BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137546.6 - phase: 0
(181 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19873 weakly similar to GB|AAP12859.1|30017251|BT006210 At3g16... 104 1e-23
AV413338 34 0.013
TC10635 similar to UP|Q946U8 (Q946U8) Long cell-linked locus pro... 30 0.24
TC19862 homologue to UP|Q8BMT8 (Q8BMT8) Protein disulfide isomer... 30 0.24
TC15256 homologue to UP|AX28_SOYBN (P13089) Auxin-induced protei... 28 0.92
TC15348 weakly similar to GB|AAA32913.1|166949|AVOCYP cytochrome... 28 0.92
TC11427 weakly similar to UP|Q9LTH7 (Q9LTH7) Leucoanthocyanidin ... 28 1.2
AI967809 27 2.0
BP062685 27 2.0
TC11052 weakly similar to UP|Q9AVM0 (Q9AVM0) Cytochrome P450, pa... 27 2.0
TC16835 27 2.7
AV766622 27 2.7
BI418377 26 3.5
TC10585 similar to UP|Q9ZP40 (Q9ZP40) Plastoglobule associated p... 26 3.5
TC17508 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H... 26 4.5
TC8197 UP|Q8S2Z7 (Q8S2Z7) GTP-binding protein, complete 25 5.9
TC18709 25 7.7
TC9324 weakly similar to UP|Q945L9 (Q945L9) AT5g11010/T30N20_280... 25 7.7
>TC19873 weakly similar to GB|AAP12859.1|30017251|BT006210 At3g16330
{Arabidopsis thaliana;}, partial (27%)
Length = 561
Score = 104 bits (259), Expect = 1e-23
Identities = 65/147 (44%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Frame = +3
Query: 1 MEIEARQGVVAKKLWNMVRVLLFIIRKGIAKSKTMVHLNLILKRGKL-AGKALINTLMLN 59
ME + Q VVAKK N++R++LF++++GIAKSK M+ L+L+LKRGKL A KA+ NTL L+
Sbjct: 90 MEPQTSQPVVAKKAQNIIRIILFMLKEGIAKSKLMLDLHLLLKRGKLAAAKAIANTLTLH 269
Query: 60 HQLYHSSFTCRSDNNSFISPCEYEFSCRNTPA---NPLRHSSRRFSKSRRQRHNDFSIMN 116
H H +S +SP +YEFSC N+PA ++ ++++ SRR H+ + ++
Sbjct: 270 HHRRH--------QHSSVSPQDYEFSCSNSPAIMFPIIKRHNKKYHHSRRHNHH-YEDIS 422
Query: 117 NNIAVQKVFIEMMLNNEKVEAVANSPL 143
AVQK+ +EM+ N++KVEA SPL
Sbjct: 423 TVHAVQKM-LEMLNNSDKVEA---SPL 491
>AV413338
Length = 229
Score = 34.3 bits (77), Expect = 0.013
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 2 EIEARQGVVAKKLWNMVRVLLFIIRKGI 29
E+E V K+LWN++R+ F+IRKG+
Sbjct: 138 EMEVHSQVADKRLWNVLRITFFMIRKGL 221
>TC10635 similar to UP|Q946U8 (Q946U8) Long cell-linked locus protein,
partial (16%)
Length = 1243
Score = 30.0 bits (66), Expect = 0.24
Identities = 48/184 (26%), Positives = 70/184 (37%), Gaps = 16/184 (8%)
Frame = +3
Query: 10 VAKKLWNMVRVLLFIIRKG-IAKSKTMVHLNLILKRGKLAGKALINTLMLNHQLYHSSFT 68
V ++ WN++R+ L RKG + + + L L+ K K G +T N Y+
Sbjct: 438 VGQRAWNLLRLSLLWARKGGVFRRRLATELRLVPKYLKRLG----HTTPQNQINYYF--- 596
Query: 69 CRSDNNSFISPCEYEFSCRNTP---ANPLRHSSRRFSKSRRQRHN-------DFSIMNNN 118
E E S TP R SS RF+ N DF N+N
Sbjct: 597 ------------ERELSFHKTPIFHVKMYRPSSMRFNLPHIPCINPHVDFDYDFEDDNDN 740
Query: 119 IAVQKVFIEMMLNNEK----VEAVANSPLAPFTLEDEGNCHQ-VDIAAEEFINNFYKELN 173
I N K V A + F+ ED+ Q +D A+EFI FY+++
Sbjct: 741 IVEYD-------NGRKSIVLVNAEDHGQDIAFSEEDQEEDEQGIDKQADEFIARFYQQMK 899
Query: 174 RQNR 177
Q +
Sbjct: 900 LQRQ 911
>TC19862 homologue to UP|Q8BMT8 (Q8BMT8) Protein disulfide isomerase A4
precursor, partial (3%)
Length = 425
Score = 30.0 bits (66), Expect = 0.24
Identities = 18/52 (34%), Positives = 25/52 (47%)
Frame = -1
Query: 56 LMLNHQLYHSSFTCRSDNNSFISPCEYEFSCRNTPANPLRHSSRRFSKSRRQ 107
L+L HQ+ S FT S+N + S C+ E SC+ +H F S Q
Sbjct: 377 LLLLHQILISIFTSLSENGRWKSNCDDEASCKK------QHYKELFKASNSQ 240
>TC15256 homologue to UP|AX28_SOYBN (P13089) Auxin-induced protein AUX28,
partial (51%)
Length = 664
Score = 28.1 bits (61), Expect = 0.92
Identities = 14/45 (31%), Positives = 27/45 (59%)
Frame = -2
Query: 102 SKSRRQRHNDFSIMNNNIAVQKVFIEMMLNNEKVEAVANSPLAPF 146
S RR+RH+ + +++ +Q+ F ++ ++ VAN PLAP+
Sbjct: 531 SSHRRRRHH-YCSSHHHSPLQRSFAQLTCSSGTTAQVANPPLAPW 400
>TC15348 weakly similar to GB|AAA32913.1|166949|AVOCYP cytochrome
P-450LXXIA1 (cyp71A1) {Persea americana;} , partial
(23%)
Length = 614
Score = 28.1 bits (61), Expect = 0.92
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 84 FSCRNTPANPLRHSSRRFSKSRRQRHNDFS---IMNNNIAV 121
F CR +P NP S R + N+FS +M++N+A+
Sbjct: 423 FLCRASPCNPSSSMSSRVIPGGVSQSNEFSRFAVMSSNVAI 301
>TC11427 weakly similar to UP|Q9LTH7 (Q9LTH7) Leucoanthocyanidin
dioxygenase-like protein (AT5g59540/f2o15_200), partial
(30%)
Length = 690
Score = 27.7 bits (60), Expect = 1.2
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = -2
Query: 71 SDNNSFISPCEYEFSC 86
SDNNSFI P ++F C
Sbjct: 365 SDNNSFIGPITFDFPC 318
>AI967809
Length = 482
Score = 26.9 bits (58), Expect = 2.0
Identities = 17/56 (30%), Positives = 27/56 (47%)
Frame = +2
Query: 90 PANPLRHSSRRFSKSRRQRHNDFSIMNNNIAVQKVFIEMMLNNEKVEAVANSPLAP 145
P PL + SK+ R RH F ++NN+ +++ N + + AN LAP
Sbjct: 17 PL*PLIILVKALSKNARCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQANRFLAP 184
>BP062685
Length = 540
Score = 26.9 bits (58), Expect = 2.0
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +3
Query: 91 ANPLRHSSRRFSKSRRQRHNDFSIMNNNIAVQKVFIEMMLNNEKVEAVANSPLAPFTLED 150
++P R +S ++ ++ D+S+ NN A + V IE + +A S + ED
Sbjct: 111 SHPQRSASPSM-EAEEEKMEDYSVAENNSAAESVRIENEQPEKIEKASPGSAMISGCHED 287
Query: 151 EGNCHQVDIAAEEF 164
E ++ + EF
Sbjct: 288 ENAASGKEVGSSEF 329
>TC11052 weakly similar to UP|Q9AVM0 (Q9AVM0) Cytochrome P450, partial (19%)
Length = 518
Score = 26.9 bits (58), Expect = 2.0
Identities = 17/71 (23%), Positives = 32/71 (44%), Gaps = 3/71 (4%)
Frame = -3
Query: 54 NTLMLNHQLYHSSFTCRSDNNSFISPCEYEFSCRNTPANPLRHSSRRFSKSRRQRHNDFS 113
N ++++H +H F F+ CR +P +P S R + N+FS
Sbjct: 387 NCIIVSHVDFHIRFLATRQR*FFL--------CRASPCSPSSSMSSRVIPGGVSQSNEFS 232
Query: 114 ---IMNNNIAV 121
+M++N+A+
Sbjct: 231 RFAVMSSNVAI 199
>TC16835
Length = 462
Score = 26.6 bits (57), Expect = 2.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 157 VDIAAEEFINNFYKELNRQNR 177
VD AE+FI FY++L Q+R
Sbjct: 58 VDDQAEDFIRRFYEQLKTQSR 120
>AV766622
Length = 750
Score = 26.6 bits (57), Expect = 2.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 63 YHSSFTCRSDNNSFISPCEYEFSCRNTPANPLR 95
+ S+ +CR + + F S Y+ S P NP +
Sbjct: 414 FPSTVSCRKEKDKFSS*APYQISAPEKPVNPFQ 316
>BI418377
Length = 373
Score = 26.2 bits (56), Expect = 3.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 91 ANPLRHSSRRFSKSRRQRHND 111
A PL+ +SRR K RR H D
Sbjct: 331 ARPLKQNSRRSRKGRRPTHGD 269
>TC10585 similar to UP|Q9ZP40 (Q9ZP40) Plastoglobule associated protein PG1
precursor, partial (52%)
Length = 807
Score = 26.2 bits (56), Expect = 3.5
Identities = 21/85 (24%), Positives = 36/85 (41%), Gaps = 2/85 (2%)
Frame = -2
Query: 42 LKRGKLAGKAL--INTLMLNHQLYHSSFTCRSDNNSFISPCEYEFSCRNTPANPLRHSSR 99
+++G+L + + L+HQL H S R + +SP E S +P P+ +
Sbjct: 575 IEKGRLLHRCQCGVRRFQLSHQLRHLSSNLRPSSKPELSP---EHSVYQSPLQPIEVTIH 405
Query: 100 RFSKSRRQRHNDFSIMNNNIAVQKV 124
+ R + SI N+A V
Sbjct: 404 SILRRSFGRSSWSSITGVNVATAGV 330
>TC17508 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;}, partial (34%)
Length = 999
Score = 25.8 bits (55), Expect = 4.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 93 PLRHSSRRFSKSRRQRHNDFSI 114
P+ H RR S RRQRH+ S+
Sbjct: 37 PISHHGRRVSILRRQRHHPTSL 102
>TC8197 UP|Q8S2Z7 (Q8S2Z7) GTP-binding protein, complete
Length = 996
Score = 25.4 bits (54), Expect = 5.9
Identities = 9/26 (34%), Positives = 19/26 (72%)
Frame = -2
Query: 17 MVRVLLFIIRKGIAKSKTMVHLNLIL 42
+++ ++ IIRKG+ S++ + L L+L
Sbjct: 758 LIKCIIIIIRKGLTSSRSKLSLMLLL 681
>TC18709
Length = 356
Score = 25.0 bits (53), Expect = 7.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 80 CEYEFSCRNTPANPLRH 96
C++ CR++PA LRH
Sbjct: 109 CKHRSGCRSSPAQSLRH 159
>TC9324 weakly similar to UP|Q945L9 (Q945L9) AT5g11010/T30N20_280, partial
(20%)
Length = 785
Score = 25.0 bits (53), Expect = 7.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 81 EYEFSCRNTPANPLRHSSRRFSKSRRQRHNDFSIMNNNIAVQKV 124
E+ F C NTP NP + R +S R + NN ++Q V
Sbjct: 393 EHTFDCVNTPHNPKTKTPR*IFRSFR-----INC*TNNASIQTV 277
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,039,722
Number of Sequences: 28460
Number of extensions: 39453
Number of successful extensions: 226
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of query: 181
length of database: 4,897,600
effective HSP length: 85
effective length of query: 96
effective length of database: 2,478,500
effective search space: 237936000
effective search space used: 237936000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Medicago: description of AC137546.6