Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137602.16 - phase: 0 /partial
         (167 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW719680                                                               82  4e-17
AV417025                                                               63  2e-11
CB829657                                                               58  7e-10
TC12349 similar to UP|Q9SJW0 (Q9SJW0) Transfactor-like protein, ...    58  9e-10
TC19936 homologue to UP|Q9SAK5 (Q9SAK5) T8K14.15 protein, partia...    54  1e-08
CB829663                                                               53  3e-08
TC8118 similar to GB|AAN28771.1|23505823|AY143832 At3g11200/F11B...    31  0.12
BP043430                                                               30  0.28
TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like pro...    30  0.28
TC8119 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding protei...    30  0.28
BP054131                                                               28  0.80
CB829198                                                               28  1.0
CB827384                                                               27  1.4
TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-ric...    27  1.8
AV408295                                                               27  1.8
AV421731                                                               27  1.8
TC8653 similar to UP|AAS46232 (AAS46232) Methionine sulfoxide re...    27  2.3
BP047608                                                               27  2.3
TC10075 similar to UP|SPOP_HUMAN (O43791) Speckle-type POZ prote...    27  2.3
TC11105 weakly similar to GB|AAM61217.1|21536885|AY084654 anthra...    26  3.0

>AW719680 
          Length = 525

 Score = 82.4 bits (202), Expect = 4e-17
 Identities = 44/96 (45%), Positives = 63/96 (64%)
 Frame = +1

Query: 64  DSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHENDGPTMPKKPRFKWSRDLHHKFVV 123
           D+  + S++    + S+KR+D       +E E D  +D  T+ KKPR  WS +LH +FV 
Sbjct: 40  DADYSSSANEGSWRNSKKRRD-------DEEEGDERDDSSTL-KKPRVVWSVELHQQFVA 195

Query: 124 AVNQFGVEKARPKKILNLMNIENLTKEHVASHLQVF 159
           AV+Q G++KA PKKIL LMN+  LT+E+VASHLQ +
Sbjct: 196 AVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKY 303


>AV417025 
          Length = 424

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
 Frame = +1

Query: 73  NKIEKPSRKRKDGNEDDVEEE---NEYDHE------NDGPTMPKKPRFKWSRDLHHKFVV 123
           +++ KPS +   GN+     +   +  +H       +   + P KPR +W+ +LH  FV 
Sbjct: 85  DRVSKPSSQYPVGNQSQAIPQLPASSGEHHAVTAPSSSANSAPAKPRMRWTPELHEAFVE 264

Query: 124 AVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQVF 159
           AVNQ  G E+A PK +L LM +E LT  HV SHLQ +
Sbjct: 265 AVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKY 375


>CB829657 
          Length = 518

 Score = 58.2 bits (139), Expect = 7e-10
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
 Frame = +2

Query: 100 NDGPTMPKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQV 158
           ++G  +  K R +W++DLH KFV  VN+  G +KA PK IL +M+ + LT  H+ SHLQ 
Sbjct: 53  SNGSVILSKTRIRWTKDLHEKFVECVNRLGGADKATPKAILKMMDSDGLTIYHIKSHLQK 232

Query: 159 F 159
           +
Sbjct: 233 Y 235


>TC12349 similar to UP|Q9SJW0 (Q9SJW0) Transfactor-like protein, partial
           (48%)
          Length = 582

 Score = 57.8 bits (138), Expect = 9e-10
 Identities = 29/71 (40%), Positives = 41/71 (56%), Gaps = 1/71 (1%)
 Frame = +3

Query: 98  HENDGPTMPKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHL 156
           +E + P    K R +W+ +LH +FV AV Q  G ++A PK +L +M +E LT  HV SHL
Sbjct: 150 NEPNNPNFASKQRLRWTHELHGRFVDAVAQLGGPDRATPKGVLRVMGVEGLTIYHVKSHL 329

Query: 157 QVFFFISYALD 167
           Q +    Y  D
Sbjct: 330 QKYRLAKYIHD 362


>TC19936 homologue to UP|Q9SAK5 (Q9SAK5) T8K14.15 protein, partial (23%)
          Length = 444

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +3

Query: 104 TMPKKPRFKWSRDLHHKFVVAVNQF-GVEKARPKKILNLMNIENLTKEHVASHLQ 157
           T   KPR +W+ +LH +FV AV Q  G +KA PK I+ +M ++ LT  H+ SHLQ
Sbjct: 222 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 386


>CB829663 
          Length = 485

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
 Frame = +2

Query: 108 KPRFKWSRDLHHKFVVAVNQFG-VEKARPKKILNLMNIENLTKEHVASHLQ 157
           K R +WS+DLH  F++ VN  G  EKA+PK IL +M  + L+  H+ SHLQ
Sbjct: 119 KRRIRWSKDLHEPFMMIVNSLGGPEKAKPKAILEMMKSDLLSISHIKSHLQ 271


>TC8118 similar to GB|AAN28771.1|23505823|AY143832 At3g11200/F11B9.12
           {Arabidopsis thaliana;}, partial (89%)
          Length = 1177

 Score = 30.8 bits (68), Expect = 0.12
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +2

Query: 46  TSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENE 95
           T ++   D P +DSG+    +  +SSD +++   +  ++G E++ +E +E
Sbjct: 566 TDRKPAKDKPATDSGSKSRGSTKRSSDGQVKSNPKFAEEGYEEEDDEHSE 715


>BP043430 
          Length = 493

 Score = 29.6 bits (65), Expect = 0.28
 Identities = 16/54 (29%), Positives = 30/54 (54%)
 Frame = -1

Query: 48  KRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHEND 101
           K S DD  N  SG   D    + +DN++++   + +D N+DD   E+E  ++++
Sbjct: 391 KASGDD--NEGSGKDNDD---EGNDNEVDEEDEEEEDSNDDDDGSESEEFNDDE 245


>TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like protein III,
           complete
          Length = 2302

 Score = 29.6 bits (65), Expect = 0.28
 Identities = 13/40 (32%), Positives = 24/40 (59%), Gaps = 4/40 (10%)
 Frame = -1

Query: 33  VKMIWQHVIRKKKTSKRSND----DVPNSDSGNGIDSAVT 68
           +K +W+ ++  +  +KR N     ++P+   GNG D+AVT
Sbjct: 394 IKCLWKQLVHDQGLAKRINSLKLLNIPDILDGNGADAAVT 275


>TC8119 similar to UP|Q9FFF5 (Q9FFF5) Nucleic acid binding protein-like,
           partial (85%)
          Length = 1249

 Score = 29.6 bits (65), Expect = 0.28
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 46  TSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKD-GNEDDVEEENE 95
           T ++   D P  DSG+       +SSD +++  + K  D G E+D +E +E
Sbjct: 643 TERKPIKDKPTVDSGSKSRGGTKRSSDGQVKSSNPKFADEGYEEDEDEHSE 795


>BP054131 
          Length = 500

 Score = 28.1 bits (61), Expect = 0.80
 Identities = 15/58 (25%), Positives = 30/58 (50%)
 Frame = -2

Query: 42  RKKKTSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHE 99
           R+K++  +   D+  S  G  + +   K  +   +  S+ + D +ED+VEE+ E D +
Sbjct: 379 RRKESMDKLRMDMEKSGGGTVVLNTGLKDQE---KAKSKSKMDEDEDEVEEDEEMDDD 215


>CB829198 
          Length = 562

 Score = 27.7 bits (60), Expect = 1.0
 Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
 Frame = +3

Query: 51  NDDVP---NSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDDVEEENEYDHE 99
           NDDV    +SDS    +    +  DN+  KP R +    + + E  N+ D+E
Sbjct: 267 NDDVEESQHSDSKEETEEEEDEDGDNENNKPKRAKAAKKKKNKERSNKSDNE 422


>CB827384 
          Length = 548

 Score = 27.3 bits (59), Expect = 1.4
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 1   LVFLKNDDLKLVMKAIDVGACDYLLKPVQLKEVKMI 36
           +V    + L  + + ++ GA D+LLKPV+L +V+ +
Sbjct: 392 VVMSSENILTRIDRCLEEGAEDFLLKPVKLSDVRRL 499


>TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein,
           partial (30%)
          Length = 539

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 69  KSSDNKIEKPS-RKRKDGNEDDVEEENEYDHENDGPTMPKKPR 110
           +  +  +E+ S R+R D  E+D EEE E + E +     ++PR
Sbjct: 244 EEEEKDLERESERERDDEREEDGEEEREEEPETEPDGGERRPR 116


>AV408295 
          Length = 426

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 13/66 (19%), Positives = 29/66 (43%)
 Frame = +3

Query: 30  LKEVKMIWQHVIRKKKTSKRSNDDVPNSDSGNGIDSAVTKSSDNKIEKPSRKRKDGNEDD 89
           L ++K + Q  + K + S       P+  +    D     +++ K+E+   K+ +  +  
Sbjct: 54  LDDLKQLIQDALNKHELSAPPPPKAPSPSTEAKKDEVAAAATEEKVEEEEEKKTEEEKKP 233

Query: 90  VEEENE 95
            EEE +
Sbjct: 234 AEEEKK 251


>AV421731 
          Length = 308

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
 Frame = -3

Query: 63  IDSAVTK----SSDNKIEKPSRK------RKDGNEDDVEEENEYDHENDG 102
           ++SAV        + ++E PS        R DG E   EE +  DHE+DG
Sbjct: 291 VESAVAPVAAADGEREVESPSYPTLRALARVDGEEAQHEEHDYQDHEDDG 142


>TC8653 similar to UP|AAS46232 (AAS46232) Methionine sulfoxide reductase A,
           partial (71%)
          Length = 1175

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 69  KSSDNKIEKPSRKRKDGNEDDVEEENEYDHENDG 102
           KSS N  +K   KRK+G +  V+EE   + E++G
Sbjct: 228 KSSSNTRQKIEWKRKNGKD*MVDEEE*DEDESEG 127


>BP047608 
          Length = 565

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
 Frame = -1

Query: 117 LHHKFVVAVNQFGVEKARPK-----KILNLMNIENLT---KEHVASHLQVFFFI 162
           LHH F++     G +K RPK        NLM++E  T   + +V +HL++  F+
Sbjct: 289 LHHSFLLLRIPNGSKKLRPKHRRPGSENNLMSLEAFTLNLENYVTAHLRLEQFL 128


>TC10075 similar to UP|SPOP_HUMAN (O43791) Speckle-type POZ protein, partial
           (5%)
          Length = 1051

 Score = 26.6 bits (57), Expect = 2.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
 Frame = -2

Query: 117 LHHKFVVAVNQFGVEKARPK-----KILNLMNIENLT---KEHVASHLQVFFFI 162
           LHH F++     G +K RPK        NLM++E  T   + +V +HL++  F+
Sbjct: 906 LHHSFLLLRIPNGSKKLRPKHRRPGSENNLMSLEAFTLNLENYVTAHLRLEQFL 745


>TC11105 weakly similar to GB|AAM61217.1|21536885|AY084654 anthranilate
           N-hydroxycinnamoyl/benzoyltransferase-like protein
           {Arabidopsis thaliana;}, partial (11%)
          Length = 575

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 14/29 (48%), Positives = 18/29 (61%)
 Frame = +1

Query: 12  VMKAIDVGACDYLLKPVQLKEVKMIWQHV 40
           V KAI+V +    LK + L E+K IWQ V
Sbjct: 484 VFKAIEV*SLSV*LKCIMLCEMKPIWQDV 570


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,640,620
Number of Sequences: 28460
Number of extensions: 31243
Number of successful extensions: 189
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of query: 167
length of database: 4,897,600
effective HSP length: 84
effective length of query: 83
effective length of database: 2,506,960
effective search space: 208077680
effective search space used: 208077680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)


Medicago: description of AC137602.16