
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137602.16 - phase: 0 /partial
(167 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW719680 82 4e-17
AV417025 63 2e-11
CB829657 58 7e-10
TC12349 similar to UP|Q9SJW0 (Q9SJW0) Transfactor-like protein, ... 58 9e-10
TC19936 homologue to UP|Q9SAK5 (Q9SAK5) T8K14.15 protein, partia... 54 1e-08
CB829663 53 3e-08
TC8118 similar to GB|AAN28771.1|23505823|AY143832 At3g11200/F11B... 31 0.12
BP043430 30 0.28
TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like pro... 30 0.28
TC8119 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding protei... 30 0.28
BP054131 28 0.80
CB829198 28 1.0
CB827384 27 1.4
TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-ric... 27 1.8
AV408295 27 1.8
AV421731 27 1.8
TC8653 similar to UP|AAS46232 (AAS46232) Methionine sulfoxide re... 27 2.3
BP047608 27 2.3
TC10075 similar to UP|SPOP_HUMAN (O43791) Speckle-type POZ prote... 27 2.3
TC11105 weakly similar to GB|AAM61217.1|21536885|AY084654 anthra... 26 3.0
>AW719680
Length = 525
Score = 82.4 bits (202), Expect = 4e-17
Identities = 44/96 (45%), Positives = 63/96 (64%)
Frame = +1
Query: 64 DSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHENDGPTMPKKPRFKWSRDLHHKFVV 123
D+ + S++ + S+KR+D +E E D +D T+ KKPR WS +LH +FV
Sbjct: 40 DADYSSSANEGSWRNSKKRRD-------DEEEGDERDDSSTL-KKPRVVWSVELHQQFVA 195
Query: 124 AVNQFGVEKARPKKILNLMNIENLTKEHVASHLQVF 159
AV+Q G++KA PKKIL LMN+ LT+E+VASHLQ +
Sbjct: 196 AVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKY 303
>AV417025
Length = 424
Score = 63.2 bits (152), Expect = 2e-11
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Frame = +1
Query: 73 NKIEKPSRKRKDGNEDDVEEE---NEYDHE------NDGPTMPKKPRFKWSRDLHHKFVV 123
+++ KPS + GN+ + + +H + + P KPR +W+ +LH FV
Sbjct: 85 DRVSKPSSQYPVGNQSQAIPQLPASSGEHHAVTAPSSSANSAPAKPRMRWTPELHEAFVE 264
Query: 124 AVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQVF 159
AVNQ G E+A PK +L LM +E LT HV SHLQ +
Sbjct: 265 AVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 375
>CB829657
Length = 518
Score = 58.2 bits (139), Expect = 7e-10
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +2
Query: 100 NDGPTMPKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQV 158
++G + K R +W++DLH KFV VN+ G +KA PK IL +M+ + LT H+ SHLQ
Sbjct: 53 SNGSVILSKTRIRWTKDLHEKFVECVNRLGGADKATPKAILKMMDSDGLTIYHIKSHLQK 232
Query: 159 F 159
+
Sbjct: 233 Y 235
>TC12349 similar to UP|Q9SJW0 (Q9SJW0) Transfactor-like protein, partial
(48%)
Length = 582
Score = 57.8 bits (138), Expect = 9e-10
Identities = 29/71 (40%), Positives = 41/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 98 HENDGPTMPKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHL 156
+E + P K R +W+ +LH +FV AV Q G ++A PK +L +M +E LT HV SHL
Sbjct: 150 NEPNNPNFASKQRLRWTHELHGRFVDAVAQLGGPDRATPKGVLRVMGVEGLTIYHVKSHL 329
Query: 157 QVFFFISYALD 167
Q + Y D
Sbjct: 330 QKYRLAKYIHD 362
>TC19936 homologue to UP|Q9SAK5 (Q9SAK5) T8K14.15 protein, partial (23%)
Length = 444
Score = 54.3 bits (129), Expect = 1e-08
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +3
Query: 104 TMPKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQ 157
T KPR +W+ +LH +FV AV Q G +KA PK I+ +M ++ LT H+ SHLQ
Sbjct: 222 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 386
>CB829663
Length = 485
Score = 52.8 bits (125), Expect = 3e-08
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 108 KPRFKWSRDLHHKFVVAVNQFG-VEKARPKKILNLMNIENLTKEHVASHLQ 157
K R +WS+DLH F++ VN G EKA+PK IL +M + L+ H+ SHLQ
Sbjct: 119 KRRIRWSKDLHEPFMMIVNSLGGPEKAKPKAILEMMKSDLLSISHIKSHLQ 271
>TC8118 similar to GB|AAN28771.1|23505823|AY143832 At3g11200/F11B9.12
{Arabidopsis thaliana;}, partial (89%)
Length = 1177
Score = 30.8 bits (68), Expect = 0.12
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 46 TSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENE 95
T ++ D P +DSG+ + +SSD +++ + ++G E++ +E +E
Sbjct: 566 TDRKPAKDKPATDSGSKSRGSTKRSSDGQVKSNPKFAEEGYEEEDDEHSE 715
>BP043430
Length = 493
Score = 29.6 bits (65), Expect = 0.28
Identities = 16/54 (29%), Positives = 30/54 (54%)
Frame = -1
Query: 48 KRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHEND 101
K S DD N SG D + +DN++++ + +D N+DD E+E ++++
Sbjct: 391 KASGDD--NEGSGKDNDD---EGNDNEVDEEDEEEEDSNDDDDGSESEEFNDDE 245
>TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like protein III,
complete
Length = 2302
Score = 29.6 bits (65), Expect = 0.28
Identities = 13/40 (32%), Positives = 24/40 (59%), Gaps = 4/40 (10%)
Frame = -1
Query: 33 VKMIWQHVIRKKKTSKRSND----DVPNSDSGNGIDSAVT 68
+K +W+ ++ + +KR N ++P+ GNG D+AVT
Sbjct: 394 IKCLWKQLVHDQGLAKRINSLKLLNIPDILDGNGADAAVT 275
>TC8119 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding protein-like,
partial (85%)
Length = 1249
Score = 29.6 bits (65), Expect = 0.28
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 46 TSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKD-GNEDDVEEENE 95
T ++ D P DSG+ +SSD +++ + K D G E+D +E +E
Sbjct: 643 TERKPIKDKPTVDSGSKSRGGTKRSSDGQVKSSNPKFADEGYEEDEDEHSE 795
>BP054131
Length = 500
Score = 28.1 bits (61), Expect = 0.80
Identities = 15/58 (25%), Positives = 30/58 (50%)
Frame = -2
Query: 42 RKKKTSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHE 99
R+K++ + D+ S G + + K + + S+ + D +ED+VEE+ E D +
Sbjct: 379 RRKESMDKLRMDMEKSGGGTVVLNTGLKDQE---KAKSKSKMDEDEDEVEEDEEMDDD 215
>CB829198
Length = 562
Score = 27.7 bits (60), Expect = 1.0
Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Frame = +3
Query: 51 NDDVP---NSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHE 99
NDDV +SDS + + DN+ KP R + + + E N+ D+E
Sbjct: 267 NDDVEESQHSDSKEETEEEEDEDGDNENNKPKRAKAAKKKKNKERSNKSDNE 422
>CB827384
Length = 548
Score = 27.3 bits (59), Expect = 1.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 1 LVFLKNDDLKLVMKAIDVGACDYLLKPVQLKEVKMI 36
+V + L + + ++ GA D+LLKPV+L +V+ +
Sbjct: 392 VVMSSENILTRIDRCLEEGAEDFLLKPVKLSDVRRL 499
>TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein,
partial (30%)
Length = 539
Score = 26.9 bits (58), Expect = 1.8
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 69 KSSDNKIEKPS-RKRKDGNEDDVEEENEYDHENDGPTMPKKPR 110
+ + +E+ S R+R D E+D EEE E + E + ++PR
Sbjct: 244 EEEEKDLERESERERDDEREEDGEEEREEEPETEPDGGERRPR 116
>AV408295
Length = 426
Score = 26.9 bits (58), Expect = 1.8
Identities = 13/66 (19%), Positives = 29/66 (43%)
Frame = +3
Query: 30 LKEVKMIWQHVIRKKKTSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDD 89
L ++K + Q + K + S P+ + D +++ K+E+ K+ + +
Sbjct: 54 LDDLKQLIQDALNKHELSAPPPPKAPSPSTEAKKDEVAAAATEEKVEEEEEKKTEEEKKP 233
Query: 90 VEEENE 95
EEE +
Sbjct: 234 AEEEKK 251
>AV421731
Length = 308
Score = 26.9 bits (58), Expect = 1.8
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Frame = -3
Query: 63 IDSAVTK----SSDNKIEKPSRK------RKDGNEDDVEEENEYDHENDG 102
++SAV + ++E PS R DG E EE + DHE+DG
Sbjct: 291 VESAVAPVAAADGEREVESPSYPTLRALARVDGEEAQHEEHDYQDHEDDG 142
>TC8653 similar to UP|AAS46232 (AAS46232) Methionine sulfoxide reductase A,
partial (71%)
Length = 1175
Score = 26.6 bits (57), Expect = 2.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 69 KSSDNKIEKPSRKRKDGNEDDVEEENEYDHENDG 102
KSS N +K KRK+G + V+EE + E++G
Sbjct: 228 KSSSNTRQKIEWKRKNGKD*MVDEEE*DEDESEG 127
>BP047608
Length = 565
Score = 26.6 bits (57), Expect = 2.3
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = -1
Query: 117 LHHKFVVAVNQFGVEKARPK-----KILNLMNIENLT---KEHVASHLQVFFFI 162
LHH F++ G +K RPK NLM++E T + +V +HL++ F+
Sbjct: 289 LHHSFLLLRIPNGSKKLRPKHRRPGSENNLMSLEAFTLNLENYVTAHLRLEQFL 128
>TC10075 similar to UP|SPOP_HUMAN (O43791) Speckle-type POZ protein, partial
(5%)
Length = 1051
Score = 26.6 bits (57), Expect = 2.3
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = -2
Query: 117 LHHKFVVAVNQFGVEKARPK-----KILNLMNIENLT---KEHVASHLQVFFFI 162
LHH F++ G +K RPK NLM++E T + +V +HL++ F+
Sbjct: 906 LHHSFLLLRIPNGSKKLRPKHRRPGSENNLMSLEAFTLNLENYVTAHLRLEQFL 745
>TC11105 weakly similar to GB|AAM61217.1|21536885|AY084654 anthranilate
N-hydroxycinnamoyl/benzoyltransferase-like protein
{Arabidopsis thaliana;}, partial (11%)
Length = 575
Score = 26.2 bits (56), Expect = 3.0
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +1
Query: 12 VMKAIDVGACDYLLKPVQLKEVKMIWQHV 40
V KAI+V + LK + L E+K IWQ V
Sbjct: 484 VFKAIEV*SLSV*LKCIMLCEMKPIWQDV 570
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,640,620
Number of Sequences: 28460
Number of extensions: 31243
Number of successful extensions: 189
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of query: 167
length of database: 4,897,600
effective HSP length: 84
effective length of query: 83
effective length of database: 2,506,960
effective search space: 208077680
effective search space used: 208077680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC137602.16