BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136954.11 + phase: 0
(174 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC10392 173 1e-44
TC16896 36 0.004
TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%) 35 0.005
BP042407 30 0.17
AV769903 29 0.51
TC18974 weakly similar to PIR|S16321|S16321 light-induced protei... 29 0.51
TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like... 28 0.66
AV416574 28 0.66
BP056955 28 0.66
TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly pr... 28 1.1
TC14684 28 1.1
TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associ... 27 1.5
TC12459 27 1.5
TC16295 weakly similar to GB|AAM98102.1|22655022|AY139796 At3g23... 27 1.5
TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, part... 27 1.9
TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , p... 27 1.9
TC16830 similar to UP|Q9SDP6 (Q9SDP6) ATP-dependent phosphoenolp... 27 2.5
AV427932 27 2.5
CB826779 27 2.5
AV773558 27 2.5
>TC10392
Length = 444
Score = 173 bits (439), Expect = 1e-44
Identities = 90/107 (84%), Positives = 95/107 (88%), Gaps = 4/107 (3%)
Frame = +3
Query: 2 AAYREPMNVSERAPISSQVP-HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGY 60
AAYREPM + ERAP SSQ+P HSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGY
Sbjct: 126 AAYREPM-MHERAPTSSQIPPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGY 302
Query: 61 LEGNGESERDLEAGERNNDTD---QKPYEEKILVIMAGQDKPTFLAT 104
LE + ESERDLEAGE +D D QKPYEEKILVIMAGQ+KPTFLAT
Sbjct: 303 LENSNESERDLEAGEGKSDQDQKPQKPYEEKILVIMAGQEKPTFLAT 443
>TC16896
Length = 419
Score = 35.8 bits (81), Expect = 0.004
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = +3
Query: 123 DNTSTCTCEHDKDQKSIENMNDEESTVKQGGG 154
DNTSTCTC D+KS+E M+ +++ VKQG G
Sbjct: 6 DNTSTCTC---GDRKSVE-MSTDDAAVKQGSG 89
>TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%)
Length = 592
Score = 35.4 bits (80), Expect = 0.005
Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 1/101 (0%)
Frame = +2
Query: 75 ERNNDTDQKPYEEKILVIMAGQDKPTFLATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDK 134
+R+ ++ Y L+++A T ATP + +T+ S S S+ S C DK
Sbjct: 251 KRSRSCSEEEYLALCLIMLARGGAATTTATPPLQPATAPSGSSRLSY--KCSVC----DK 412
Query: 135 DQKSIENMNDEESTV-KQGGGGGENHVRRTESVETPTTDTS 174
S + + +++ K GGGGE+H S TT +S
Sbjct: 413 AFPSYQALGGHKASHRKHSGGGGEDHSAGATSSAVATTTSS 535
>BP042407
Length = 464
Score = 30.4 bits (67), Expect = 0.17
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Frame = +2
Query: 98 KPTFLATPSMSSSTSTSTSRSSSFG----------DNTSTCTCEHDKDQKSIEN 141
KP F +T S SSS+ +STS+SS+ + ST T H + + ++ N
Sbjct: 80 KPIFPSTFSSSSSSESSTSKSSNISFLSSTTFPKLSHASTTTSRHSQQRSTVVN 241
>AV769903
Length = 228
Score = 28.9 bits (63), Expect = 0.51
Identities = 15/48 (31%), Positives = 24/48 (49%), Gaps = 1/48 (2%)
Frame = -1
Query: 124 NTSTCTCEHDKDQKSIE-NMNDEESTVKQGGGGGENHVRRTESVETPT 170
++S C+ E ++E + N +E T GGG N+V + S T T
Sbjct: 195 SSSNCSYEESPIDSNLEVSSNSKERTYPSEGGGHSNYVASSSSTHTTT 52
>TC18974 weakly similar to PIR|S16321|S16321 light-induced protein CPRF-2 -
parsley {Petroselinum crispum;} , partial (17%)
Length = 507
Score = 28.9 bits (63), Expect = 0.51
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 72 EAGERNNDTDQKPYEEKILVIMAGQDKPTFLATPSMSSSTSTSTSRSSSFGD 123
E G+ N T + +++ + ++ + +A SSTSTS+S SSS GD
Sbjct: 152 EPGKMNRSTSEWAFQQFL------KEASSSVAAEQPCSSTSTSSSSSSSMGD 289
>TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
(52%)
Length = 765
Score = 28.5 bits (62), Expect = 0.66
Identities = 17/44 (38%), Positives = 23/44 (51%)
Frame = -1
Query: 103 ATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEE 146
+T S SSS S ST SSS G +T TC+ S+ + + E
Sbjct: 279 STISPSSSISDSTISSSSSGSSTFTCSS*RSSISSSLSSCFESE 148
>AV416574
Length = 362
Score = 28.5 bits (62), Expect = 0.66
Identities = 17/45 (37%), Positives = 24/45 (52%)
Frame = +3
Query: 94 AGQDKPTFLATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKS 138
+ +D PT L S SSS + +++ S S G TS+ TC Q S
Sbjct: 222 SSRDPPTALVRASPSSSLARASTSSLSVGALTSSKTCRIPLRQSS 356
>BP056955
Length = 581
Score = 28.5 bits (62), Expect = 0.66
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1
Query: 102 LATPSMSSSTSTSTSRSSSFGDNTSTCT 129
L+ S S+STSTSTS S+S +TST T
Sbjct: 169 LSPISTSTSTSTSTSTSTSTSISTSTST 252
Score = 26.9 bits (58), Expect = 1.9
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 101 FLATPSMSSSTSTSTSRSSSFGDNTSTCT 129
F+ +S+STSTSTS S+S + ST T
Sbjct: 160 FIHLSPISTSTSTSTSTSTSTSTSISTST 246
>TC17157 similar to UP|CAD27462 (CAD27462) Nucleosome assembly protein
1-like protein 3, partial (81%)
Length = 1298
Score = 27.7 bits (60), Expect = 1.1
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -3
Query: 104 TPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIEN 141
+PS SSS+S+S+S SSS ++S+ + SI +
Sbjct: 876 SPSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSISS 763
Score = 25.4 bits (54), Expect = 5.6
Identities = 14/37 (37%), Positives = 21/37 (55%)
Frame = -3
Query: 102 LATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKS 138
L PS SSS+S+S+S SSS ++S+ + S
Sbjct: 888 LLFPSPSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSS 778
>TC14684
Length = 757
Score = 27.7 bits (60), Expect = 1.1
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -1
Query: 100 TFLATPSMSSSTST--STSRSSSFGDNTSTCTCEHDKDQKSIENMN 143
TFLA + SSS+S+ S+SRSS G C +H+ + +++++
Sbjct: 148 TFLAFSASSSSSSSS*SSSRSSVTGKRGMDCGLDHE*KEDFLDHLD 11
>TC14766 similar to UP|Q7XXR8 (Q7XXR8) Nascent polypeptide associated
complex alpha chain, partial (58%)
Length = 600
Score = 27.3 bits (59), Expect = 1.5
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -1
Query: 99 PTFLATPSMSSSTSTSTSRSSSFGDNTSTCTC 130
P+ L++ S SSS+S+S+S SSS ++S C
Sbjct: 201 PSMLSSSSSSSSSSSSSSSSSSTTGSSSWIFC 106
>TC12459
Length = 797
Score = 27.3 bits (59), Expect = 1.5
Identities = 20/52 (38%), Positives = 23/52 (43%), Gaps = 6/52 (11%)
Frame = +3
Query: 126 STCTCEHDKDQKSIEN------MNDEESTVKQGGGGGENHVRRTESVETPTT 171
STC E D+ I+ +DEE GGGGGE RTE V T
Sbjct: 45 STCGGEDDRPSPEIQQEQKRRGSSDEEGEGGGGGGGGEG---RTEVVVVDET 191
>TC16295 weakly similar to GB|AAM98102.1|22655022|AY139796 At3g23700/MYM9_3
{Arabidopsis thaliana;}, partial (31%)
Length = 751
Score = 27.3 bits (59), Expect = 1.5
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = +3
Query: 60 YLEGNGESERDLEAGERNNDTDQKPYEEKILVIMAGQDKPTFLATPSMSSSTSTSTSRSS 119
+LE + E +L E NN +P I G +PS S S +S+S SS
Sbjct: 12 FLEPKEKEESELVFLELNN----QPTRMSIFCATLGSFTSISFVSPSQSQSDPSSSSSSS 179
Query: 120 SFGDNTSTCTCEH 132
S S C H
Sbjct: 180 SSSSLFSFRKCPH 218
>TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, partial (4%)
Length = 622
Score = 26.9 bits (58), Expect = 1.9
Identities = 15/28 (53%), Positives = 18/28 (63%)
Frame = +1
Query: 102 LATPSMSSSTSTSTSRSSSFGDNTSTCT 129
L TPS SS + +STS SSS +N S T
Sbjct: 106 LITPSTSSISISSTSTSSSSNNNRSIFT 189
>TC14994 similar to UP|O82469 (O82469) Protein phosphatase-2C , partial
(89%)
Length = 1672
Score = 26.9 bits (58), Expect = 1.9
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -2
Query: 99 PTFLATPSMSSSTSTSTSRSSSFGDNTS 126
P F A+ S SSS+S+S+S SSS ++S
Sbjct: 243 PFFSASSSSSSSSSSSSSSSSSTSSSSS 160
Score = 26.6 bits (57), Expect = 2.5
Identities = 13/30 (43%), Positives = 21/30 (69%)
Frame = -2
Query: 98 KPTFLATPSMSSSTSTSTSRSSSFGDNTST 127
+P F + S SSS+S+S+S SSS ++S+
Sbjct: 249 QPPFFSASSSSSSSSSSSSSSSSSTSSSSS 160
>TC16830 similar to UP|Q9SDP6 (Q9SDP6) ATP-dependent phosphoenolpyruvate
carboxykinase (Fragment), partial (29%)
Length = 565
Score = 26.6 bits (57), Expect = 2.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 139 IENMNDEESTVKQGGGGGENHVR 161
+ENM + ESTV G GG VR
Sbjct: 505 VENMGEFESTVTDGNGGSNVMVR 437
>AV427932
Length = 425
Score = 26.6 bits (57), Expect = 2.5
Identities = 15/32 (46%), Positives = 22/32 (67%)
Frame = +1
Query: 89 ILVIMAGQDKPTFLATPSMSSSTSTSTSRSSS 120
I+ ++ G KP+F +SSS+STS+S SSS
Sbjct: 37 IMYLLTG--KPSFTPKLVLSSSSSTSSSSSSS 126
>CB826779
Length = 469
Score = 26.6 bits (57), Expect = 2.5
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 105 PSMSSSTSTSTSRSSSFGDNTSTCT 129
PS SSS+S+S+S SSS TS+ T
Sbjct: 272 PSSSSSSSSSSSSSSSASSCTSSTT 198
>AV773558
Length = 469
Score = 26.6 bits (57), Expect = 2.5
Identities = 17/44 (38%), Positives = 26/44 (58%)
Frame = +2
Query: 106 SMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTV 149
S SSS+S+S+S SSS NT + + + S++N ES+V
Sbjct: 323 SSSSSSSSSSSSSSSLYTNTKSSS---NSSSPSLKNKPSGESSV 445
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.308 0.126 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,999,235
Number of Sequences: 28460
Number of extensions: 42274
Number of successful extensions: 662
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of query: 174
length of database: 4,897,600
effective HSP length: 84
effective length of query: 90
effective length of database: 2,506,960
effective search space: 225626400
effective search space used: 225626400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC136954.11