TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137553.4 - phase: 0 /pseudo
         (921 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AU089582                                                               44  1e-04
AV421966                                                               31  0.78
TC15105 similar to UP|Q9FPW6 (Q9FPW6) POZ/BTB containing-protein...    30  1.7
CB829147                                                               28  8.6

>AU089582 
          Length = 383

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 23/64 (35%), Positives = 36/64 (55%)
 Frame = +1

Query: 625 DCEVAWYSFEHCIK*RPEIYF*ILEKFARGFRYQVEVEFGVSSADRWSVGEDDSVVRGFV 684
           DC +AW +  +  + R  I+   LE F+  F   ++ E+  SS++ WSV ED S +RG+ 
Sbjct: 43  DCFLAWCTCVYNFRSRSSIHITFLEVFSNCFGNSIKNEYRFSSSN*WSVREDYSDLRGYA 222

Query: 685 EDLC 688
             LC
Sbjct: 223 SCLC 234


>AV421966 
          Length = 469

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 20/59 (33%), Positives = 34/59 (56%)
 Frame = +2

Query: 512 EYSPGSYEDVSRSKEEILVVWIEARCGTVCVLLFDLLEVEN*ASETCWYDGVLRCARVE 570
           +Y  G Y+D+++ +EE++ + +    G   +L  D L+V   ASE   YD VL+ AR +
Sbjct: 200 QYLAGRYKDITKFQEEVMGLPLP---GIEAILSSDELQV---ASEDAVYDFVLKWARTQ 358


>TC15105 similar to UP|Q9FPW6 (Q9FPW6) POZ/BTB containing-protein AtPOB1,
           partial (31%)
          Length = 831

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +1

Query: 512 EYSPGSYEDVSRSKEEILVVWIEARCGTVCVLLFDLLEVEN*ASETCWYDGVLRCAR 568
           +Y  G Y+D+++ KEE++ + +    G   +L  D L V+   SE   YD VL+ AR
Sbjct: 487 QYLAGQYKDLTKFKEEVMALPLS---GIEVILASDHLRVK---SEDDVYDFVLKWAR 639


>CB829147 
          Length = 564

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 18/29 (61%), Gaps = 3/29 (10%)
 Frame = +3

Query: 611 QFSCCIVG---RGLY*RDCEVAWYSFEHC 636
           Q +CC+VG   +G Y  DC   W++F +C
Sbjct: 285 QNACCLVGEK*KG*Y--DCNATWHTFIYC 365


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.366    0.163    0.618 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,196,082
Number of Sequences: 28460
Number of extensions: 205965
Number of successful extensions: 2713
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 1610
length of query: 921
length of database: 4,897,600
effective HSP length: 99
effective length of query: 822
effective length of database: 2,080,060
effective search space: 1709809320
effective search space used: 1709809320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 60 (27.7 bits)