
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137553.12 + phase: 0
(535 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18883 65 2e-11
BI418523 59 2e-09
BP056414 54 8e-08
AV428268 53 1e-07
AV411435 52 3e-07
BP036240 46 2e-05
TC11605 44 5e-05
TC13560 44 7e-05
AV780221 43 1e-04
AV412895 43 1e-04
AV767121 42 2e-04
BP080173 40 0.001
AV780250 39 0.002
AU089037 39 0.002
BP041113 37 0.006
BP028574 37 0.008
BP056597 37 0.010
TC10933 similar to UP|Q9LNS0 (Q9LNS0) F1L3.4, partial (6%) 36 0.014
BP060613 36 0.018
AV418280 35 0.023
>TC18883
Length = 821
Score = 65.5 bits (158), Expect = 2e-11
Identities = 39/107 (36%), Positives = 57/107 (52%), Gaps = 1/107 (0%)
Frame = +1
Query: 395 GGIFRNCNSEMLICFGENTGIGNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVIRAF 454
GGIFRN ++E+L F ++ G G + AE+ A+ + ++ Q NL +E DS L +
Sbjct: 16 GGIFRNSDNEILGFFSKHVGEGFAFEAEVWAIFEALTICVNRQLRNLTIESDSSLAVGWV 195
Query: 455 KNQSIVPWHLRNRWMNCMLLTRNMNFIAT-HIFRERNVCADLLAFTG 500
N+S PW L N+ L +N ++ HIFRE N D LA G
Sbjct: 196 NNRSXRPWKLLNKLNQIDLWVAEVNCLSVKHIFREANGEVDKLAKRG 336
>BI418523
Length = 496
Score = 59.3 bits (142), Expect = 2e-09
Identities = 34/111 (30%), Positives = 55/111 (48%), Gaps = 2/111 (1%)
Frame = +1
Query: 358 LHPPRAPKIIEVIWQPPPLNWTKCNTDGSTSGSL--SSCGGIFRNCNSEMLICFGENTGI 415
L PPR W PP + KCN DG++ G+ S GG+FR+ N ++L F N+G
Sbjct: 163 LKPPRCWS-----WSPPSAGFIKCNVDGASQGNPGPSGVGGVFRDANRKILGYFSLNSGN 327
Query: 416 GNSLHAELSGAMRAIELAISHQWLNLWLEVDSELVIRAFKNQSIVPWHLRN 466
G + A++ + A+ N+ +E DS + + +++ PW L N
Sbjct: 328 GWAYEAKVRSILNALVFIQKFLLKNILIESDSTVAVEWVMSKANRPWRLSN 480
>BP056414
Length = 606
Score = 53.5 bits (127), Expect = 8e-08
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 6/139 (4%)
Frame = -3
Query: 371 WQPPPLNWTKCNTDGSTSGSL-SSCGGIFRNCNSEMLICFGENTGI---GNSLHAELSGA 426
W PP W K N DG+ SG L +SCGG+ R+ F + G+ + EL
Sbjct: 562 WTRPPEGWFKVNVDGALSGDLQASCGGVVRDAAGSWSKGFARSLGVLRWHXAFFVELMAV 383
Query: 427 MRAIELAISHQWLNLWLEVDSELVIRAFKNQSIVPWHLRNR--WMNCMLLTRNMNFIATH 484
A++ +S + +E DS+ V+ +N + H W ++ + + + T
Sbjct: 382 QTAVDFIMSWDIPQVIIESDSQQVVELLQNFNASSPHQYGEIAWDIQQKISVHGSIVITS 203
Query: 485 IFRERNVCADLLAFTGHNL 503
RE N AD LA G +L
Sbjct: 202 TPREANFLADYLAKVGLSL 146
>AV428268
Length = 429
Score = 52.8 bits (125), Expect = 1e-07
Identities = 22/69 (31%), Positives = 37/69 (52%)
Frame = +3
Query: 190 NWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLE 249
N K +WS +P + L W+ ++N++ T NL +G + ++C LC+ E+T HL
Sbjct: 63 NIFKLLWSVKVPSNAIALSWKVLINRVQTKVNLNRRGVVISNVCPLCSLDEESTDHLLFS 242
Query: 250 CSFALNLWS 258
C +WS
Sbjct: 243 CPIV*RIWS 269
>AV411435
Length = 426
Score = 51.6 bits (122), Expect = 3e-07
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
Frame = +3
Query: 161 DKLIWKHSNNGELTLQDAYK-FKKTNFPKVNWAKH-----------IWSPDIPPSKALLV 208
D+L W +GE +++ Y+ K T F N A IW +P +
Sbjct: 39 DRLFWPFIPSGEYSVKSGYRAVKATQFNLSNLASSSSHPSSFLWHTIWGAQVPKKVRSFL 218
Query: 209 WRFMLNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSI 268
WR N +P NL + C +CN E +H L C + +W C +
Sbjct: 219 WRAANNAIPVKRNLKRRNMGRDDFCPICNKGPEDINHALLACEWTRAVW------FGCPL 380
Query: 269 NIQSKEDLWNICNGSW 284
N E + + G+W
Sbjct: 381 NFVVHE-VHGMLFGAW 425
>BP036240
Length = 567
Score = 45.8 bits (107), Expect = 2e-05
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = -3
Query: 371 WQPPPLNWTKCNTDGSTSGS-LSSCGGIFRNCNSEMLICFGENTG---IGNSLHAELSGA 426
W P WTK + DG+ S L+SCGG+ R+ + F N G N ELS
Sbjct: 562 WTAPDEGWTKFDVDGALSRDLLASCGGVLRDSRRHWIKGFCRNMGDLTYHNVFLVELSAI 383
Query: 427 MRAIELAISHQWLNLWLEVDSELVIRAFKNQSI 459
A+E+A+S ++ +E D+ I ++++
Sbjct: 382 QSAVEIALSMDLQHVIVESDALEAIHLLSSENV 284
>TC11605
Length = 546
Score = 44.3 bits (103), Expect = 5e-05
Identities = 24/66 (36%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
Frame = +3
Query: 370 IWQPPPLNWTKCNTDGSTSGS--LSSCGGIFRNCNSEMLICFGENTGIGNSLHAELSGAM 427
+W PP N K N DGS GS +S GGI RN S +L F + G+ + AE+ +
Sbjct: 345 VWCPPEANILKFNVDGSARGSPGISGAGGILRNAESAVLGRFSKPLGVLCAYQAEVKAIL 524
Query: 428 RAIELA 433
A++ +
Sbjct: 525 LALKFS 542
>TC13560
Length = 571
Score = 43.9 bits (102), Expect = 7e-05
Identities = 29/85 (34%), Positives = 40/85 (46%), Gaps = 4/85 (4%)
Frame = +2
Query: 371 WQPPPLNWTKCNTDGSTSGSL-SSCGGIFRNCNSEMLICFGENTGIGNSLH---AELSGA 426
W P W K N DG+ S L +SC G+ RN + L F N G +S + EL
Sbjct: 146 WIKPDAGWVKINVDGAVSNCLQASCRGVLRNADGSWLKGFRWNFGTFSSANVFLTELMAV 325
Query: 427 MRAIELAISHQWLNLWLEVDSELVI 451
A+E A+S + +E DS V+
Sbjct: 326 KTAVEAAMSLDLARVIVESDSLEVV 400
>AV780221
Length = 461
Score = 43.1 bits (100), Expect = 1e-04
Identities = 32/108 (29%), Positives = 49/108 (44%), Gaps = 9/108 (8%)
Frame = +3
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEE-QWAQVLRSRVIRNSTCIHH 62
V W VC DEGGLG+++L N A K W + + + W +VL +I+ I
Sbjct: 153 VKWSTVCRPKDEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVL---LIKYKNAIPQ 323
Query: 63 HVYSSIWSGA-KTEFQNLIDNSNWL-------VGDGDTINCWLDNWCG 102
SS W+ T F++ W+ +G+G + W +NW G
Sbjct: 324 SA-SSWWNDLHSTCFED--GGGGWMQRGLCRRIGEGTEVKFWNENWLG 458
>AV412895
Length = 405
Score = 42.7 bits (99), Expect = 1e-04
Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 3/66 (4%)
Frame = +1
Query: 195 IWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGC---NLPSMCSLCNNMSETTHHLFLECS 251
IW P + VWR +L ++ T DNL+ + L ++C LC E+ HL C+
Sbjct: 82 IWMVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGSHLLFSCA 261
Query: 252 FALNLW 257
++ +W
Sbjct: 262 ESMLIW 279
>AV767121
Length = 525
Score = 42.4 bits (98), Expect = 2e-04
Identities = 32/111 (28%), Positives = 47/111 (41%), Gaps = 8/111 (7%)
Frame = +2
Query: 4 VAWKKVCADYDEGGLGIRSLVCLNAASNMKICWD-LFQSEEQWAQVLRSRVIRNSTCIHH 62
V W VC + GGLGI+ L N A K W L + + W +V+ ++ H+
Sbjct: 191 VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSLWRRVIEAQP------DHY 352
Query: 63 HVYSSIWSGAKTEFQNLIDNSNW-------LVGDGDTINCWLDNWCGETLV 106
SS W+ + D W LVG+GD W ++W G L+
Sbjct: 353 SCGSSWWNDILSLCPE--DADGWFSSGLKKLVGEGDQTKFWSEDWLGSGLL 499
>BP080173
Length = 382
Score = 39.7 bits (91), Expect = 0.001
Identities = 29/102 (28%), Positives = 43/102 (41%), Gaps = 2/102 (1%)
Frame = -2
Query: 362 RAPKIIEVIWQPPPLNWTKCNTDGS--TSGSLSSCGGIFRNCNSEMLICFGENTGIGNSL 419
RA V W P W K N DGS S + ++CGG+ + + G
Sbjct: 372 RASGTTFVRWPVPMEGWIKINIDGSFAPSSNCAACGGVMWDHEGTFITGASVRLGCYFIN 193
Query: 420 HAELSGAMRAIELAISHQWLNLWLEVDSELVIRAFKNQSIVP 461
HAEL G ++A + + + +E DS V+ + NQ P
Sbjct: 192 HAELWGIFHGAKIAQARGFKKILVESDSSFVV-SLVNQGCSP 70
>AV780250
Length = 494
Score = 39.3 bits (90), Expect = 0.002
Identities = 29/109 (26%), Positives = 44/109 (39%), Gaps = 8/109 (7%)
Frame = +3
Query: 161 DKLIWKHSNNGELTLQDAYKFKKTN----FPKVNWAKHI----WSPDIPPSKALLVWRFM 212
D L W H++NGE T + Y + P + A + W P L+ R
Sbjct: 174 DVLAWPHTSNGEYTSKSGYAVVRNKVVHALPSSSTALQVSPVVWKAPTLPRCRELIGRAF 353
Query: 213 LNKLPTDDNLMNKGCNLPSMCSLCNNMSETTHHLFLECSFALNLWSWFA 261
L LPT L +G ++ +C C E+ + L ++ W WFA
Sbjct: 354 LKILPTRSALRARGMDVDELCPSCETHRESPAQVLLFVP-VVSKW-WFA 494
>AU089037
Length = 245
Score = 38.9 bits (89), Expect = 0.002
Identities = 17/70 (24%), Positives = 33/70 (46%), Gaps = 3/70 (4%)
Frame = -1
Query: 187 PKVNWAKHIWSPDIPPSKALLVWRFMLNKLPTDDNLMNKGC---NLPSMCSLCNNMSETT 243
P + + +W P + WR +L+++ T NL + + ++C +C+ E++
Sbjct: 215 PSSDIFQKLWKVPAPSNAVSFAWRLILDRVQTRGNLRRRQVIQQSEEALCPMCSQCEESS 36
Query: 244 HHLFLECSFA 253
HLF C A
Sbjct: 35 SHLFFSCPLA 6
>BP041113
Length = 503
Score = 37.4 bits (85), Expect = 0.006
Identities = 28/94 (29%), Positives = 43/94 (44%), Gaps = 6/94 (6%)
Frame = +1
Query: 159 IRDKLIWKHSNNGELTLQDAYKFKKTNFPKVNWAKHIWSP---DIPPSKALLVWRFMLNK 215
+ DK +W G T+ AY F + P + I++ + PS WR +L +
Sbjct: 223 VEDKWLWLPG--GTYTVNSAYSFLQA--PTLADTDPIFATIWRTVAPSVKAFAWRCLLGR 390
Query: 216 LPTDDNLMNKGCNL-PSM--CSLCNNMSETTHHL 246
LPT DNL+ + + P+M C C E+ HL
Sbjct: 391 LPTYDNLIKRQVVVDPAMTVCKFCQGEVESVTHL 492
>BP028574
Length = 454
Score = 37.0 bits (84), Expect = 0.008
Identities = 16/60 (26%), Positives = 29/60 (47%), Gaps = 2/60 (3%)
Frame = +3
Query: 160 RDKLIWKHSNNGELTLQDAYKFKKTNFPKV--NWAKHIWSPDIPPSKALLVWRFMLNKLP 217
RD +W +G T++ AY+ ++ N+ + +W P + L WR LN++P
Sbjct: 258 RDSWVWIKDGSGSFTVKSAYEELHGEIQEIEDNFFRKLWQSKAPSNSIALAWRVGLNRVP 437
>BP056597
Length = 414
Score = 36.6 bits (83), Expect = 0.010
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Frame = +3
Query: 103 ETLVDLFDIDSQQLNMLPKKLRNYMQN-----FNWCFP---DDILSLFPDMRLLASKVTI 154
ET LF I +QQ N ++ ++++N F+W P +D+L L ++++S I
Sbjct: 3 ETFDSLFLISNQQ-NCKIVEMGHWLENKWVWDFSWKNPISGEDVLKLGVMKQIVSSFSLI 179
Query: 155 PKHCIRDKLIWKHSNNGELTLQDAYKFKKTNFPKVNWA--KHIWSPDIPPSKALLVWRFM 212
+D +W +G+ +++ AY + + +W P + L WR
Sbjct: 180 NGK--KDTWVWILEGDGQYSVKSAYDLLSGLDTTIGISVFSKLWKACAPSNAVALGWRVF 353
Query: 213 LNKLPTDDNLMNK 225
L+++ T DNL +
Sbjct: 354 LDRIQTKDNLSRR 392
>TC10933 similar to UP|Q9LNS0 (Q9LNS0) F1L3.4, partial (6%)
Length = 596
Score = 36.2 bits (82), Expect = 0.014
Identities = 15/29 (51%), Positives = 17/29 (57%), Gaps = 2/29 (6%)
Frame = +2
Query: 371 WQPPPLNWTKCNTDGS--TSGSLSSCGGI 397
W PP + W K NTDGS SL CGG+
Sbjct: 107 WTPPSVGWVKLNTDGSFTRGSSLMGCGGL 193
>BP060613
Length = 378
Score = 35.8 bits (81), Expect = 0.018
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Frame = +1
Query: 6 WKKVCADYDEGGLGIRSLVCLNAASNMKICWDLFQSEEQ-WAQVLRSRVIRNSTCIHHHV 64
W + DEGGLG + N A K W + + + W Q+L+ + HH
Sbjct: 88 WDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNPDALWVQILK------ALYFPHHD 249
Query: 65 Y---------SSIWSGAKTEFQNLIDNSNWLVGDGDTI 93
+ S +WS + L+ W +G G+T+
Sbjct: 250 FLQTTKRTGASWVWSSLLHGRELLLKQGQWQLGSGETV 363
>AV418280
Length = 398
Score = 35.4 bits (80), Expect = 0.023
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -2
Query: 233 CSLCNNMSETTHHLFLECSFALNLWSWFAGILNCSINIQSKEDLWNICNGSWNPQCKTVI 292
C C + E + HLF C F++ +W L S+ + + L N S + K
Sbjct: 388 CPFCTTVEECSGHLFFTCVFSMGVWQALHRWLGISVALPA-STLANFAQFSITARNKNQR 212
Query: 293 IASL---INIINSIWYARNQRRFQN 314
+ L I + S+W RN F+N
Sbjct: 211 LGELAIWIATVWSLWIQRNSIIFRN 137
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.136 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,519,531
Number of Sequences: 28460
Number of extensions: 244088
Number of successful extensions: 1758
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of query: 535
length of database: 4,897,600
effective HSP length: 95
effective length of query: 440
effective length of database: 2,193,900
effective search space: 965316000
effective search space used: 965316000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC137553.12