TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136953.9 - phase: 0 
         (567 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10422 similar to UP|Q944P7 (Q944P7) AT4g30920/F6I18_170, parti...   453  e-128
AV419035                                                              250  4e-67
BP046003                                                               33  0.095
TC9760                                                                 29  1.8
AV422403                                                               27  6.8

>TC10422 similar to UP|Q944P7 (Q944P7) AT4g30920/F6I18_170, partial (47%)
          Length = 874

 Score =  453 bits (1166), Expect = e-128
 Identities = 237/292 (81%), Positives = 260/292 (88%)
 Frame = +3

Query: 56  PTNIEAPKISFSATDVDVTEWKGDILAVGVTEKDLTRDAKSRFENSILNKIDLKLDGLLS 115
           P N+E  KISF+  DVDVTEWKGDILAVGV EKDL RD K RFEN ILNKID KL GLL+
Sbjct: 6   PANVETHKISFTPKDVDVTEWKGDILAVGVAEKDLVRDGKLRFENVILNKIDSKLGGLLA 185

Query: 116 EASSEEDFSGKVGQSTVVRIKGLGSKRVGLIGLGQLPSTTALYKGLGEAVVAVAKSAQAS 175
           EAS+EEDFSGK GQSTV+R+ GLG+KRV LIGLG   S+TA +KGLGEAVVA AKS+QAS
Sbjct: 186 EASAEEDFSGKTGQSTVLRVTGLGAKRVSLIGLG---SSTAPFKGLGEAVVAAAKSSQAS 356

Query: 176 NVAIVLASSEGLSSESKLSTAYAIASGAVLGLFEDQRYKSESKKPAVRSIDIIGLGTGPD 235
           +VA+VLASS+GLS+ESKLS+AYAIASG +LG FED RYKSESKK A+RS+DIIGLGTGP+
Sbjct: 357 SVAVVLASSDGLSAESKLSSAYAIASGLMLGFFEDNRYKSESKKLALRSVDIIGLGTGPE 536

Query: 236 LEKKLKYAGDVSFGIIFGRELVNSPANVLTPGVLAEEASKVASTYSDVFTAKILDADQCK 295
           LEKKLKYAG VS GIIFGRELVNSPANVLTPG LAEEASKVAS+YSDVFTA IL+A+QCK
Sbjct: 537 LEKKLKYAGYVSSGIIFGRELVNSPANVLTPGGLAEEASKVASSYSDVFTATILNAEQCK 716

Query: 296 ELKMGSYLGVAAASANPPRFIHLTYKPPSGSVKVKLALVGKGLTFDSGGYNI 347
           ELKMGSYLGVAAASANPP FIHL YKPP+G V VKLALVGKGLTFDSGGYNI
Sbjct: 717 ELKMGSYLGVAAASANPPHFIHLRYKPPTGPVNVKLALVGKGLTFDSGGYNI 872


>AV419035 
          Length = 407

 Score =  250 bits (639), Expect = 4e-67
 Identities = 125/135 (92%), Positives = 127/135 (93%)
 Frame = +1

Query: 252 FGRELVNSPANVLTPGVLAEEASKVASTYSDVFTAKILDADQCKELKMGSYLGVAAASAN 311
           FGRELVNSPANVLTPGVLAEEASK+ASTYSDVFTAKILDA+QCKELKMGSYL VAAASAN
Sbjct: 1   FGRELVNSPANVLTPGVLAEEASKIASTYSDVFTAKILDAEQCKELKMGSYLAVAAASAN 180

Query: 312 PPRFIHLTYKPPSGSVKVKLALVGKGLTFDSGGYNIKTGPGCSIELMKFDMGGSAAVLGA 371
           PP FIHL YKPPSG V  KLALVGKGLTFDSGGYNIKTGPGC IELMKFDMGGSAAV GA
Sbjct: 181 PPHFIHLCYKPPSGPVNAKLALVGKGLTFDSGGYNIKTGPGCLIELMKFDMGGSAAVFGA 360

Query: 372 AKALGQIKPLGVEVH 386
           AKALGQIKPLGVEVH
Sbjct: 361 AKALGQIKPLGVEVH 405


>BP046003 
          Length = 528

 Score = 33.5 bits (75), Expect = 0.095
 Identities = 19/39 (48%), Positives = 26/39 (65%), Gaps = 3/39 (7%)
 Frame = -3

Query: 87  EKDLTRDAKSRFENS---ILNKIDLKLDGLLSEASSEED 122
           E+    + K+  E+S   ILN +D KL+GLL EASSEE+
Sbjct: 214 EEKKPEERKAHLESSSYIILNSLDSKLNGLLVEASSEEN 98


>TC9760 
          Length = 556

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 21/73 (28%), Positives = 31/73 (41%)
 Frame = -1

Query: 160 GLGEAVVAVAKSAQASNVAIVLASSEGLSSESKLSTAYAIASGAVLGLFEDQRYKSESKK 219
           GL      V+KSA AS  ++ +ASS   +  S      +I     LG F+  +Y    + 
Sbjct: 367 GLPRTFTKVSKSAIASVKSLFMASSSSYAKVSAFLFTLSITLCLRLGKFDIAKYPPAEQI 188

Query: 220 PAVRSIDIIGLGT 232
           P  R   I+   T
Sbjct: 187 PRARRSSIVVCST 149


>AV422403 
          Length = 465

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 27/86 (31%), Positives = 35/86 (40%)
 Frame = +1

Query: 55  HPTNIEAPKISFSATDVDVTEWKGDILAVGVTEKDLTRDAKSRFENSILNKIDLKLDGLL 114
           H  +IE  KI        VTEWK +     +T +D+T D K     S L+  +    GL 
Sbjct: 73  HQMDIETGKI--------VTEWKFEKDGADITMRDITNDTK----GSQLDPSESTFLGLD 216

Query: 115 SEASSEEDFSGKVGQSTVVRIKGLGS 140
                + D   K G   V  I G GS
Sbjct: 217 DNRLCQWDMREKKGM--VQNIAGSGS 288


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.314    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,859,846
Number of Sequences: 28460
Number of extensions: 91641
Number of successful extensions: 320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of query: 567
length of database: 4,897,600
effective HSP length: 95
effective length of query: 472
effective length of database: 2,193,900
effective search space: 1035520800
effective search space used: 1035520800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)