Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137553.12 + phase: 0 
         (535 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18883                                                                65  2e-11
BI418523                                                               59  2e-09
BP056414                                                               54  8e-08
AV428268                                                               53  1e-07
AV411435                                                               52  3e-07
BP036240                                                               46  2e-05
TC11605                                                                44  5e-05
TC13560                                                                44  7e-05
AV780221                                                               43  1e-04
AV412895                                                               43  1e-04
AV767121                                                               42  2e-04
BP080173                                                               40  0.001
AV780250                                                               39  0.002
AU089037                                                               39  0.002
BP041113                                                               37  0.006
BP028574                                                               37  0.008
BP056597                                                               37  0.010
TC10933 similar to UP|Q9LNS0 (Q9LNS0) F1L3.4, partial (6%)             36  0.014
BP060613                                                               36  0.018
AV418280                                                               35  0.023

>TC18883 
          Length = 821

 Score = 65.5 bits (158), Expect = 2e-11
 Identities = 39/107 (36%), Positives = 57/107 (52%), Gaps = 1/107 (0%)
 Frame = +1

Query: 395 GGIFRNCNSEMLICFGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVIRAF 454
           GGIFRN ++E+L  F ++ G G +  AE+     A+ + ++ Q  NL +E DS L +   
Sbjct: 16  GGIFRNSDNEILGFFSKHVGEGFAFEAEVWAIFEALTICVNRQLRNLTIESDSSLAVGWV 195

Query: 455 KNQSIVPWHLRNRWMNCMLLTRNMNFIAT-HIFRERNVCADLLAFTG 500
            N+S  PW L N+     L    +N ++  HIFRE N   D LA  G
Sbjct: 196 NNRSXRPWKLLNKLNQIDLWVAEVNCLSVKHIFREANGEVDKLAKRG 336


>BI418523 
          Length = 496

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 34/111 (30%), Positives = 55/111 (48%), Gaps = 2/111 (1%)
 Frame = +1

Query: 358 LHPPRAPKIIEVIWQPPPLNWTKCNTDGSTSGSL--SSCGGIFRNCNSEMLICFGENTGI 415
           L PPR        W PP   + KCN DG++ G+   S  GG+FR+ N ++L  F  N+G 
Sbjct: 163 LKPPRCWS-----WSPPSAGFIKCNVDGASQGNPGPSGVGGVFRDANRKILGYFSLNSGN 327

Query: 416 GNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVIRAFKNQSIVPWHLRN 466
           G +  A++   + A+         N+ +E DS + +    +++  PW L N
Sbjct: 328 GWAYEAKVRSILNALVFIQKFLLKNILIESDSTVAVEWVMSKANRPWRLSN 480


>BP056414 
          Length = 606

 Score = 53.5 bits (127), Expect = 8e-08
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 6/139 (4%)
 Frame = -3

Query: 371 WQPPPLNWTKCNTDGSTSGSL-SSCGGIFRNCNSEMLICFGENTGI---GNSLHAELSGA 426
           W  PP  W K N DG+ SG L +SCGG+ R+        F  + G+     +   EL   
Sbjct: 562 WTRPPEGWFKVNVDGALSGDLQASCGGVVRDAAGSWSKGFARSLGVLRWHXAFFVELMAV 383

Query: 427 MRAIELAISHQWLNLWLEVDSELVIRAFKNQSIVPWHLRNR--WMNCMLLTRNMNFIATH 484
             A++  +S     + +E DS+ V+   +N +    H      W     ++ + + + T 
Sbjct: 382 QTAVDFIMSWDIPQVIIESDSQQVVELLQNFNASSPHQYGEIAWDIQQKISVHGSIVITS 203

Query: 485 IFRERNVCADLLAFTGHNL 503
             RE N  AD LA  G +L
Sbjct: 202 TPREANFLADYLAKVGLSL 146


>AV428268 
          Length = 429

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 22/69 (31%), Positives = 37/69 (52%)
 Frame = +3

Query: 190 NWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLE 249
           N  K +WS  +P +   L W+ ++N++ T  NL  +G  + ++C LC+   E+T HL   
Sbjct: 63  NIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVISNVCPLCSLDEESTDHLLFS 242

Query: 250 CSFALNLWS 258
           C     +WS
Sbjct: 243 CPIV*RIWS 269


>AV411435 
          Length = 426

 Score = 51.6 bits (122), Expect = 3e-07
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
 Frame = +3

Query: 161 DKLIWKHSNNGELTLQDAYK-FKKTNFPKVNWAKH-----------IWSPDIPPSKALLV 208
           D+L W    +GE +++  Y+  K T F   N A             IW   +P      +
Sbjct: 39  DRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRSFL 218

Query: 209 WRFMLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSI 268
           WR   N +P   NL  +       C +CN   E  +H  L C +   +W        C +
Sbjct: 219 WRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVW------FGCPL 380

Query: 269 NIQSKEDLWNICNGSW 284
           N    E +  +  G+W
Sbjct: 381 NFVVHE-VHGMLFGAW 425


>BP036240 
          Length = 567

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = -3

Query: 371 WQPPPLNWTKCNTDGSTSGS-LSSCGGIFRNCNSEMLICFGENTG---IGNSLHAELSGA 426
           W  P   WTK + DG+ S   L+SCGG+ R+     +  F  N G     N    ELS  
Sbjct: 562 WTAPDEGWTKFDVDGALSRDLLASCGGVLRDSRRHWIKGFCRNMGDLTYHNVFLVELSAI 383

Query: 427 MRAIELAISHQWLNLWLEVDSELVIRAFKNQSI 459
             A+E+A+S    ++ +E D+   I    ++++
Sbjct: 382 QSAVEIALSMDLQHVIVESDALEAIHLLSSENV 284


>TC11605 
          Length = 546

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 24/66 (36%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
 Frame = +3

Query: 370 IWQPPPLNWTKCNTDGSTSGS--LSSCGGIFRNCNSEMLICFGENTGIGNSLHAELSGAM 427
           +W PP  N  K N DGS  GS  +S  GGI RN  S +L  F +  G+  +  AE+   +
Sbjct: 345 VWCPPEANILKFNVDGSARGSPGISGAGGILRNAESAVLGRFSKPLGVLCAYQAEVKAIL 524

Query: 428 RAIELA 433
            A++ +
Sbjct: 525 LALKFS 542


>TC13560 
          Length = 571

 Score = 43.9 bits (102), Expect = 7e-05
 Identities = 29/85 (34%), Positives = 40/85 (46%), Gaps = 4/85 (4%)
 Frame = +2

Query: 371 WQPPPLNWTKCNTDGSTSGSL-SSCGGIFRNCNSEMLICFGENTGIGNSLH---AELSGA 426
           W  P   W K N DG+ S  L +SC G+ RN +   L  F  N G  +S +    EL   
Sbjct: 146 WIKPDAGWVKINVDGAVSNCLQASCRGVLRNADGSWLKGFRWNFGTFSSANVFLTELMAV 325

Query: 427 MRAIELAISHQWLNLWLEVDSELVI 451
             A+E A+S     + +E DS  V+
Sbjct: 326 KTAVEAAMSLDLARVIVESDSLEVV 400


>AV780221 
          Length = 461

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 32/108 (29%), Positives = 49/108 (44%), Gaps = 9/108 (8%)
 Frame = +3

Query: 4   VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEE-QWAQVLRSRVIRNSTCIHH 62
           V W  VC   DEGGLG+++L   N A   K  W + +  +  W +VL   +I+    I  
Sbjct: 153 VKWSTVCRPKDEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVL---LIKYKNAIPQ 323

Query: 63  HVYSSIWSGA-KTEFQNLIDNSNWL-------VGDGDTINCWLDNWCG 102
              SS W+    T F++      W+       +G+G  +  W +NW G
Sbjct: 324 SA-SSWWNDLHSTCFED--GGGGWMQRGLCRRIGEGTEVKFWNENWLG 458


>AV412895 
          Length = 405

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 3/66 (4%)
 Frame = +1

Query: 195 IWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGC---NLPSMCSLCNNMSETTHHLFLECS 251
           IW    P +    VWR +L ++ T DNL+ +      L ++C LC    E+  HL   C+
Sbjct: 82  IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGSHLLFSCA 261

Query: 252 FALNLW 257
            ++ +W
Sbjct: 262 ESMLIW 279


>AV767121 
          Length = 525

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 32/111 (28%), Positives = 47/111 (41%), Gaps = 8/111 (7%)
 Frame = +2

Query: 4   VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWD-LFQSEEQWAQVLRSRVIRNSTCIHH 62
           V W  VC   + GGLGI+ L   N A   K  W  L + +  W +V+ ++        H+
Sbjct: 191 VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQP------DHY 352

Query: 63  HVYSSIWSGAKTEFQNLIDNSNW-------LVGDGDTINCWLDNWCGETLV 106
              SS W+   +      D   W       LVG+GD    W ++W G  L+
Sbjct: 353 SCGSSWWNDILSLCPE--DADGWFSSGLKKLVGEGDQTKFWSEDWLGSGLL 499


>BP080173 
          Length = 382

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 29/102 (28%), Positives = 43/102 (41%), Gaps = 2/102 (1%)
 Frame = -2

Query: 362 RAPKIIEVIWQPPPLNWTKCNTDGS--TSGSLSSCGGIFRNCNSEMLICFGENTGIGNSL 419
           RA     V W  P   W K N DGS   S + ++CGG+  +     +       G     
Sbjct: 372 RASGTTFVRWPVPMEGWIKINIDGSFAPSSNCAACGGVMWDHEGTFITGASVRLGCYFIN 193

Query: 420 HAELSGAMRAIELAISHQWLNLWLEVDSELVIRAFKNQSIVP 461
           HAEL G     ++A +  +  + +E DS  V+ +  NQ   P
Sbjct: 192 HAELWGIFHGAKIAQARGFKKILVESDSSFVV-SLVNQGCSP 70


>AV780250 
          Length = 494

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 29/109 (26%), Positives = 44/109 (39%), Gaps = 8/109 (7%)
 Frame = +3

Query: 161 DKLIWKHSNNGELTLQDAYKFKKTN----FPKVNWAKHI----WSPDIPPSKALLVWRFM 212
           D L W H++NGE T +  Y   +       P  + A  +    W     P    L+ R  
Sbjct: 174 DVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPVVWKAPTLPRCRELIGRAF 353

Query: 213 LNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFA 261
           L  LPT   L  +G ++  +C  C    E+   + L     ++ W WFA
Sbjct: 354 LKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVP-VVSKW-WFA 494


>AU089037 
          Length = 245

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 17/70 (24%), Positives = 33/70 (46%), Gaps = 3/70 (4%)
 Frame = -1

Query: 187 PKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGC---NLPSMCSLCNNMSETT 243
           P  +  + +W    P +     WR +L+++ T  NL  +     +  ++C +C+   E++
Sbjct: 215 PSSDIFQKLWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESS 36

Query: 244 HHLFLECSFA 253
            HLF  C  A
Sbjct: 35  SHLFFSCPLA 6


>BP041113 
          Length = 503

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 28/94 (29%), Positives = 43/94 (44%), Gaps = 6/94 (6%)
 Frame = +1

Query: 159 IRDKLIWKHSNNGELTLQDAYKFKKTNFPKVNWAKHIWSP---DIPPSKALLVWRFMLNK 215
           + DK +W     G  T+  AY F +   P +     I++     + PS     WR +L +
Sbjct: 223 VEDKWLWLPG--GTYTVNSAYSFLQA--PTLADTDPIFATIWRTVAPSVKAFAWRCLLGR 390

Query: 216 LPTDDNLMNKGCNL-PSM--CSLCNNMSETTHHL 246
           LPT DNL+ +   + P+M  C  C    E+  HL
Sbjct: 391 LPTYDNLIKRQVVVDPAMTVCKFCQGEVESVTHL 492


>BP028574 
          Length = 454

 Score = 37.0 bits (84), Expect = 0.008
 Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 2/60 (3%)
 Frame = +3

Query: 160 RDKLIWKHSNNGELTLQDAYKFKKTNFPKV--NWAKHIWSPDIPPSKALLVWRFMLNKLP 217
           RD  +W    +G  T++ AY+       ++  N+ + +W    P +   L WR  LN++P
Sbjct: 258 RDSWVWIKDGSGSFTVKSAYEELHGEIQEIEDNFFRKLWQSKAPSNSIALAWRVGLNRVP 437


>BP056597 
          Length = 414

 Score = 36.6 bits (83), Expect = 0.010
 Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
 Frame = +3

Query: 103 ETLVDLFDIDSQQLNMLPKKLRNYMQN-----FNWCFP---DDILSLFPDMRLLASKVTI 154
           ET   LF I +QQ N    ++ ++++N     F+W  P   +D+L L    ++++S   I
Sbjct: 3   ETFDSLFLISNQQ-NCKIVEMGHWLENKWVWDFSWKNPISGEDVLKLGVMKQIVSSFSLI 179

Query: 155 PKHCIRDKLIWKHSNNGELTLQDAYKFKKTNFPKVNWA--KHIWSPDIPPSKALLVWRFM 212
                +D  +W    +G+ +++ AY         +  +    +W    P +   L WR  
Sbjct: 180 NGK--KDTWVWILEGDGQYSVKSAYDLLSGLDTTIGISVFSKLWKACAPSNAVALGWRVF 353

Query: 213 LNKLPTDDNLMNK 225
           L+++ T DNL  +
Sbjct: 354 LDRIQTKDNLSRR 392


>TC10933 similar to UP|Q9LNS0 (Q9LNS0) F1L3.4, partial (6%)
          Length = 596

 Score = 36.2 bits (82), Expect = 0.014
 Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 2/29 (6%)
 Frame = +2

Query: 371 WQPPPLNWTKCNTDGS--TSGSLSSCGGI 397
           W PP + W K NTDGS     SL  CGG+
Sbjct: 107 WTPPSVGWVKLNTDGSFTRGSSLMGCGGL 193


>BP060613 
          Length = 378

 Score = 35.8 bits (81), Expect = 0.018
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
 Frame = +1

Query: 6   WKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIHHHV 64
           W  +    DEGGLG +     N A   K  W +  + +  W Q+L+      +    HH 
Sbjct: 88  WDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILK------ALYFPHHD 249

Query: 65  Y---------SSIWSGAKTEFQNLIDNSNWLVGDGDTI 93
           +         S +WS      + L+    W +G G+T+
Sbjct: 250 FLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETV 363


>AV418280 
          Length = 398

 Score = 35.4 bits (80), Expect = 0.023
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = -2

Query: 233 CSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDLWNICNGSWNPQCKTVI 292
           C  C  + E + HLF  C F++ +W      L  S+ + +   L N    S   + K   
Sbjct: 388 CPFCTTVEECSGHLFFTCVFSMGVWQALHRWLGISVALPA-STLANFAQFSITARNKNQR 212

Query: 293 IASL---INIINSIWYARNQRRFQN 314
           +  L   I  + S+W  RN   F+N
Sbjct: 211 LGELAIWIATVWSLWIQRNSIIFRN 137


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.136    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,519,531
Number of Sequences: 28460
Number of extensions: 244088
Number of successful extensions: 1758
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of query: 535
length of database: 4,897,600
effective HSP length: 95
effective length of query: 440
effective length of database: 2,193,900
effective search space: 965316000
effective search space used: 965316000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)


Medicago: description of AC137553.12