TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137546.8 + phase: 0 /pseudo
         (374 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                               109  6e-25
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...    87  4e-18
TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA po...    37  0.007
BP052318                                                               27  4.2
AV428268                                                               27  4.2
TC11618 homologue to AAQ62405 (AAQ62405) At5g09680, partial (10%)      27  5.5
BP052092                                                               27  7.2

>TC18710 
          Length = 843

 Score =  109 bits (273), Expect = 6e-25
 Identities = 64/192 (33%), Positives = 100/192 (51%), Gaps = 3/192 (1%)
 Frame = +2

Query: 185 GPDGVNFGFIKEFWIVLKDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRP 244
           G DG+N  F ++   V+KD +   +  F    ++   IN T + LI KV +P+ +N FRP
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367

Query: 245 ISLVGSMNKIIAKLLANRLRLVIGSVVSETQSAFVKKRQILDGILIANEV---VDEAFKL 301
           IS    + K+I+K+   RL+  +  ++S  QS F++ RQI D +LI  E    ++    L
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQEAFHAINRPGAL 547

Query: 302 KKDLMLFKVDFEKTYDSVDWGYLGEVLKCMSFPVLWRKWIRECVGTATASVLVNGSPTDE 361
            ++  + K+D  K YD V+W +L   L    F   W K I   V   + +  +NG    +
Sbjct: 548 GRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPK 727

Query: 362 FPLKRGLRQGDP 373
              +RGLRQGDP
Sbjct: 728 LLPQRGLRQGDP 763


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score = 87.0 bits (214), Expect = 4e-18
 Identities = 53/191 (27%), Positives = 102/191 (52%), Gaps = 3/191 (1%)
 Frame = -3

Query: 85  LREGDMNSKFFHSLMSSRRRFNTICSVL-VEDVRIEGVEPVRNAIFTHFAQHFMSHNV-- 141
           L+ GD N++FFH+    RR FN I  +     + +EG + V  A   +F+  + S  +  
Sbjct: 578 LK*GDHNTRFFHASTIQRRDFNRILKIKDAHGIWVEGQKKVNEAAVNYFSDIYSSSPLQY 399

Query: 142 VRPSVSNLQFQALSVTEGEGLIKPFSVDEVKEAICDYDSFKSSGPDGVNFGFIKEFWIVL 201
           +R  ++ +  + ++      L    S DE+KEA+      K+ G DG+N  F ++   ++
Sbjct: 398 LRECLAPIP-KLVTDRLNHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIV 222

Query: 202 KDDIMQFVSEFHRNGKLAKGINTTFIVLISKVDNPQRLNDFRPISLVGSMNKIIAKLLAN 261
           K+D+   + +F  +G+L   +N T + LI K+ + + +  FRPIS    + K+I+K++  
Sbjct: 221 KNDVNNAILDFFDHGELPVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVA 42

Query: 262 RLRLVIGSVVS 272
           RL+  + +++S
Sbjct: 41  RLKPDMVNLIS 9


>TC19704 weakly similar to UP|Q9SZ87 (Q9SZ87) RNA-directed DNA
           polymerase-like protein, partial (3%)
          Length = 530

 Score = 36.6 bits (83), Expect = 0.007
 Identities = 16/31 (51%), Positives = 20/31 (63%)
 Frame = -3

Query: 78  QQSRNHWLREGDMNSKFFHSLMSSRRRFNTI 108
           Q+SR  WL+ GD N+KFFH+    RR  N I
Sbjct: 252 QRSRIKWLKSGDKNTKFFHASTVQRRERNRI 160


>BP052318 
          Length = 460

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 37  KTVWRCWMGKGKWRTCQTL 55
           ++ WRCW G G+   C+ L
Sbjct: 389 RSSWRCWRGMGRGLACRAL 445


>AV428268 
          Length = 429

 Score = 27.3 bits (59), Expect = 4.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 233 VDNPQRLNDFRPISLVGSMNKIIAKL 258
           +D PQ+L +  P+S+  SM KII +L
Sbjct: 92  LDGPQQLKNVIPLSIGTSMKKIIGRL 15


>TC11618 homologue to AAQ62405 (AAQ62405) At5g09680, partial (10%)
          Length = 514

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (54%)
 Frame = +2

Query: 293 EVVDEAFKLKKDLMLFKVDFEKTYDSVDW 321
           E  ++    KK ++  KV FEK Y  +DW
Sbjct: 428 ESPEQMISAKKPIVRTKVPFEKGYSQMDW 514


>BP052092 
          Length = 564

 Score = 26.6 bits (57), Expect = 7.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 91  NSKFFHSLMSSRRRFNTICSVLVEDVRIE 119
           ++ FF SL   RRR+NTI S+ +++  ++
Sbjct: 72  SNDFFDSLQLRRRRYNTI*SLFLKESMVQ 158


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.333    0.145    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,497,951
Number of Sequences: 28460
Number of extensions: 93402
Number of successful extensions: 893
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of query: 374
length of database: 4,897,600
effective HSP length: 92
effective length of query: 282
effective length of database: 2,279,280
effective search space: 642756960
effective search space used: 642756960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 56 (26.2 bits)