BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137602.6 + phase: 0
(425 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP038485 95 3e-20
BP071106 91 4e-19
TC14866 similar to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ... 59 2e-09
AV426757 54 6e-08
TC17298 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor,... 54 6e-08
TC15903 similar to UP|Q40724 (Q40724) Transcriptional activator ... 53 8e-08
TC12543 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor,... 53 8e-08
TC14298 homologue to UP|Q8L5W2 (Q8L5W2) bZIP transcription facto... 51 3e-07
TC14457 similar to UP|Q8GTZ1 (Q8GTZ1) bZIP transcription factor,... 50 5e-07
BU494285 42 4e-06
TC18887 similar to UP|Q94KA6 (Q94KA6) bZIP transcription factor ... 44 4e-05
BP080797 43 1e-04
BP047366 42 2e-04
AW164126 41 4e-04
TC14213 40 6e-04
TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%) 40 0.001
BP037350 39 0.002
BP070605 39 0.002
TC15653 similar to UP|Q941L5 (Q941L5) bZIP transcription factor ... 38 0.003
TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precu... 37 0.005
>BP038485
Length = 474
Score = 94.7 bits (234), Expect = 3e-20
Identities = 52/65 (80%), Positives = 55/65 (84%), Gaps = 6/65 (9%)
Frame = -3
Query: 367 QRTTPVSTENLLSRVNNNSGSNDRTVEDENGYCDNKPNS------GAKLHQLLDASPRAD 420
+R TPVSTENLLSRVNN+S SNDRTVEDENG+ DNK NS GAKLHQLLDASPRAD
Sbjct: 472 ERATPVSTENLLSRVNNSS-SNDRTVEDENGFRDNKSNSGSNSGGGAKLHQLLDASPRAD 296
Query: 421 AVAAG 425
AVAAG
Sbjct: 295 AVAAG 281
>BP071106
Length = 402
Score = 90.9 bits (224), Expect = 4e-19
Identities = 44/87 (50%), Positives = 55/87 (62%), Gaps = 3/87 (3%)
Frame = +3
Query: 13 EKPSSPVTVDQTNQTNVHVYPDWAA-MQAYYGPRVAMPPYYNSPVASGHTPHPYMWGPPQ 71
+KPS P + T + YPDW++ MQAYY P V PP+Y S VAS HPY+WG
Sbjct: 135 DKPSKPSSTSSTQISPTPSYPDWSSSMQAYYAPGVTPPPFYASTVASPAI-HPYIWGGQH 311
Query: 72 PMMPPYGH--PYAAMYPHGGVYTHPAV 96
P++PPYG PY AMYP G VY HP++
Sbjct: 312 PLIPPYGTPVPYPAMYPPGAVYAHPSM 392
>TC14866 similar to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ATB2,
partial (60%)
Length = 948
Score = 58.9 bits (141), Expect = 2e-09
Identities = 34/110 (30%), Positives = 61/110 (54%)
Frame = +3
Query: 273 EAWIQNERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRLAE 332
E +Q + ++ +RKQSNRESARRSR+RKQ+ E+L +V L E+ + + IN ++
Sbjct: 27 EGDLQMVMDQRKNKRKQSNRESARRSRMRKQSHLEDLTSQVTQLTKENGEILTNINITSQ 206
Query: 333 NSERLRMENAALKEKFKIAKLGQPKEIILTNIDSQRTTPVSTENLLSRVN 382
+ + EN+ L+ ++ +L Q + + I+ +T+ +T N
Sbjct: 207 QYQNVETENSILRA--QMGELSQRLQSLNDIINVIKTSAAATTTTTGSYN 350
>AV426757
Length = 415
Score = 53.5 bits (127), Expect = 6e-08
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Frame = +1
Query: 271 PPEAWIQNERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRL 330
PP A + + KR +R +NR+SA+RSR+RK EL R V +L E ++L + L
Sbjct: 10 PPFATTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 189
Query: 331 AENSERLRMENAALKEKFKIAKLGQPKEIILTNIDS-----QRTTPVSTENLLSRVNNNS 385
L ++N+ LK+ +IA L Q K + D+ +R + + L ++ NN+
Sbjct: 190 DHQRLILNVDNSTLKQ--RIAALAQDKIFKDAHQDALKKEIERLRHIYHQQSLQKMGNNN 363
Query: 386 GSND 389
SN+
Sbjct: 364 NSNN 375
>TC17298 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor, partial
(39%)
Length = 484
Score = 53.5 bits (127), Expect = 6e-08
Identities = 36/93 (38%), Positives = 52/93 (55%)
Frame = +1
Query: 249 RNSSSVHSKTNPTSTPQPSAVLPPEAWIQNERELKRERRKQSNRESARRSRLRKQAEAEE 308
+NSSS S + + + ++ I NER + RR SNRESARRSR+RKQ +E
Sbjct: 220 QNSSSCISSNSTSDEAEDQQ--QQQSLIINER---KHRRMISNRESARRSRMRKQKHLDE 384
Query: 309 LARKVESLNAESASLRSEINRLAENSERLRMEN 341
L V L E+ L ++N L+E+ +R+ EN
Sbjct: 385 LWSMVVCLRNENHQLLEKLNHLSESHDRVVQEN 483
>TC15903 similar to UP|Q40724 (Q40724) Transcriptional activator protein
(RITA-1 protein), partial (21%)
Length = 603
Score = 53.1 bits (126), Expect = 8e-08
Identities = 28/46 (60%), Positives = 34/46 (73%)
Frame = +1
Query: 278 NERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASL 323
N +++KR RRK SNRESARRSR RKQA EL +VE L E+A+L
Sbjct: 451 NPQDVKRLRRKVSNRESARRSRRRKQAHLAELETQVEKLKLENATL 588
>TC12543 similar to UP|Q9AT29 (Q9AT29) bZIP transcription factor, partial
(52%)
Length = 510
Score = 53.1 bits (126), Expect = 8e-08
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = +3
Query: 283 KRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRLAENSERLRMENA 342
++ RR SNRESARRSR+RKQ +EL +V L E+ L +++ +E+ +++ ENA
Sbjct: 237 RKHRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLLDKLSHASESHDQVVQENA 416
Query: 343 ALKEK 347
LKE+
Sbjct: 417 QLKEE 431
>TC14298 homologue to UP|Q8L5W2 (Q8L5W2) bZIP transcription factor ATB2,
partial (62%)
Length = 1585
Score = 51.2 bits (121), Expect = 3e-07
Identities = 41/143 (28%), Positives = 72/143 (49%), Gaps = 5/143 (3%)
Frame = +3
Query: 239 SSAMTTALELRNSSSVHSKTNPTSTPQPSAVLPPEAWIQNERELKRERRKQSNRESARRS 298
+SA+T ++ L SSS ++ +S Q S E +Q + ++ +R SNRESARRS
Sbjct: 582 TSAITISICLMASSS--GTSSGSSLLQNSG---SEEDLQAVMDQRKRKRMISNRESARRS 746
Query: 299 RLRKQAEAEELARKVESLNAESASLRSEINRLAENSERLRMENAALKEKF-----KIAKL 353
R+RKQ ++LA +V L E+ + + +N + + EN+ L+ + ++ L
Sbjct: 747 RMRKQKHLDDLASQVTQLRKENQQIITSVNITTQQYLSVEAENSVLRAQMGELSNRLESL 926
Query: 354 GQPKEIILTNIDSQRTTPVSTEN 376
+ E++ N + TT N
Sbjct: 927 NEIIEVLNANSAAFGTTFTEPSN 995
>TC14457 similar to UP|Q8GTZ1 (Q8GTZ1) bZIP transcription factor, partial
(50%)
Length = 645
Score = 50.4 bits (119), Expect = 5e-07
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +1
Query: 283 KRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRLAENSERLRMENA 342
K+ +R QSNRESARRSR+RKQ E ++ +VE L E+ + + I + + ENA
Sbjct: 19 KKRKRMQSNRESARRSRMRKQEHLEGMSAQVEQLKKENNQISTNIGVTTQMYLNVEAENA 198
Query: 343 ALK 345
L+
Sbjct: 199 ILR 207
>BU494285
Length = 504
Score = 41.6 bits (96), Expect(2) = 4e-06
Identities = 34/143 (23%), Positives = 65/143 (44%), Gaps = 15/143 (10%)
Frame = +1
Query: 158 GAESRQSQSVNTEGSSDGSDGNTSGANQTR---RKRSREGTPTTDGEGKTNTQGSQISKE 214
GA S+ +S +EG+S+GSD N+ ++ + R+ S E P+ +G TQ ++
Sbjct: 55 GAHSKSGES-GSEGTSEGSDANSQNDSELKSGGRRDSFEDEPSQNGTAVHTTQNGGLNTP 231
Query: 215 IAASDKMMAVAPAGVTGQLVGPVASSAMTTALEL------RNSSSVHSKTNPTSTPQPSA 268
M+ ++ G G + GP + + ++ N ++H T+ A
Sbjct: 232 HQTMS-MVPISAGGAPGAVPGPATN--LNIGMDYWGTPTSSNIPALHGNVPSTAVAGGMA 402
Query: 269 V------LPPEAWIQNERELKRE 285
+ + W+Q+EREL+R+
Sbjct: 403 TGGSRDGVQSQHWLQDERELQRQ 471
Score = 25.4 bits (54), Expect(2) = 4e-06
Identities = 11/13 (84%), Positives = 12/13 (91%)
Frame = +3
Query: 284 RERRKQSNRESAR 296
+ RRKQSNRESAR
Sbjct: 465 KTRRKQSNRESAR 503
>TC18887 similar to UP|Q94KA6 (Q94KA6) bZIP transcription factor 6, partial
(64%)
Length = 944
Score = 44.3 bits (103), Expect = 4e-05
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Frame = +3
Query: 228 GVTGQLVGPVASSAMTTALELRNSSSVHSKTNPTSTPQP------SAVLPPEAWIQNERE 281
G+ G GPV ++ + A ++ +S + TS+ P + + +
Sbjct: 600 GLVGLAPGPVQLASGSPANQMTSSDIMGKSNGDTSSVSPVPYVFNGGLRGRKTGAVEKVI 779
Query: 282 LKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSEINRLAE 332
+R+RR NRESA RSR RKQA EL ++V L E+ L+ + + E
Sbjct: 780 ERRQRRMIKNRESAARSRARKQAYTMELEQEVAKLKEENEELQKKQEEIME 932
>BP080797
Length = 498
Score = 42.7 bits (99), Expect = 1e-04
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -2
Query: 272 PEAWIQNERELKRE-RRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSE 326
P+A+ E+ L+R RRK NRESA RSR RKQA EL KV L ++ L+ E
Sbjct: 473 PDAY---EKALERRLRRKIKNRESAARSRARKQAYHNELVSKVTRLEQDNIKLKKE 315
>BP047366
Length = 535
Score = 42.0 bits (97), Expect = 2e-04
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = -3
Query: 283 KRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLRSE 326
+R++R NRESA RSR RKQA +EL KV L E+ LR +
Sbjct: 485 RRQKRMIKNRESAARSRARKQAYTQELEIKVSRLEEENERLRRQ 354
>AW164126
Length = 387
Score = 40.8 bits (94), Expect = 4e-04
Identities = 27/85 (31%), Positives = 36/85 (41%), Gaps = 7/85 (8%)
Frame = +2
Query: 46 VAMPPYYNSPVASGHTPHPYMWGPPQPMM----PPYGH---PYAAMYPHGGVYTHPAVPI 98
++ P YY SP +P PY + P P PPY + P + PH Y P
Sbjct: 116 ISKPYYYKSPPPPSPSPKPYYYKSPPPPSPSPPPPYYYKSPPPPSPVPHPPYYYKSPPPP 295
Query: 99 GPHPHSQGISSSPATGTPLSIETPP 123
P PH SSP P +++PP
Sbjct: 296 SPIPHPPYYYSSP----PPPVKSPP 358
Score = 30.4 bits (67), Expect = 0.58
Identities = 22/76 (28%), Positives = 28/76 (35%), Gaps = 2/76 (2%)
Frame = +3
Query: 44 PRVAMPPYYNSPVASGHTPH-PYMWGPPQPMMPPYGHPYAAMYPH-GGVYTHPAVPIGPH 101
P P YY SP PH PY + P P P H + + H + H + H
Sbjct: 18 PSPPPPYYYKSPPPPSPVPHPPYYYKSPPPPSPSLNHTTTSPHHHPHHLQNHTTINHLHH 197
Query: 102 PHSQGISSSPATGTPL 117
H + P T PL
Sbjct: 198 LHH--LLHHPTTTNPL 239
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +2
Query: 44 PRVAMPPYYNSPVASGHTPH-PYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGPHP 102
P P YY SP PH PY + P P P PY Y+ P P+ P
Sbjct: 203 PSPPPPYYYKSPPPPSPVPHPPYYYKSPPPPSPIPHPPY--------YYSSPPPPVKSPP 358
Score = 28.1 bits (61), Expect = 2.9
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = +2
Query: 49 PPYYNSPVASGHTPHP---YMWGPPQPMMPPYGHPY 81
P YY SP PHP Y PP PP PY
Sbjct: 266 PYYYKSPPPPSPIPHPPYYYSSPPPPVKSPPPPTPY 373
>TC14213
Length = 1284
Score = 40.4 bits (93), Expect = 6e-04
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Frame = +1
Query: 44 PRVAMPPYYNS-------PVASGHTPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAV 96
P +A+PP P + G+ P P +G P P PYG PY +P
Sbjct: 739 PAMAVPPAQQMSRIDQPVPPSVGYAPQPAPYGQPAPQPAPYGQPYG----------YPPA 888
Query: 97 PIGPHPHSQGISSSPATGTPLSIETPP 123
P P +QG PATG P + PP
Sbjct: 889 P----PPAQGY---PATGYPPAAYPPP 948
>TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%)
Length = 507
Score = 39.7 bits (91), Expect = 0.001
Identities = 23/71 (32%), Positives = 40/71 (55%), Gaps = 2/71 (2%)
Frame = +2
Query: 279 ERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLN--AESASLRSEINRLAENSER 336
E +L+R + ++ E R++ LR Q + +LAR+++S A + E + L E ER
Sbjct: 149 ETKLRRLKDLEAEAEQLRKTNLRLQMDNSDLARRLDSTQILANAVLEDPEADALREEGER 328
Query: 337 LRMENAALKEK 347
LR+EN L ++
Sbjct: 329 LRLENEGLTKE 361
>BP037350
Length = 495
Score = 38.9 bits (89), Expect = 0.002
Identities = 21/42 (50%), Positives = 25/42 (59%)
Frame = -2
Query: 283 KRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLR 324
+R++R NRESA RSR RK A EL KV L E+ LR
Sbjct: 374 RRQKRMIKNRESAARSRARKHAYTNEL*NKVSRLEEENERLR 249
>BP070605
Length = 393
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/69 (34%), Positives = 30/69 (42%)
Frame = -2
Query: 55 PVASGHTPHPYMWGPPQPMMPPYGHPYAAMYPHGGVYTHPAVPIGPHPHSQGISSSPATG 114
P + G+ P P +G P P PYG PY +P P P +QG PATG
Sbjct: 359 PPSVGYAPQPAPYGQPAPQPAPYGQPYG----------YPPAP----PPAQGY---PATG 231
Query: 115 TPLSIETPP 123
P + PP
Sbjct: 230 YPPAAYPPP 204
>TC15653 similar to UP|Q941L5 (Q941L5) bZIP transcription factor BZI-4,
partial (25%)
Length = 511
Score = 38.1 bits (87), Expect = 0.003
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +2
Query: 283 KRERRKQSNRESARRSRLRKQAEAEELARKVESL 316
++ +R SNRESARRSR+RKQ + E+L ++ L
Sbjct: 404 RKRKRMVSNRESARRSRMRKQKQLEDLTAEMSRL 505
>TC14645 similar to UP|Q41122 (Q41122) Proline-rich protein precursor,
partial (52%)
Length = 1060
Score = 37.4 bits (85), Expect = 0.005
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Frame = +2
Query: 44 PRVAMPP--YYNSPVASGHTP-------------HPYMWGPPQPMMPPYGHPYAAMYPHG 88
P VA PP Y+N PVA H P H + PP P P P ++P
Sbjct: 185 PPVAAPPPNYHNHPVAPVHPPTHSPIHPPAHAPHHHHHHHPPAPAPAPIKPP---VHPPT 355
Query: 89 GVYTHPAVPIGPHPHSQGISSSPATGTPLSIETPP 123
V P P G H H S +PA +I PP
Sbjct: 356 SVPVKP--PTGHHHHHHPPSPAPAPALYTTITLPP 454
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.305 0.123 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,607,526
Number of Sequences: 28460
Number of extensions: 116725
Number of successful extensions: 1203
Number of sequences better than 10.0: 179
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of query: 425
length of database: 4,897,600
effective HSP length: 93
effective length of query: 332
effective length of database: 2,250,820
effective search space: 747272240
effective search space used: 747272240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC137602.6