNVCCI 1102


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.312    0.130    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,669
Number of Sequences: 28460
Number of extensions: 2045
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 43
length of database: 4,897,600
effective HSP length: 19
effective length of query: 24
effective length of database: 4,356,860
effective search space: 104564640
effective search space used: 104564640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)