TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137546.13 - phase: 0 
         (363 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11679 similar to UP|Q8I738 (Q8I738) TcC31.4, partial (8%)           140  4e-34
TC13743                                                                76  8e-15
AV421569                                                               62  2e-10
AW163891                                                               28  1.8
TC13549 similar to UP|Q9STG6 (Q9STG6) dUTP pyrophosphatase-like ...    28  3.2
TC14454 similar to UP|O04133 (O04133) SRC2, partial (88%)              28  3.2
AV770492                                                               27  7.0

>TC11679 similar to UP|Q8I738 (Q8I738) TcC31.4, partial (8%)
          Length = 652

 Score =  140 bits (352), Expect = 4e-34
 Identities = 75/135 (55%), Positives = 99/135 (72%)
 Frame = +3

Query: 223 SFRSEASITPSVLATMTQIAHAELPRLILPKFGSKVSDQFVESGRQVPVMVPVSAAMAAF 282
           SFR+EA I+P+VLAT++ +AHAELP  ++   G            ++PV++P+ AA+AA 
Sbjct: 3   SFRTEAGISPAVLATLSHVAHAELP--LVASAGETT---------KLPVVMPLGAALAAC 149

Query: 283 ALHLQLRYGEKSDGVVTCRDAEVPGSVVVRPNMKLDHAWMVYSSNSKKKKSSEPDAREMC 342
           A  LQ+RYGEKSDG+VTCRDAEVPGSVVVRP  KLDHAWMVYS  S     +E DA ++C
Sbjct: 150 AQLLQVRYGEKSDGLVTCRDAEVPGSVVVRPTRKLDHAWMVYS--SLNDDPAEGDASQVC 323

Query: 343 QAIFTLLVELGKTER 357
           +A+ TLLVE+G+ +R
Sbjct: 324 EALLTLLVEVGQKKR 368


>TC13743 
          Length = 504

 Score = 76.3 bits (186), Expect = 8e-15
 Identities = 40/60 (66%), Positives = 45/60 (74%)
 Frame = +3

Query: 106 EIKQYIEEIYWGSGKPVMLLGHSKGGIDAAAALSLYWSDLKGKVAGLALVQSPYGGTPIA 165
           EI +YIEE YWGS K V+LLGHSK G+ AAAALSLYW DL      + + QSPYGGTPIA
Sbjct: 12  EIIEYIEETYWGSKKRVLLLGHSK-GVHAAAALSLYWYDLN----EIGIAQSPYGGTPIA 176



 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +3

Query: 308 SVVVRPNMKLDHAWMVYSSNSKKKKSSEPDAREMCQAIFTLLVELGKTEREV 359
           SVVV P  K+DHAW VY+  +        DA ++C+A+ +LLVE+ +   E+
Sbjct: 207 SVVVGPKQKMDHAWTVYTPLN--------DASQVCEALLSLLVEMAE*SHEL 338


>AV421569 
          Length = 262

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +2

Query: 24 LQHAPGMPPVHDGSSRFLELLSDIRNGKDSIPSSFVYLLIPG 65
          LQ APGMPPV DG+ RFLE+L +I++G   +P+S VYLLIPG
Sbjct: 5  LQRAPGMPPVEDGTERFLEILGNIKHGVHKLPNSVVYLLIPG 130


>AW163891 
          Length = 335

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 25  QHAPGMPPVHDGSSRFLELLSDIRNGKDSIPSSFVYLLIP 64
           QH  G  P+ +GSS  LE+ +D  N      S +  + IP
Sbjct: 136 QHVYGYKPIPEGSSESLEISTDRENAASLAKSLYTAIGIP 255


>TC13549 similar to UP|Q9STG6 (Q9STG6) dUTP pyrophosphatase-like protein  ,
           partial (76%)
          Length = 597

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 6/57 (10%)
 Frame = +3

Query: 151 GLALVQSPYGGTPIA------SDILREGQIGDKETRRILELIICKIIKGDIRALEDL 201
           G  ++ + Y G P+       SD+  E +IGD    RI +LII KI+  D+  +EDL
Sbjct: 183 GAGVIDADYRG-PVGVILFNHSDLDFEVKIGD----RIAQLIIEKIVTPDVAEVEDL 338


>TC14454 similar to UP|O04133 (O04133) SRC2, partial (88%)
          Length = 1190

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 25/88 (28%), Positives = 40/88 (45%)
 Frame = +1

Query: 212 KHKLPLDIPLISFRSEASITPSVLATMTQIAHAELPRLILPKFGSKVSDQFVESGRQVPV 271
           +++L L++ L+S R+ A  T  V+ T+    H  +  L+    G    D F    RQV  
Sbjct: 394 QNRLSLEVKLLSDRTLAGDT--VIGTV----HIPIKELLDNPGGGGGGDSF----RQVSY 543

Query: 272 MVPVSAAMAAFALHLQLRYGEKSDGVVT 299
            V  S+  A    +   ++GEK D   T
Sbjct: 544 QVKRSSGKAKGTFNFSYKFGEKVDAPAT 627


>AV770492 
          Length = 479

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 17/38 (44%), Positives = 20/38 (51%)
 Frame = -3

Query: 326 SNSKKKKSSEPDAREMCQAIFTLLVELGKTEREVEQVL 363
           SN KKK+ S PD RE C   +T     GK   EV  +L
Sbjct: 390 SN*KKKEMSLPDQRECCYRHWT--C*KGKDTEEVSAIL 283


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,678,936
Number of Sequences: 28460
Number of extensions: 74064
Number of successful extensions: 345
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of query: 363
length of database: 4,897,600
effective HSP length: 91
effective length of query: 272
effective length of database: 2,307,740
effective search space: 627705280
effective search space used: 627705280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)