BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137603.10 + phase: 0
(388 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12634 similar to UP|Q8LIK8 (Q8LIK8) OJ1103_E04.5 protein, part... 244 1e-65
TC16917 weakly similar to GB|AAO63411.1|28950975|BT005347 At1g51... 135 2e-32
TC11880 103 6e-23
TC7887 similar to UP|Q9ZWQ8 (Q9ZWQ8) Homolog to plastid-lipid-as... 41 4e-04
TC17451 36 0.012
TC18160 homologue to UP|Q9ZP40 (Q9ZP40) Plastoglobule associated... 35 0.021
TC11495 weakly similar to UP|Q8DLQ9 (Q8DLQ9) Fibrillin, partial ... 30 0.89
TC12757 29 1.2
BP049570 28 2.0
TC18716 similar to UP|Q8S9M1 (Q8S9M1) At2g42130/T24P15.4, partia... 28 2.6
TC12677 similar to UP|Q9FQD6 (Q9FQD6) Glutathione S-transferase ... 28 3.4
TC8724 homologue to UP|Q9AQU5 (Q9AQU5) Plasma membrane integral ... 27 7.6
AI967501 26 9.9
AV770974 26 9.9
>TC12634 similar to UP|Q8LIK8 (Q8LIK8) OJ1103_E04.5 protein, partial (29%)
Length = 384
Score = 244 bits (624), Expect = 1e-65
Identities = 121/127 (95%), Positives = 124/127 (97%)
Frame = +3
Query: 108 FTTRPGTASPIQRTFVGVDFFSVFQEVYLQTNDPRVTNIVSFSDAIGELKVEAAASIGDG 167
FTTRPGTASPIQRTFVGVDFFSVFQE+ L+TNDPRV NIVSFSDAIGELKVEAAASI DG
Sbjct: 3 FTTRPGTASPIQRTFVGVDFFSVFQEISLRTNDPRVGNIVSFSDAIGELKVEAAASIEDG 182
Query: 168 KRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTF 227
KRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRIS+GNKGTTF
Sbjct: 183 KRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRISKGNKGTTF 362
Query: 228 VLQKQTE 234
VLQKQTE
Sbjct: 363 VLQKQTE 383
>TC16917 weakly similar to GB|AAO63411.1|28950975|BT005347 At1g51115
{Arabidopsis thaliana;}, partial (16%)
Length = 356
Score = 135 bits (339), Expect = 2e-32
Identities = 76/117 (64%), Positives = 87/117 (73%)
Frame = +3
Query: 3 LTLRVVNVNSIGFESCSRCSTFISPNPSNSRFVSAGCSKVEQISIVTEESENSLIQALVG 62
+ L++VN+ F CS S P FV CS+VEQISI ESE SLI+A++G
Sbjct: 3 MALKLVNLGFHPFTLTPPCS---SSKPRQCSFVFR-CSQVEQISIA--ESEYSLIEAILG 164
Query: 63 IQGRGRSSSPQQLNAIERAIQVLEHIGGVSDPTNSSLIEGRWQLIFTTRPGTASPIQ 119
QGRGRSSSP QLNAIERAIQVLE +GGV DPTNS+LIEGRWQL+FTTRPGTASPIQ
Sbjct: 165 TQGRGRSSSPNQLNAIERAIQVLERLGGVPDPTNSNLIEGRWQLVFTTRPGTASPIQ 335
>TC11880
Length = 509
Score = 103 bits (256), Expect = 6e-23
Identities = 50/75 (66%), Positives = 61/75 (80%)
Frame = +1
Query: 313 NILLGLKFSMSGIFVKSSPKVYEVTMDDAAIIGGPFGYPLEFGKKFILEILFNDGKVRIS 372
+ILLGLKFSM+G FVK +YEVTMDDAAIIGG FG PL KF+LE+LF+D KVRIS
Sbjct: 1 DILLGLKFSMTGNFVKIGSDMYEVTMDDAAIIGGAFGLPLHMDNKFVLELLFSDQKVRIS 180
Query: 373 RGDNEIIFVHARTNA 387
RG NE++FVH R+++
Sbjct: 181 RGYNEVLFVHIRSDS 225
>TC7887 similar to UP|Q9ZWQ8 (Q9ZWQ8) Homolog to plastid-lipid-associated
protein, partial (65%)
Length = 1004
Score = 40.8 bits (94), Expect = 4e-04
Identities = 52/209 (24%), Positives = 79/209 (36%), Gaps = 42/209 (20%)
Frame = +2
Query: 66 RGRSSSPQQLNAIERAIQVLEHIGGVSDPTNS-SLIEGRWQLIFTTRPGTASPIQR-TFV 123
RG ++ I I LE + PT++ +L+ G+W L +T+ G + R TF
Sbjct: 11 RGLKATSDTRAEIVELITQLEAKNPTAAPTDALTLLNGKWILAYTSFAGLYPLLSRGTFS 190
Query: 124 GVDFFSVFQEVYLQTNDPRVTNIVSFSDAIGELKVEAAAS--IGDGKRILFRFDRAAFSF 181
V + Q + + + V N V F+ + + A I KR+ +F+
Sbjct: 191 LVKVEEISQTI--DSENFAVENSVRFAGPLTTTSISTNAKFEIRSPKRVQIKFEEGIIGT 364
Query: 182 KFLPFKVPYP------------VPFK--------------------------LLGDEAKG 203
L + P PFK + G A+
Sbjct: 365 PQLTDSLVIPENVEFLGQNIDLTPFKGILTSVQDTASSVVRTISNQPPLKIPISGSNAQS 544
Query: 204 WLDTTYLSHSGNLRISRGNKGTTFVLQKQ 232
WL TTYL LRISRG+ G+ FVL K+
Sbjct: 545 WLLTTYLDEE--LRISRGDGGSVFVLIKE 625
>TC17451
Length = 402
Score = 35.8 bits (81), Expect = 0.012
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 14/105 (13%)
Frame = +3
Query: 20 RCST--FISPNPSNSRFVSAGCS-----KVEQISIVT-----EESENSLIQALVGIQG-- 65
RCS+ ++ +PS + + C + +S+ T E EN +Q L IQ
Sbjct: 84 RCSSPLYLPSSPSTTTRKPSNCHVKSFPRKMSLSMATAQAYDSELENKKLQLLTSIQDTQ 263
Query: 66 RGRSSSPQQLNAIERAIQVLEHIGGVSDPTNSSLIEGRWQLIFTT 110
RG ++P Q +IE A+ +E DP N + ++G W+L +T+
Sbjct: 264 RGLLTTPDQRFSIEEALVNVEGCNK-GDPINLNKLDGTWRLQYTS 395
>TC18160 homologue to UP|Q9ZP40 (Q9ZP40) Plastoglobule associated protein
PG1 precursor, partial (15%)
Length = 458
Score = 35.0 bits (79), Expect = 0.021
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +3
Query: 185 PFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEP 235
P K+P P G+ WL TTYL +LRIS+G+ G FVL ++ P
Sbjct: 30 PLKIPLP------GERTSSWLITTYLDE--DLRISKGD-GGLFVLAREGSP 155
>TC11495 weakly similar to UP|Q8DLQ9 (Q8DLQ9) Fibrillin, partial (15%)
Length = 523
Score = 29.6 bits (65), Expect = 0.89
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 203 GWLDTTYLSHSGNLRISRGNKGTTFVLQK 231
G L+ TYL LR+SRG+KG F+L++
Sbjct: 2 GSLEITYLDEE--LRVSRGDKGNLFILKR 82
>TC12757
Length = 710
Score = 29.3 bits (64), Expect = 1.2
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Frame = -1
Query: 39 CSKVEQISIVTEESENSLIQA-LVGIQGRG----RSSSPQQL------NAIERAIQVLEH 87
CS + +S++ + E + A IQ R R+ + +L A ER Q H
Sbjct: 356 CSLIRSVSLIVSKQERRRVTAGAESIQSRNGN*TRAGTKHKLITLSLPGASERKNQRRHH 177
Query: 88 IGGVSDPTNSSLIEGRWQLIFTTRPGT 114
IGG+ P S + ++ + PGT
Sbjct: 176 IGGIDVPL*KSEVSDGYREELSVEPGT 96
>BP049570
Length = 399
Score = 28.5 bits (62), Expect = 2.0
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = -1
Query: 93 DPTNSSLIEGRWQLIFTT 110
+P S+L++G+W+LI+TT
Sbjct: 69 NPLKSNLLDGKWELIYTT 16
>TC18716 similar to UP|Q8S9M1 (Q8S9M1) At2g42130/T24P15.4, partial (53%)
Length = 620
Score = 28.1 bits (61), Expect = 2.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 67 GRSSSPQQLNAIERAIQVLEHIGGVSDPTNSSLIEGRW 104
G+++ Q+++ ER I LE + PT S +EGRW
Sbjct: 309 GKTTEYQKIDVNER-ITGLERLNPTPRPTTSPFLEGRW 419
>TC12677 similar to UP|Q9FQD6 (Q9FQD6) Glutathione S-transferase GST 22
(Fragment) , complete
Length = 876
Score = 27.7 bits (60), Expect = 3.4
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 33 RFVSAGCSKVEQISIVTEESENSLIQALVGIQGRGRSSSPQQLNAIERAIQVLEHI 88
RF++AGC + VTE +E +L L+ G P Q+ + R + +L+H+
Sbjct: 813 RFLAAGCRLYFILKQVTENTEVTLKLDLLLGGGLNA*KIP*QIKQLNRVLVLLKHL 646
>TC8724 homologue to UP|Q9AQU5 (Q9AQU5) Plasma membrane integral protein
ZmPIP1-4 (Plasma membrane integral protein ZmPIP1-3),
partial (93%)
Length = 1560
Score = 26.6 bits (57), Expect = 7.6
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -1
Query: 258 SLNKNSGEEDPELEEGEWQMIWNSQTVTDSWLENAANGLMGKQIVEKNGR 307
S N+ S E+P + +++N T T SW+ ++ G Q+ +++ +
Sbjct: 888 SSNERSNPENPMVIPSMVSVVYNGSTKTPSWVNASSCDGNGSQVDQEHSK 739
>AI967501
Length = 393
Score = 26.2 bits (56), Expect = 9.9
Identities = 26/114 (22%), Positives = 47/114 (40%), Gaps = 10/114 (8%)
Frame = +1
Query: 10 VNSIGFESCSRCSTFISPNPSNSRFVS-AGCSKVEQISIVTEESENSLIQALVGIQGRGR 68
VN E C+ ST + + +S A K EQ + +E+++ I GR R
Sbjct: 37 VNVPRAEVCATASTLSKTDSGSKSDISKASERKQEQQQVPQKETQSKQIC------GRSR 198
Query: 69 SSSPQQLNAIERAI---------QVLEHIGGVSDPTNSSLIEGRWQLIFTTRPG 113
+ Q A+ RA+ Q+++ + + D +W+++FT G
Sbjct: 199 TKVQMQGVAVGRAVDLNTLDGYDQLIDELEQLFDLKGQLQHRNKWEIVFTDDEG 360
>AV770974
Length = 487
Score = 26.2 bits (56), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 273 GEWQMIWNSQTVTDSW 288
G+W+ WNS+ V D W
Sbjct: 307 GQWECRWNSKWVGDGW 260
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,868,761
Number of Sequences: 28460
Number of extensions: 72176
Number of successful extensions: 397
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of query: 388
length of database: 4,897,600
effective HSP length: 92
effective length of query: 296
effective length of database: 2,279,280
effective search space: 674666880
effective search space used: 674666880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC137603.10