BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137079.15 + phase: 0 /pseudo
(864 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP075943 179 2e-45
AV780009 145 3e-35
AU088980 134 5e-32
AV424544 106 1e-23
BP066094 99 2e-23
AV410378 95 5e-20
BP063694 86 3e-17
BP058111 83 2e-16
AV766088 79 4e-15
BP081717 65 4e-11
BP033602 65 5e-11
AV411594 65 5e-11
AV427921 64 8e-11
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 57 1e-08
BP054557 57 1e-08
AV766665 56 2e-08
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 46 3e-05
TC18909 35 2e-04
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 42 4e-04
AV767042 41 0.001
>BP075943
Length = 547
Score = 179 bits (454), Expect = 2e-45
Identities = 93/167 (55%), Positives = 119/167 (70%), Gaps = 1/167 (0%)
Frame = -3
Query: 626 SGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSKSGIL 685
S SFTALL+YVDD++LAGN + EI+ VK+ L ++F IKDLG+ +YFLG EIARS SGI+
Sbjct: 542 SSGSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIV 363
Query: 686 LNQRKYTLELLEDAGTLGSKPAATPFDPSTK-LGATTGTPFTDASSYRRLIGRLLYLTNT 744
LNQRKY L+L+ D+G G +P +++ LG TGTP TD SYRR++GRLLYL T
Sbjct: 362 LNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTT 183
Query: 745 RPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSS 791
RPDI+++V LSQF+S P H Q LKYL SP GLF+ +SS
Sbjct: 182 RPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASS 42
>AV780009
Length = 529
Score = 145 bits (365), Expect = 3e-35
Identities = 67/97 (69%), Positives = 83/97 (85%)
Frame = -1
Query: 768 QAAQRILKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISW 827
QAA R+L+Y+K +PA+GLFFS+ S LKL ++DSDWA CPDTRRSVTGY + LG+SLISW
Sbjct: 529 QAATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISW 350
Query: 828 KSKKQSTVSRSSTEAEYRALAHLTCELQWLNYLFHDL 864
++KKQ+TVSRSS+EAEYRALA CE+QWL+YLF L
Sbjct: 349 RTKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFL 239
>AU088980
Length = 360
Score = 134 bits (338), Expect = 5e-32
Identities = 60/110 (54%), Positives = 83/110 (74%)
Frame = +2
Query: 186 NGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFKSPFELLHKE 245
N +VERKH+HILNV R+L FHS++P +W F V+HA ++IN +PSPLLK + P++ L+ +
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 246 PPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYDL 295
P+++ LKVFG L Y+STL + K +PRARK +FLGFK GT G I+ DL
Sbjct: 182 SPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVFLGFKTGTXGYIVMDL 331
>AV424544
Length = 276
Score = 106 bits (265), Expect = 1e-23
Identities = 54/91 (59%), Positives = 68/91 (74%)
Frame = +3
Query: 601 SKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNK 660
+KLS+ L GY QS D+SLF K ASFT +LVYVDD++LAGN ++EI+ VK LD +
Sbjct: 3 AKLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQ 182
Query: 661 FCIKDLGQLRYFLGFEIARSKSGILLNQRKY 691
F IKDLG L+YFLG E+ARS G+ L+QRKY
Sbjct: 183 FRIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>BP066094
Length = 532
Score = 99.4 bits (246), Expect(2) = 2e-23
Identities = 56/149 (37%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Frame = +2
Query: 529 AKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPTI-NSSQVCKLNK 587
+K IR+L+S + L Q++V +AFL+G + EEVY+ PPG NS + KL K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 588 SLYGLKQASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVDDIVLAGNCI 647
SLYGLKQA R WY +LS+ L+ + D +LF K + +YVDDI+
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 648 SEIKSVKTFLDNKFCIKDLGQLRYFLGFE 676
S K + +F ++ +G+L+YFLG +
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 27.3 bits (59), Expect(2) = 2e-23
Identities = 10/18 (55%), Positives = 15/18 (82%)
Frame = +3
Query: 513 YTQTEGVDYFDTFSPVAK 530
Y+Q G+DY +TF+PVA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>AV410378
Length = 358
Score = 94.7 bits (234), Expect = 5e-20
Identities = 47/103 (45%), Positives = 65/103 (62%), Gaps = 2/103 (1%)
Frame = +1
Query: 382 RKSTRISQRPSYLADYHCNLP-SKSCSNVSSGIS-SYPLSSFLSYDNCSPTYTHFCCTIS 439
R S R+ + PSYL DYHC L S + S V S SYPLS +SY +P+Y F I+
Sbjct: 49 RISNRVRRPPSYLQDYHCTLAASTTVSKVPSSAGISYPLSKVISYHKLTPSYRAFIMNIT 228
Query: 440 SINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGK 482
+++EP +++A K ECWR+AM E+ AL +N+TW +V PP K
Sbjct: 229 TVSEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKPPDK 357
>BP063694
Length = 511
Score = 85.9 bits (211), Expect = 3e-17
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = -2
Query: 29 FDVWHMRLGHVSSSGLSVISKQ--FPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAP 86
F++WH RLGHV+ + + K + C +C AK KRL F ++ ++SA
Sbjct: 366 FELWHSRLGHVNFDIIKQLHKHGCLDVSSILPKPICCTSCQMAKSKRLVFHDNNKRASAV 187
Query: 87 FDLLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQF 146
DL+H DL GP S G YF+ VDD+SRFTW LK K + L F ++EN+F
Sbjct: 186 LDLIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFMENRF 7
>BP058111
Length = 570
Score = 83.2 bits (204), Expect = 2e-16
Identities = 37/65 (56%), Positives = 46/65 (69%)
Frame = -1
Query: 27 DCFDVWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAP 86
DC ++WH+RLGH SS L+++ K FPFI C K PCD CH AKQK+L FP+S SS
Sbjct: 195 DC-NLWHLRLGHTSSKKLAILQKNFPFITCKKITSPCDTCHMAKQKKLSFPNSVTLSSEI 19
Query: 87 FDLLH 91
FDL+H
Sbjct: 18 FDLIH 4
>AV766088
Length = 501
Score = 78.6 bits (192), Expect = 4e-15
Identities = 39/103 (37%), Positives = 61/103 (58%), Gaps = 3/103 (2%)
Frame = -3
Query: 31 VWHMRLGHVSSSGLSVI-SKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFDL 89
+WH RLGH SSS L + S +F + +P C++C + K RLPF S+ + PFD+
Sbjct: 307 LWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPFVSSNNVTVMPFDI 128
Query: 90 LHADLWGPYSTP--SFLGHKYFLTLVDDYSRFTWVIFLKTKDE 130
LH+DLW ++P S GH++++ +DD++ F W L K +
Sbjct: 127 LHSDLW---TSPVLSSAGHRFYVLFLDDFTDFLWTFPLSNKSQ 8
>BP081717
Length = 291
Score = 65.5 bits (158), Expect = 4e-11
Identities = 33/59 (55%), Positives = 37/59 (61%)
Frame = -1
Query: 29 FDVWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPF 87
FD+WH RLGH SS L ISK FP++ N CD CH AKQ +LPFP S KS A F
Sbjct: 174 FDMWHFRLGHPSSKVLQHISKVFPYVKLHSNI-ICDFCHMAKQTKLPFPISDTKSKACF 1
>BP033602
Length = 533
Score = 65.1 bits (157), Expect = 5e-11
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = +3
Query: 19 LSCNSVFTDCFDVWHMRLGHVSSSGLS-VISKQFPFIPCIKNAPPCDACHYAKQKRLPFP 77
+SC SV D +WH RLGH + L + F + C ++ C++C AK +R P+
Sbjct: 243 MSCTSV-RDQIMLWHNRLGHPNFQYLRHLFPDLFKNVNC--SSLECESCVLAKNQRAPYY 413
Query: 78 HSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDDYS 117
+S PF L+H+D+WGP + G ++F+T +DD++
Sbjct: 414 SQPYHASRPFYLIHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>AV411594
Length = 244
Score = 65.1 bits (157), Expect = 5e-11
Identities = 33/65 (50%), Positives = 42/65 (63%)
Frame = +2
Query: 672 FLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGTPFTDASSY 731
FL IA+SK GILL++RKY L+LL+D +G KP P DPS KL +T G +D + Y
Sbjct: 50 FLRT*IAKSKKGILLSRRKYALQLLDDTRNMGCKPPPFPLDPSIKLNSTDGELLSDVTLY 229
Query: 732 RRLIG 736
R IG
Sbjct: 230 IRFIG 244
>AV427921
Length = 284
Score = 64.3 bits (155), Expect = 8e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +1
Query: 178 TCVETPQQNGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFKS 237
T TPQQNGV ERK++ ILN+ RSL S +P + V ++HI+NR P+ +++
Sbjct: 10 TAAYTPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMM 189
Query: 238 PFELLHKEPPSIIHLKVFGCLAYA 261
P E P++ H ++ CLAYA
Sbjct: 190 PEEAWSGRQPAVDHFRISRCLAYA 261
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 57.4 bits (137), Expect = 1e-08
Identities = 48/167 (28%), Positives = 78/167 (45%), Gaps = 14/167 (8%)
Frame = +2
Query: 607 LISFGYTQSLADYSLFVK-VSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKD 665
++S GY + +D+ + K F LL+YVDD+++ G ++ +K L +F +KD
Sbjct: 14 IMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKD 193
Query: 666 LGQLRYFLGFEIARSKSG--ILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGT 723
LG LG +I R + I L+Q+ Y ++L P +TP + KL ++
Sbjct: 194 LGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKLSSSM-I 370
Query: 724 PFTDAS-------SYRRLIGRLLYL---TNTRPDI-SYSVQNLSQFV 759
P ++A Y +G L+Y TN R + YS N Q V
Sbjct: 371 PSSEAERMEMSRVPYASAVGSLMYAM*RTNCRGCVPKYSALNAVQGV 511
>BP054557
Length = 538
Score = 57.4 bits (137), Expect = 1e-08
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = -2
Query: 27 DCFDVWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYA 69
DC ++WH+RLGH SS L+++ K FPFI C + PCD CH A
Sbjct: 126 DC-NLWHLRLGHTSSKKLAILQKNFPFITCKQITSPCDTCHMA 1
>AV766665
Length = 601
Score = 56.2 bits (134), Expect = 2e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +3
Query: 772 RILKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKK 831
RI YLK++ +G F + + GF +D+ R S GY + L +L++W+SK+
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 832 QSTVSRSSTEAEYRA 846
Q+ ++RSS EAE RA
Sbjct: 552 QNIIARSSGEAELRA 596
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 45.8 bits (107), Expect = 3e-05
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Frame = -1
Query: 688 QRKYTLELLEDAGTLGSKPAATPFD-PSTKLGATTGTPFTDASSYRRLIGRLLYLTNTRP 746
Q+ Y ++L+ SK +T + G G D++ Y+ LIG + YL R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 747 DISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKLHGFADSDWACC 806
DI V S+F+ P H Q AQR L+Y+K + G+F + + D+
Sbjct: 559 DIVCGVGLRSRFME-P*DCH*QGAQRSLRYIKGTLKDGIFM---LVITM*NSLDTQIVTR 392
Query: 807 PDTRRSVTGYCVLLGSSLISWKS 829
P GY LG ISW S
Sbjct: 391 P-------GYAFHLGRGAISWSS 344
>TC18909
Length = 621
Score = 35.0 bits (79), Expect = 0.051
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 744 TRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYL-KSSPAKGLFFSSSSELKLHGFADSD 802
T P IS+SV + F+S + H A + IL K+ G F ++ F+D+D
Sbjct: 326 TSPQISFSVNKVC*FLSESLEEHGTAGKCILNVT*KAL*TMGFFIQTN----FPAFSDAD 493
Query: 803 WACCPDTRRS 812
WA D RRS
Sbjct: 494 WASNVDDRRS 523
Score = 32.0 bits (71), Expect(2) = 2e-04
Identities = 14/24 (58%), Positives = 18/24 (74%)
Frame = +2
Query: 520 DYFDTFSPVAKLTTIRVLLSLAAI 543
DY +T SPV K T+R+LLSLA +
Sbjct: 62 DYTETVSPVVKPVTVRILLSLAVM 133
Score = 30.4 bits (67), Expect(2) = 2e-04
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 499 GSIERYKARLVAQGYTQT 516
GSI +YKARLVA+G+ QT
Sbjct: 1 GSINKYKARLVAKGFHQT 54
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 42.0 bits (97), Expect = 4e-04
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +3
Query: 63 CDACHYAKQKRLPFPHSSIKSSAPFDLLHADLW 95
CD+C K RLPF S + PFD+LH+DLW
Sbjct: 1029 CDSCVLGKHVRLPFSSSETITLRPFDILHSDLW 1127
>AV767042
Length = 444
Score = 40.8 bits (94), Expect = 0.001
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = -3
Query: 515 QTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAFL 558
QT GVD TFSPV K IR + ++A + W + QL+V N ++
Sbjct: 349 QTAGVDCNKTFSPVVKPAPIRTVFTIALSRSWPIPQLNVQNLWI 218
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,504,077
Number of Sequences: 28460
Number of extensions: 287050
Number of successful extensions: 1739
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of query: 864
length of database: 4,897,600
effective HSP length: 98
effective length of query: 766
effective length of database: 2,108,520
effective search space: 1615126320
effective search space used: 1615126320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC137079.15