BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136840.7 - phase: 0 /pseudo
(638 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18710 159 1e-39
BP085058 99 2e-21
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p... 81 6e-16
AV780705 58 5e-09
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%) 56 2e-08
AV767121 35 0.037
TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine liga... 30 1.6
BP065135 29 2.6
BP062487 28 3.5
TC15332 similar to UP|PPA1_LYCES (P27061) Acid phosphatase precu... 28 3.5
AV778863 28 5.9
AU089601 28 5.9
TC8866 28 5.9
TC14159 homologue to UP|ATP2_HEVBR (P29685) ATP synthase beta ch... 27 7.7
>TC18710
Length = 843
Score = 159 bits (402), Expect = 1e-39
Identities = 86/234 (36%), Positives = 128/234 (53%), Gaps = 1/234 (0%)
Frame = +2
Query: 238 KKKVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLI 297
+KK+ + + G DG + +F+++ +V D V + + I++TL+
Sbjct: 137 QKKLRLLFFLLETSQPRGMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLV 316
Query: 298 ALIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQSSFLPGRSTTDN 357
LIPKV P + FRPIS C +YK+I+K+ V RL+ + ++I P QS F+ GR DN
Sbjct: 317 TLIPKVPHPESINQFRPISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDN 496
Query: 358 AIVLQEVIHYM-RISKKKKGYVAFKIDLEKAFDNVNWDFLRSCLCDFGFPDTTIKLIMHC 416
+++QE H + R + + K+D+ KA+D V W FL S L FGF +K+IM
Sbjct: 497 LLIVQEAFHAINRPGALGRNHSIIKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMIL 676
Query: 417 VTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLFILCMEKLSSAINNAVQQGS 470
V+ S++ NG P P GLRQGDP SPYLF+ ME LS I N+ G+
Sbjct: 677 VSGVSYNYKINGVVGPKLLPQRGLRQGDPFSPYLFLFTMEVLSLLIQNSFNMGN 838
>BP085058
Length = 452
Score = 99.0 bits (245), Expect = 2e-21
Identities = 48/95 (50%), Positives = 65/95 (67%)
Frame = +2
Query: 542 LTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALAS 601
+ SI+ I T ++ KY+ FPI +G K DF+F +D++ RLA + LLNKP RL LA
Sbjct: 92 MVSITSIPFTDNIGKYMSFPIHQGHV*KEDFVFTLDRVISRLAC*KAYLLNKPARLTLAK 271
Query: 602 FVLSSISTYYMQINWLPQSVCDNIDQVTRNFIWRD 636
VLS+IS Y MQ+NWLPQS+CD I V R+F+W +
Sbjct: 272 PVLSAISMYVMQLNWLPQSICDQICTVVRHFVWEN 376
>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
(14%)
Length = 592
Score = 80.9 bits (198), Expect = 6e-16
Identities = 40/104 (38%), Positives = 62/104 (59%)
Frame = -3
Query: 240 KVTAALHSTKPYKAPGPDGFHCIFFKQYSHIVGDDVFNLATSTFLTSHFDPSISDTLIAL 299
++ A+ S KAPG DG + +F++Q IV +DV N F +++TL+ L
Sbjct: 317 EIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDVNNAILDFFDHGELPVELNETLVTL 138
Query: 300 IPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGP 343
IPK+ + FRPIS C+ IYK+I+K++V RL+P + N+I P
Sbjct: 137 IPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLKPDMVNLISP 6
>AV780705
Length = 524
Score = 57.8 bits (138), Expect = 5e-09
Identities = 25/79 (31%), Positives = 47/79 (58%)
Frame = -2
Query: 557 YLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALASFVLSSISTYYMQINW 616
YLG P I GR K ++I +K++++L W+ LLN+ G+ L ++ +I +Y M I
Sbjct: 484 YLGLPAIWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAIIQAIPSYAMTIVH 305
Query: 617 LPQSVCDNIDQVTRNFIWR 635
P++ C+++ + +F W+
Sbjct: 304 FPKTFCNSLYALVADFWWK 248
>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
Length = 912
Score = 56.2 bits (134), Expect = 2e-08
Identities = 36/126 (28%), Positives = 63/126 (49%)
Frame = -3
Query: 482 KLSHLLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDKINT 541
++SHL FAD++++F+ + I ++ F SGL N KS F V + N
Sbjct: 376 EISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFIL--VKETTKNQ 203
Query: 542 LTSISGIRCTTSLDKYLGFPIIKGRPKKSDFLFIIDKMQKRLASWQNKLLNKPGRLALAS 601
+T++ G + + LG P + + K SD ++D+ +L W + L+ GRL L +
Sbjct: 202 ITNMLGYKEGKLPVR*LGVPQLTTKLKASDCKVLVDRKPSKLQHWTGRSLSYAGRLQLIN 23
Query: 602 FVLSSI 607
+L S+
Sbjct: 22 SILFSM 5
>AV767121
Length = 525
Score = 35.0 bits (79), Expect = 0.037
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 583 LASWQNKLLNKPGRLALASFVLSSISTYYMQINWLPQSVCDNIDQVTRNFIWRDS 637
L+ W+ K ++ GR+ L VL+++ +++ LP V + ++ RNF+W S
Sbjct: 2 LSKWKQKTVSFGGRIFLIQSVLTALPLFFLSFFKLPIGVGKSCVRLMRNFLWGGS 166
>TC12836 GB|CAA71302.1|2292921|LJPANC pantoate--beta-alanine ligase {Lotus
corniculatus var. japonicus;} , complete
Length = 1310
Score = 29.6 bits (65), Expect = 1.6
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = +1
Query: 486 LLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKS 526
LLF D ++F +A + + IR++ + GL INL KS
Sbjct: 1102 LLFVGDGIIFCRATTPEENKIREILLMYQSAPGLLINLDKS 1224
>BP065135
Length = 492
Score = 28.9 bits (63), Expect = 2.6
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 404 GFPDTTIKLIMHCVTSSSFSILWNGNRLPPFEPTHGLRQGDPLSPYLF 451
GF T HC +S + I W GN+ + Q + L P+ F
Sbjct: 131 GF*SRTFFHTSHCKSSVASGIFWQGNKARTLVDVELMEQPEQLKPFSF 274
>BP062487
Length = 533
Score = 28.5 bits (62), Expect = 3.5
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = -1
Query: 452 ILCMEKLSSAINNAVQQGSWEPIHVSNPGPKLSHLLFADDVLLFTK 497
I+ LS A +N + + + EP+ SNP P H L + L TK
Sbjct: 275 IVASPSLSLARSNHISRAASEPLEYSNPYPV*HHTLSSTAQLTMTK 138
>TC15332 similar to UP|PPA1_LYCES (P27061) Acid phosphatase precursor 1 ,
partial (89%)
Length = 1040
Score = 28.5 bits (62), Expect = 3.5
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = -2
Query: 299 LIPKVDPPLTYKDFRPISLCNIIYKIITKVLVHRLRPILNNIIGPYQS 346
L P + P+ K+ +P+S+C+II KI K L++ P + +II + +
Sbjct: 535 LHPTIKLPMV-KNLQPVSMCSIIGKIREKRLINVENPRVFSIITKFNT 395
>AV778863
Length = 441
Score = 27.7 bits (60), Expect = 5.9
Identities = 17/32 (53%), Positives = 17/32 (53%)
Frame = -3
Query: 21 LQASL*PQSSPSPFRWSSFCSRTKAFPL*SCL 52
L S *P S P PFR SSF SR L S L
Sbjct: 343 LHGSQ*PWSPPHPFRGSSFVSRNYMVALLSYL 248
>AU089601
Length = 399
Score = 27.7 bits (60), Expect = 5.9
Identities = 16/53 (30%), Positives = 26/53 (48%), Gaps = 4/53 (7%)
Frame = +1
Query: 413 IMHCVTSSSFSILWNGNRLP----PFEPTHGLRQGDPLSPYLFILCMEKLSSA 461
I HC++S FS++W P P T G ++ Y F++C + SS+
Sbjct: 172 IFHCLSSL*FSLVWITTTPPQSNQPKVQTFYTEIGTKIAKYSFMICKIEASSS 330
>TC8866
Length = 754
Score = 27.7 bits (60), Expect = 5.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 401 CDFGFPDTTIKLIMHCVTSSSFSILWNGNRLPP 433
C P T+ ++M +SS ++W+G+ LPP
Sbjct: 412 CSILSPSTSSLMVMGLSFTSSSGLVWSGSPLPP 314
>TC14159 homologue to UP|ATP2_HEVBR (P29685) ATP synthase beta chain,
mitochondrial precursor , partial (93%)
Length = 2056
Score = 27.3 bits (59), Expect = 7.7
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 486 LLFADDVLLFTKANSTQLRFIRDLFDRFSKFSGLKINLHKSRAFYSSGVTQDKINTLTSI 545
LLF D++ FT+ANS + L R G + L +T K ++TS+
Sbjct: 1038 LLFVDNIFRFTQANSE----VSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSV 1205
Query: 546 SGI 548
I
Sbjct: 1206 QAI 1214
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.350 0.156 0.550
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,364,166
Number of Sequences: 28460
Number of extensions: 188794
Number of successful extensions: 1732
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of query: 638
length of database: 4,897,600
effective HSP length: 96
effective length of query: 542
effective length of database: 2,165,440
effective search space: 1173668480
effective search space used: 1173668480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC136840.7