TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136840.1 + phase: 0 /pseudo
         (1308 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP060613                                                               95  8e-20
AV780705                                                               55  9e-08
AV780221                                                               53  4e-07
AV767121                                                               46  3e-05
AV426437                                                               29  5.5

>BP060613 
          Length = 378

 Score = 94.7 bits (234), Expect = 8e-20
 Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
 Frame = +1

Query: 821 SMIS--RFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNE 878
           SM+S  + WW SK G R +HW + D + + K  GG+GF+ F+  N A+L+KQ WRILHN 
Sbjct: 22  SMLSGCQVWWSSK-GTRGVHWRKWDLLTELKDEGGLGFKDFEIQNQALLAKQAWRILHNP 198

Query: 879 ELLLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIR 935
           + L    LK  YFP  DFL+ +     S+ W S++H + E++ K G W++G G  ++
Sbjct: 199 DALWVQILKALYFPHHDFLQTTKRTGASWVWSSLLHGR-ELLLKQGQWQLGSGETVQ 366


>AV780705 
          Length = 524

 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
 Frame = -2

Query: 812 PNG*CEHIESMISRFWWGSKQGERKIHWIR*--DEVCKNKKVGGMGFRTFKELNLAMLSK 869
           P   C  + ++++ FWW S QGE  + +      +   +K+ GG+GFR  +  NLA L++
Sbjct: 301 PKTFCNSLYALVADFWWKS-QGEGAVEYTGAVGTK*PLSKEKGGVGFRDLRTQNLAFLAR 125

Query: 870 QGWRILHNEELLLS*CLKGRYFP 892
           Q WR+L N E L    +K  YFP
Sbjct: 124 QAWRVLTNPEALWVRVMKSLYFP 56


>AV780221 
          Length = 461

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 7/161 (4%)
 Frame = +3

Query: 787 LCLLQQEMY*LKLWSKKSLPM**VVPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVC 846
           LCL++  +  L L+    LP   +   G   ++ +    F+    +G +KI W++   VC
Sbjct: 3   LCLIRSVLIALPLFH---LPFFKLPTGGFYTNVNN**DPFFGREVEGGKKIAWVKWSTVC 173

Query: 847 KNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNPS 906
           + K  GG+G +     N A+L K  WR+L   + L    L  +Y       K ++  + S
Sbjct: 174 RPKDEGGLGVQNLGLFNKALLGKWRWRMLKERDGLWYKVLLIKY-------KNAIPQSAS 332

Query: 907 YTWRSIMHAKFEVIDKVGVW-------RVGDGRNIRVWKDN 940
             W  +    FE  D  G W       R+G+G  ++ W +N
Sbjct: 333 SWWNDLHSTCFE--DGGGGWMQRGLCRRIGEGTEVKFWNEN 449


>AV767121 
          Length = 525

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 33/60 (55%)
 Frame = +2

Query: 822 MISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELL 881
           ++  F WG  + E KI  ++  +VCK K++GG+G +     N A+L K  WR L   + L
Sbjct: 137 LMRNFLWGGSENENKIA*VKWTDVCKPKELGGLGIKDLFTFNKALLGK*RWRYLTEPDSL 316


>AV426437 
          Length = 303

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/30 (36%), Positives = 19/30 (62%)
 Frame = +1

Query: 832 QGERKIHWIR*DEVCKNKKVGGMGFRTFKE 861
           + +RKI WI  + +CK K + G+G + + E
Sbjct: 214 ENQRKIAWINWETICKPKWLRGLGVKNWGE 303


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.358    0.160    0.572 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,548,374
Number of Sequences: 28460
Number of extensions: 345774
Number of successful extensions: 4905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3186
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 3888
length of query: 1308
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1207
effective length of database: 2,023,140
effective search space: 2441929980
effective search space used: 2441929980
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 61 (28.1 bits)