BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137510.5 - phase: 0
(1519 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 189 2e-48
BP075943 132 3e-31
BP066094 97 2e-22
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 102 5e-22
BP084332 98 9e-21
AU088980 97 2e-20
AV424544 93 4e-19
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 92 5e-19
BP043850 91 1e-18
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 86 6e-17
BP054557 81 1e-15
BP057233 78 1e-14
BP063694 77 2e-14
AV427921 68 1e-11
AV410378 65 1e-10
AV766088 64 1e-10
TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragm... 40 1e-09
BP033602 60 3e-09
AV411594 54 2e-08
AV409763 57 3e-08
>AV780009
Length = 529
Score = 189 bits (481), Expect = 2e-48
Identities = 93/163 (57%), Positives = 119/163 (72%)
Frame = -1
Query: 1314 EAALRVVRYLKKHPGQGILLRSDSELKLEGWCDSDWASCPLTRRSLTGWVVLLDLSPVSW 1373
+AA RV+RY+K P QG+ +DS LKL+ + DSDWA CP TRRS+TG+ + L S +SW
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 1374 KTKKQPTVSRSSAEAEYRSMAMTTCELKWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQN 1433
+TKKQ TVSRSS+EAEYR++A T CE++WL L L ++ + L+CD++SALHIA N
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHN 170
Query: 1434 PVFHERTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTK 1476
P FHERTKHIE DCH VR + AG+I L + T QLADIFTK
Sbjct: 169 PTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTK 41
>BP075943
Length = 547
Score = 132 bits (333), Expect = 3e-31
Identities = 68/160 (42%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Frame = -3
Query: 1179 VLVYVDDLIIAGNDIAALKIFKAYLGVCFHMKDLGVLKYFLGLEVARNHEGIYLCQRKYA 1238
+L+YVDD+++AGND+ +++ K+ L F +KDLG KYFLGLE+AR+ GI L QRKYA
Sbjct: 521 LLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYA 342
Query: 1239 LEIIDETGLLGAKPADFPMEQHHK-LALVSGKPLEDPEPYRRLIGRLIYLSVTRPDLAYS 1297
L++I ++G G +P + + + L +G PL D YRR++GRL+YL+ TRPD+ ++
Sbjct: 341 LQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITFA 162
Query: 1298 VHILSQFMQKPCEEHWEAALRVVRYLKKHPGQGILLRSDS 1337
V+ LSQF+ P + H + ++YL PG G+ + S
Sbjct: 161 VNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASS 42
>BP066094
Length = 532
Score = 97.1 bits (240), Expect(2) = 2e-22
Identities = 57/151 (37%), Positives = 87/151 (56%), Gaps = 3/151 (1%)
Frame = +2
Query: 1075 AKMVTVRTFLAVAAIKKWEVHQMDVHNAFLHGDLEEEVYMKVPPGF---KNTDPNLVCRL 1131
+K +R ++ + +HQM+V +AFL+G + EEVY+ PPG KN+D + +L
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDH--IFKL 259
Query: 1132 KKSLYGLKQAPRCWFAKLVTALKRYGFVQSYSDYSLFTLHRGEIQINVLVYVDDLIIAGN 1191
KKSLYGLKQAPR W+ +L + L V+ D +LF + + V +YVDD+I
Sbjct: 260 KKSLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSA 439
Query: 1192 DIAALKIFKAYLGVCFHMKDLGVLKYFLGLE 1222
+ + K F + F M+ +G LKYFLG++
Sbjct: 440 NPSLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 27.3 bits (59), Expect(2) = 2e-22
Identities = 11/13 (84%), Positives = 12/13 (91%)
Frame = +3
Query: 1064 GIDYDETFAPVAK 1076
GIDY ETFAPVA+
Sbjct: 54 GIDYTETFAPVAR 92
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 102 bits (254), Expect = 5e-22
Identities = 53/103 (51%), Positives = 67/103 (64%), Gaps = 1/103 (0%)
Frame = +1
Query: 1401 KWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQNPVFHERTKHIEADCHFVRDAVVAGIIC 1460
+WL LL DL V Q +YCD+ SA HIA NPVFHERTKHIE DCH VR+ + G+I
Sbjct: 1 QWLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIH 180
Query: 1461 PLYVPTSVQLADIFTKALGKAQFEFLLRKLGIRDLHAPE-GGY 1502
L + +S LADI+TKAL F + KLG+ ++ +P GGY
Sbjct: 181 LLPISSSEPLADIYTKALSPQNFHQICAKLGLINICSPACGGY 309
>BP084332
Length = 368
Score = 98.2 bits (243), Expect = 9e-21
Identities = 47/113 (41%), Positives = 73/113 (64%)
Frame = +2
Query: 1378 QPTVSRSSAEAEYRSMAMTTCELKWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQNPVFH 1437
Q T++ S+AEAEY S A+ + ++ W+K L D + S + +YCD+ +A+ +++NP+ H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILH 208
Query: 1438 ERTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTKALGKAQFEFLLRKL 1490
R KHIE HF+RD V G++ +V T Q ADIFTK L + +F F+L+ L
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
>AU088980
Length = 360
Score = 97.1 bits (240), Expect = 2e-20
Identities = 47/110 (42%), Positives = 64/110 (57%)
Frame = +2
Query: 678 NGRVERKHQHIMNVARALRFQGHLPMQFWGECVLTACYLINRTPSSVLNYKTPYEKLFGK 737
N VERKH+HI+NV RAL F +LP W V A YLIN PS +L + PY+ L
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 738 VPKFDNMKIFGCLCYAHNQRRDGDKFASRSRKCIFVGYPYGKKGWKLYDL 787
P ++K+FG LCY+ + K R+RKC+F+G+ G G+ + DL
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDL 331
>AV424544
Length = 276
Score = 92.8 bits (229), Expect = 4e-19
Identities = 49/91 (53%), Positives = 63/91 (68%)
Frame = +3
Query: 1147 AKLVTALKRYGFVQSYSDYSLFTLHRGEIQINVLVYVDDLIIAGNDIAALKIFKAYLGVC 1206
AKL + L G++QS D+SLFT R +LVYVDDLI+AGND+ ++ K L +
Sbjct: 3 AKLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQ 182
Query: 1207 FHMKDLGVLKYFLGLEVARNHEGIYLCQRKY 1237
F +KDLG LKYFLGLEVAR+ G++L QRKY
Sbjct: 183 FRIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 92.4 bits (228), Expect = 5e-19
Identities = 48/104 (46%), Positives = 63/104 (60%)
Frame = +1
Query: 1398 CELKWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQNPVFHERTKHIEADCHFVRDAVVAG 1457
CEL WL +L DL V LYCDS+SA HIA N VFHERTKH++ DCH VR+ + A
Sbjct: 1 CEL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAK 180
Query: 1458 IICPLYVPTSVQLADIFTKALGKAQFEFLLRKLGIRDLHAPEGG 1501
+ L + + Q ADI TK L F L+ KLG+ ++++ G
Sbjct: 181 LFHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLNIYSSACG 312
>BP043850
Length = 515
Score = 91.3 bits (225), Expect = 1e-18
Identities = 46/92 (50%), Positives = 62/92 (67%)
Frame = -1
Query: 1399 ELKWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQNPVFHERTKHIEADCHFVRDAVVAGI 1458
E+ WL+ LL +LG SQ L+ D+ SA+ IA NPV+HE T+HIE DCH VR+A +
Sbjct: 512 EIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRV 333
Query: 1459 ICPLYVPTSVQLADIFTKALGKAQFEFLLRKL 1490
I +V TSVQ+ADI TK+L + + FL+ KL
Sbjct: 332 ITLPHVSTSVQIADILTKSLTRQRHNFLVSKL 237
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 85.5 bits (210), Expect = 6e-17
Identities = 40/83 (48%), Positives = 58/83 (69%)
Frame = +3
Query: 1398 CELKWLKQLLGDLGVSHSQGMQLYCDSKSALHIAQNPVFHERTKHIEADCHFVRDAVVAG 1457
CE WL L DL ++ + +YCD++SALH+A N VFH+RT++IE DCH V V+ G
Sbjct: 18 CEALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFG 197
Query: 1458 IICPLYVPTSVQLADIFTKALGK 1480
I+ L+VP+S Q+AD+FTK + +
Sbjct: 198 ILHLLHVPSSDQVADVFTKTISQ 266
>BP054557
Length = 538
Score = 80.9 bits (198), Expect = 1e-15
Identities = 57/179 (31%), Positives = 77/179 (42%), Gaps = 14/179 (7%)
Frame = -2
Query: 397 IIDTGASHHVTGNFSCLINGKRITNTPVGLPNGKDATAIQEGSVILDGGLRLNNVLFVPQ 456
++DTGA+HHV N +++ + +PNG+ A SV L VL+VP
Sbjct: 537 LLDTGATHHVCHNLDVFQALRQVHPVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVPS 358
Query: 457 LTCNLISVTQLIDDSNCIVQFTNALCVIQDRTTRTLIGAGERIDGLY-FFRGVPKVHALM 515
NLISV+ L+ NC + + C++Q+R T IGA E GLY K
Sbjct: 357 FNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKTIGAAEERGGLYAVIDPAVKAKHPP 178
Query: 516 VEGDSA------------MDLWHKRLGHPSEKVLKFIPHVSQHSRSKN-NRPCDVCPRA 561
EG+ +LWH RLGH S K L + K PCD C A
Sbjct: 177 AEGNIKTQVSHFNFCQFDCNLWHLRLGHTSSKKLAILQKNFPFITCKQITSPCDTCHMA 1
>BP057233
Length = 473
Score = 77.8 bits (190), Expect = 1e-14
Identities = 41/94 (43%), Positives = 56/94 (58%), Gaps = 7/94 (7%)
Frame = -2
Query: 1420 LYCDSKSALHIAQNPVFHERTKHIEADCHFVRDAVVAGIICPLYVPTSVQLADIFTKALG 1479
L+CD+ SA +A NPV H R+KHIE D H++RD V+ + YVPT+ Q+AD TK L
Sbjct: 445 LWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKPLS 266
Query: 1480 KAQFEFLLRKLGIRDLHAP-------EGGYWDYC 1506
+F L KLG+ +H+P E + DYC
Sbjct: 265 HTRFSQLRDKLGV--IHSPPV*RGELET*FLDYC 170
>BP063694
Length = 511
Score = 77.0 bits (188), Expect = 2e-14
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 7/163 (4%)
Frame = -2
Query: 483 VIQDRTTRTLIGAGERIDGLYFFRGVPKVHALMVEGD----SAMDLWHKRLGHPSEKVLK 538
VIQ+R T ++G GLY AL+ ++ +LWH RLGH + ++K
Sbjct: 489 VIQNRKTGAVLGRXRCDQGLYVLN--QDSQALLTTSSPLPRASFELWHSRLGHVNFDIIK 316
Query: 539 FI-PHVSQHSRSKNNRP--CDVCPRAKQHRDSFPLSENNAASLFELVHCDLWGSYRTRSS 595
+ H S +P C C AK R F + A+++ +L+HCDL G S
Sbjct: 315 QLHKHGCLDVSSILPKPICCTSCQMAKSKRLVFHDNNKRASAVLDLIHCDLRGPSPVASI 136
Query: 596 CGAQYYLTIVNDYSRAVWVYLLCNKTEIETMFLNFVAFVDRQF 638
G Y++ V+D+SR W Y L K++ + L F F++ +F
Sbjct: 135 DGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMENRF 7
>AV427921
Length = 284
Score = 67.8 bits (164), Expect = 1e-11
Identities = 33/81 (40%), Positives = 49/81 (59%)
Frame = +1
Query: 674 TPQQNGRVERKHQHIMNVARALRFQGHLPMQFWGECVLTACYLINRTPSSVLNYKTPYEK 733
TPQQNG ERK++ I+N+ R+L LP F E V+ + +++NR+P+ V+ P E
Sbjct: 22 TPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEEA 201
Query: 734 LFGKVPKFDNMKIFGCLCYAH 754
G+ P D+ +I CL YAH
Sbjct: 202 WSGRQPAVDHFRISRCLAYAH 264
>AV410378
Length = 358
Score = 64.7 bits (156), Expect = 1e-10
Identities = 30/82 (36%), Positives = 46/82 (55%)
Frame = +1
Query: 947 SSKSSSAQEDASGTPYPITYFVSCERFSIRHRNFVAAVTAGKEPNNFKEAVKDSGWRDAM 1006
+S + S ++G YP++ +S + + +R F+ +T EP + EAVK WR AM
Sbjct: 112 ASTTVSKVPSSAGISYPLSKVISYHKLTPSYRAFIMNITTVSEPTRYSEAVKHECWRKAM 291
Query: 1007 RNEIQALEDNETWVMEKLPPGK 1028
EI+ALE N TW++ PP K
Sbjct: 292 DQEIEALERNHTWILVDKPPDK 357
>AV766088
Length = 501
Score = 64.3 bits (155), Expect = 1e-10
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = -3
Query: 521 AMDLWHKRLGHPSEKVLKFIPHVSQHSRSKNNRP--CDVCPRAKQHRDSFPLSENNAASL 578
A LWH RLGHPS L+++ S N C+ C K R F S N
Sbjct: 316 AQSLWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPFVSSNNVTVMP 137
Query: 579 FELVHCDLWGSYRTRSSCGAQYYLTIVNDYSRAVWVYLLCNKTEI 623
F+++H DLW S SS G ++Y+ ++D++ +W + L NK+++
Sbjct: 136 FDILHSDLWTS-PVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQV 5
>TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(20%)
Length = 479
Score = 40.0 bits (92), Expect(3) = 1e-09
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +3
Query: 1402 WLKQLLGDLGVSHSQGMQLYCDSKSALHIAQNP 1434
W+ Q+L ++G+ M L+CD+++ALHI+ NP
Sbjct: 3 WVGQILSEMGIERISPMPLWCDNQAALHISSNP 101
Score = 30.8 bits (68), Expect(3) = 1e-09
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 1437 HERTKHIEADCH 1448
HERTKHIE DCH
Sbjct: 113 HERTKHIEVDCH 148
Score = 28.9 bits (63), Expect(3) = 1e-09
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 1458 IICPLYVPTSVQLADIFTKALGKAQFEFLLRKL 1490
+I YV T+ L D+FTKAL + +F+ +L
Sbjct: 178 LISTSYVRTATHLPDVFTKALNGVRNDFICNQL 276
>BP033602
Length = 533
Score = 60.1 bits (144), Expect = 3e-09
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = +3
Query: 488 TTRTLIGAGERIDGLYFFRGVPKVHALM----VEGDSAMD---LWHKRLGHPSEKVLKFI 540
T + +IG+ + DGLY+F + A + S D LWH RLGHP+ + L+ +
Sbjct: 147 T*QKMIGSAKMKDGLYYFEDTFRNKAAQGLCGMSCTSVRDQIMLWHNRLGHPNFQYLRHL 326
Query: 541 PHVSQHSRSKNNRPCDVCPRAKQHRDSFPLSENNAASLFELVHCDLWGSYRTRSSCGAQY 600
+ + ++ C+ C AK R + +A+ F L+H D+WG + + G ++
Sbjct: 327 FPDLFKNVNCSSLECESCVLAKNQRAPYYSQPYHASRPFYLIHSDVWGPSKITTQFGKRW 506
Query: 601 YLTIVNDYS 609
++T ++D++
Sbjct: 507 FVTFIDDHT 533
>AV411594
Length = 244
Score = 53.5 bits (127), Expect(2) = 2e-08
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = +2
Query: 1218 FLGLEVARNHEGIYLCQRKYALEIIDETGLLGAKPADFPMEQHHKLALVSGKPLEDPEPY 1277
FL +A++ +GI L +RKYAL+++D+T +G KP FP++ KL G+ L D Y
Sbjct: 50 FLRT*IAKSKKGILLSRRKYALQLLDDTRNMGCKPPPFPLDPSIKLNSTDGELLSDVTLY 229
Query: 1278 RRLIG 1282
R IG
Sbjct: 230 IRFIG 244
Score = 23.5 bits (49), Expect(2) = 2e-08
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 1203 LGVCFHMKDLGVLKYFLGLE 1222
L F +K L +KYFLGLE
Sbjct: 6 LAKSFKLKVLDDMKYFLGLE 65
>AV409763
Length = 426
Score = 56.6 bits (135), Expect = 3e-08
Identities = 29/79 (36%), Positives = 44/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 27 FFLGSNDNPGNVITPIQLRGLNYDEWSRAIRTSFQAKRKYGFVEGKIPKPTTPEKL-EDW 85
F+L +DNPG + L G NY WSRA+R + AK K GFV+ I P + L W
Sbjct: 182 FYLHPSDNPGISLVSQVLTGDNYRSWSRAMRMALIAKNKLGFVDASILVPDELDPLFHPW 361
Query: 86 KAVQSMLIAWLLNTIEPSL 104
+ +++ +W+LN++ L
Sbjct: 362 QRNNNIVASWILNSVSKDL 418
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,506,216
Number of Sequences: 28460
Number of extensions: 419563
Number of successful extensions: 2321
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 2208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2284
length of query: 1519
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1417
effective length of database: 1,994,680
effective search space: 2826461560
effective search space used: 2826461560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC137510.5