BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136841.8 + phase: 0 /pseudo
(119 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP083809 35 0.004
TC14744 UP|C7DB_LOTJA (O22307) Cytochrome P450 71D11 (Fragment)... 28 0.31
TC18808 similar to UP|Q940S9 (Q940S9) AT3g57890/T10K17_100, part... 27 0.70
BP051401 27 0.70
AU252098 26 1.5
TC14894 weakly similar to UP|Q9LD82 (Q9LD82) ESTs AU029648, part... 25 2.6
TC17879 similar to AAQ56782 (AAQ56782) At2g27460, partial (32%) 25 3.5
TC20234 weakly similar to UP|O64785 (O64785) T1F9.16 (At1g61350/... 25 3.5
TC10989 25 4.5
AV765024 24 5.9
TC17354 weakly similar to UP|Q9LS15 (Q9LS15) Gb|AAF26010.1, part... 24 7.7
TC10863 similar to PIR|T49050|T49050 protein kinase C inhibitor-... 24 7.7
>BP083809
Length = 369
Score = 34.7 bits (78), Expect = 0.004
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 5 LHGPLHAAGYFLNPQFHSSHGFRD-DIEGKGGLH 37
LH PLHAAG+FLNP+++ + D D E + G++
Sbjct: 266 LHRPLHAAGHFLNPEYYYNDSELDYDFEVQKGVY 367
>TC14744 UP|C7DB_LOTJA (O22307) Cytochrome P450 71D11 (Fragment) , complete
Length = 1753
Score = 28.5 bits (62), Expect = 0.31
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 83 SPFGKGLPELQKFVSCIKLDMKFLW 107
S FGK E ++F+SC++ MK W
Sbjct: 585 SAFGKRYMEQEEFISCVREVMKLAW 659
>TC18808 similar to UP|Q940S9 (Q940S9) AT3g57890/T10K17_100, partial (44%)
Length = 854
Score = 27.3 bits (59), Expect = 0.70
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 25 GFRDDIEGKGGLHDCITRMVADPEERAKIEIQLDDFDKWANDMGYSVAAGNEVPSVWWSP 84
G R DI + G+ + R R +E + + + N +G+S ++GNE SV
Sbjct: 475 G*RPDISNRSGI---LVRPGKQSLIRLNVEEENQIMNIYTNGIGFSESSGNERLSVGVED 305
Query: 85 FGKGL 89
GKG+
Sbjct: 304 GGKGI 290
>BP051401
Length = 507
Score = 27.3 bits (59), Expect = 0.70
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 82 WSPFGKGLPELQKFVSCIKLDMKFL 106
WSP G GL +L ++ +KLDM +L
Sbjct: 112 WSPIGWGLRKLFVVLASLKLDMFYL 38
>AU252098
Length = 350
Score = 26.2 bits (56), Expect = 1.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 6 HGPLHAAGYFLNPQFHSSHGFRDDIEGKGGLH 37
HGP H + NP H SH + +GG H
Sbjct: 320 HGPHHYRHHQENPPTHQSHSNSTHHQQEGGPH 225
>TC14894 weakly similar to UP|Q9LD82 (Q9LD82) ESTs AU029648, partial (84%)
Length = 982
Score = 25.4 bits (54), Expect = 2.6
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -3
Query: 60 FDKWANDMGYSVAAGNEVPSVWW 82
+ +W N +GY ++ ++ VWW
Sbjct: 797 YSRWPNTLGYMLSRSSDGFWVWW 729
>TC17879 similar to AAQ56782 (AAQ56782) At2g27460, partial (32%)
Length = 953
Score = 25.0 bits (53), Expect = 3.5
Identities = 10/17 (58%), Positives = 11/17 (63%)
Frame = +1
Query: 82 WSPFGKGLPELQKFVSC 98
WSP G LP L F+SC
Sbjct: 835 WSPAGGWLPLLYLFISC 885
>TC20234 weakly similar to UP|O64785 (O64785) T1F9.16 (At1g61350/T1F9_16),
partial (15%)
Length = 1036
Score = 25.0 bits (53), Expect = 3.5
Identities = 20/77 (25%), Positives = 29/77 (36%), Gaps = 19/77 (24%)
Frame = -3
Query: 20 FHSSHGFRDDIEGKGGLHDCITRMVADP--------------EERAKIEIQLDDFDKW-- 63
FH H F G LH C + A +E A+ ++Q DFDKW
Sbjct: 290 FHCGHRFGVPRSGSA-LHRCFIQWEASDAE*FGRGVREARWVDEEARGDLQDGDFDKWVC 114
Query: 64 ---ANDMGYSVAAGNEV 77
+ +S G+E+
Sbjct: 113 ARCVETVSWSFQRGHEI 63
>TC10989
Length = 607
Score = 24.6 bits (52), Expect = 4.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 74 GNEVPSVWWSPFGKGLPELQKFVSCI 99
G + P + WSPF +Q+ SC+
Sbjct: 295 GIQKPFILWSPFKTAASNIQQIHSCL 372
>AV765024
Length = 343
Score = 24.3 bits (51), Expect = 5.9
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +2
Query: 3 RTLHGPLHAAGYFLNPQFHSSHGFRDD 29
R +H PL + + P H HG D
Sbjct: 176 RQIHNPLRVTPFIIIPSNHLGHGIFHD 256
>TC17354 weakly similar to UP|Q9LS15 (Q9LS15) Gb|AAF26010.1, partial (24%)
Length = 638
Score = 23.9 bits (50), Expect = 7.7
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -2
Query: 34 GGLHDCITRM 43
GGLHDCI+R+
Sbjct: 562 GGLHDCISRV 533
>TC10863 similar to PIR|T49050|T49050 protein kinase C inhibitor-like
protein - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (88%)
Length = 744
Score = 23.9 bits (50), Expect = 7.7
Identities = 8/24 (33%), Positives = 13/24 (53%)
Frame = -3
Query: 16 LNPQFHSSHGFRDDIEGKGGLHDC 39
+NP H S ++ +GG H+C
Sbjct: 466 MNPFLHISQEASPSVDPQGGAHEC 395
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.333 0.149 0.525
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,318,520
Number of Sequences: 28460
Number of extensions: 29889
Number of successful extensions: 147
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of query: 119
length of database: 4,897,600
effective HSP length: 79
effective length of query: 40
effective length of database: 2,649,260
effective search space: 105970400
effective search space used: 105970400
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)
Medicago: description of AC136841.8