TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136973.11 - phase: 2 /pseudo
         (192 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB827165                                                               44  2e-05
BI419302                                                               39  8e-04
BP069435                                                               28  1.0
TC15321 similar to UP|BAD09664 (BAD09664) BHLH protein family-li...    27  2.3
AV408321                                                               27  2.3
AV417531                                                               26  3.9
TC16417 homologue to UP|AAR83884 (AAR83884) Ly200 protein, complete    26  3.9
BP061637                                                               26  3.9
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop...    26  5.1
TC12755 similar to UP|Q9C587 (Q9C587) Replication factor C large...    25  6.6
TC19626 similar to UP|Q7XEQ1 (Q7XEQ1) Contains similarity to chr...    25  8.6
TC18409 weakly similar to UP|Q944A5 (Q944A5) AT3g01590/F4P13_13,...    25  8.6

>CB827165 
          Length = 550

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
 Frame = +1

Query: 102 IFYYYTEWTFTLVMIYFALGTTVSAYGCWKVLNKPPPLQNGEMTEFLRRDLE-------- 153
           ++ +   WT T V IYF LG+ +S +GC++   K      G+  + +  D E        
Sbjct: 166 LYGF*NRWTLTSVTIYFGLGSLLSMHGCYQHHKK----ARGDKVDNVDGDAEKGMHNAPA 333

Query: 154 -TKGSIFTFQSRY----AEEEFEQTAGFWGYLMQITFQV 187
              GS  + Q +      ++   Q AG WGY+ QI FQ+
Sbjct: 334 IPPGSNASDQEKNLKAPEKDPLRQLAGTWGYIFQIIFQI 450


>BI419302 
          Length = 539

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 56  GHVSTSQLWTSCWRGVHPLVLLTTRLFSFVSLAMLLYLDIHEYDASIFYYYT 107
           G +   +LW +C + +HP+ LL  R+ SF+ L  LL  ++      I Y+YT
Sbjct: 383 GLLYEDELWNTCLKRIHPVWLLAYRIVSFIVLLGLLIGNMVADGVGILYFYT 538


>BP069435 
          Length = 423

 Score = 28.1 bits (61), Expect = 1.0
 Identities = 13/32 (40%), Positives = 19/32 (58%)
 Frame = +2

Query: 89  MLLYLDIHEYDASIFYYYTEWTFTLVMIYFAL 120
           +L  +  +E DA I  YYT  +F L ++YF L
Sbjct: 101 LLRLVQAYEIDALIVKYYTFLSFELYLLYFLL 196


>TC15321 similar to UP|BAD09664 (BAD09664) BHLH protein family-like, partial
            (23%)
          Length = 1593

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = +3

Query: 61   SQLWTSCWRGVHPLVLL--TTRLFSFVSLAMLLYLD---IHEYDASIFYYYTEWTFTLVM 115
            S   T C RG++PL LL    RLF  +    LL L    IH+Y   I      W   L  
Sbjct: 1296 STFLTCCRRGIYPLWLLYILPRLFVLIH**RLLKLAKP*IHDYFGDIEISAVGWACHLFC 1475

Query: 116  IY 117
            +Y
Sbjct: 1476 LY 1481


>AV408321 
          Length = 348

 Score = 26.9 bits (58), Expect = 2.3
 Identities = 18/55 (32%), Positives = 26/55 (46%)
 Frame = +1

Query: 41  LLVANSPSSDNRVAIGHVSTSQLWTSCWRGVHPLVLLTTRLFSFVSLAMLLYLDI 95
           LLV  S +SDN +++  VS  Q      R +   V L+   F  +  A  +YL I
Sbjct: 163 LLVEFSKASDNTLSVSTVSDDQTLVQLGRPMLMAVSLSNSFFDDLPKAWFIYLFI 327


>AV417531 
          Length = 300

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
 Frame = +3

Query: 20  VLWTNEGSSTSQSDSNIFVESL--------LVANSPSSDNRVAIGHV 58
           +LW NEG+   +    +F+ ++        L  N P +  R  +GH+
Sbjct: 87  ILWANEGNCDGEESVTLFLRAIGLREYSRYLCFNFPFTHERPLLGHL 227


>TC16417 homologue to UP|AAR83884 (AAR83884) Ly200 protein, complete
          Length = 719

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 20/69 (28%), Positives = 25/69 (35%), Gaps = 4/69 (5%)
 Frame = -2

Query: 20  VLWTNEGSSTSQSDSNIFVESLLVA----NSPSSDNRVAIGHVSTSQLWTSCWRGVHPLV 75
           V+      ST+ +  N   E  LV     N    +   AI H      W  CW   HP V
Sbjct: 577 VIRAKSSRSTNHNPKNTNFEKDLVPCPYPN*EKQNTATAITHPLGCATWQVCW*QQHPTV 398

Query: 76  LLTTRLFSF 84
           L   +  SF
Sbjct: 397 LHALQYPSF 371


>BP061637 
          Length = 492

 Score = 26.2 bits (56), Expect = 3.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 63 LWTSCWRGVHPLVLLTTRLFSFVSLAML 90
          ++ SC   VHPLVL T  LF    L+M+
Sbjct: 92 MYLSCSVCVHPLVLKTQSLFYIYCLSMV 9


>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
           DZ-HRGP precursor, partial (8%)
          Length = 584

 Score = 25.8 bits (55), Expect = 5.1
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 1   WYDFVCFAIVGVSILGALWVLWTNEGSSTSQSDSNIFVESLLVANSPSSDNRVAIGHVST 60
           WY     +++ +S   +  VL T+ G++T+ + S     +  +           +G  +T
Sbjct: 183 WYGIFTISLIAIS---STPVLSTSNGATTTTTTSTSTTRTTTI-----------LGSTTT 320

Query: 61  SQLWTS 66
           S LWTS
Sbjct: 321 SSLWTS 338


>TC12755 similar to UP|Q9C587 (Q9C587) Replication factor C large
           subunit-like protein, partial (3%)
          Length = 477

 Score = 25.4 bits (54), Expect = 6.6
 Identities = 13/41 (31%), Positives = 24/41 (57%), Gaps = 1/41 (2%)
 Frame = -3

Query: 55  IGHVST-SQLWTSCWRGVHPLVLLTTRLFSFVSLAMLLYLD 94
           +GH  T S L   CWRG+  L+L + +    +SL ++ +++
Sbjct: 463 LGHPPTRSTLQFLCWRGISYLLLTSHQDTVIISLILISFVN 341


>TC19626 similar to UP|Q7XEQ1 (Q7XEQ1) Contains similarity to chromaffin
           granule ATPase II homolog, partial (15%)
          Length = 576

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 15/31 (47%)
 Frame = +3

Query: 95  IHEYDASIFYYYTEWTFTLVMIYFALGTTVS 125
           I  Y   I+++Y   TFTL   +F   T  S
Sbjct: 63  ISVYAVVIYFFYKNLTFTLTQFWFTFQTGFS 155


>TC18409 weakly similar to UP|Q944A5 (Q944A5) AT3g01590/F4P13_13, partial
           (51%)
          Length = 609

 Score = 25.0 bits (53), Expect = 8.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 24  NEGSSTSQSDSNIFVESLLVANSPSSDNR 52
           + G  +  +D N+F+ +   +N PSS NR
Sbjct: 431 DRGEGSLSNDHNLFLANPWCSNKPSSPNR 345


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,960,198
Number of Sequences: 28460
Number of extensions: 52317
Number of successful extensions: 450
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of query: 192
length of database: 4,897,600
effective HSP length: 85
effective length of query: 107
effective length of database: 2,478,500
effective search space: 265199500
effective search space used: 265199500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)