BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136838.2 - phase: 2
(90 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana ... 172 1e-44
TC19186 homologue to emb|Z18289.1|PPC16SRNA Palmaria palmata Chl... 31 0.043
AV776603 28 0.28
TC14158 homologue to gb|M75722.1|ALSCP23SA Alnus incana chloropl... 27 0.62
TC8864 25 1.8
AU251869 25 1.8
TC8360 weakly similar to UP|O22940 (O22940) At2g41800 protein (A... 25 2.4
TC19448 homologue to UP|O76915 (O76915) NG3 protein, partial (11%) 25 2.4
BP066148 25 2.4
TC9953 similar to GB|CAD35362.1|21535744|ATH490171 FK506 binding... 25 2.4
TC12903 weakly similar to UP|ALA9_ARATH (Q9SX33) Potential phosp... 25 3.1
TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-... 25 3.1
TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding ... 25 3.1
TC15711 weakly similar to UP|MID2_YEAST (P36027) Mating process ... 25 3.1
TC17082 25 3.1
BP058189 24 4.0
TC11170 weakly similar to UP|Q9FKT4 (Q9FKT4) RNA-binding protein... 24 4.0
TC19667 similar to UP|O24078 (O24078) Protein phosphatase 2C, pa... 24 4.0
AV767360 24 4.0
BP057603 24 5.3
>TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana large
subunit 26S ribosomal RNA gene, partial sequence,
complete
Length = 6006
Score = 172 bits (435), Expect = 1e-44
Identities = 82/90 (91%), Positives = 83/90 (92%)
Frame = -1
Query: 1 LGRNLPPDWGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNSN 60
LGRNLPPD GCIPKQPDSPT PRGATGS HNGALTLSGAPFQGTWARSA EDASP YNS+
Sbjct: 2901 LGRNLPPD*GCIPKQPDSPTAPRGATGSGHNGALTLSGAPFQGTWARSATEDASPDYNSD 2722
Query: 61 AEGDRFSWWAYPGSLAVTKGILVSFFSSAY 90
A GDRFSWWA PGSLAVTKGILVSFFSSAY
Sbjct: 2721 ALGDRFSWWALPGSLAVTKGILVSFFSSAY 2632
>TC19186 homologue to emb|Z18289.1|PPC16SRNA Palmaria palmata Chloroplast
for 16SrRNA gene, partial (10%)
Length = 563
Score = 30.8 bits (68), Expect = 0.043
Identities = 14/21 (66%), Positives = 15/21 (70%)
Frame = -1
Query: 70 AYPGSLAVTKGILVSFFSSAY 90
A P SLA TKGI +FFSS Y
Sbjct: 230 AVPASLAATKGIAFAFFSSGY 168
>AV776603
Length = 359
Score = 28.1 bits (61), Expect = 0.28
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +2
Query: 7 PDWGCIPKQPDSPTTPRG---ATGSEHNGALTLSGAPFQGTWARSAAEDASPYYNS--NA 61
P W K DSP T G S +G LS A + G+ + ++ D +N+ N
Sbjct: 104 PGWSSAKKSNDSPATGWGQGSGVKSGSDGGANLSSA-WGGSKSGTSNTDVGAGWNNKPNK 280
Query: 62 EGDRFSWWAYPG 73
+G++ S W G
Sbjct: 281 DGNKASGWGQAG 316
>TC14158 homologue to gb|M75722.1|ALSCP23SA Alnus incana chloroplast 23S
ribosomal RNA (23S rRNA) gene, partial (87%)
Length = 2528
Score = 26.9 bits (58), Expect = 0.62
Identities = 21/64 (32%), Positives = 27/64 (41%)
Frame = -3
Query: 27 GSEHNGALTLSGAPFQGTWARSAAEDASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFF 86
GSEH + + S A +S + F+ A P SLA T GI +FF
Sbjct: 447 GSEHKLVMLSATGLSPSRVRHSTASPSSTTLV*LSHNPVFTV*AAPISLAATTGIAFAFF 268
Query: 87 SSAY 90
SS Y
Sbjct: 267 SSGY 256
>TC8864
Length = 658
Score = 25.4 bits (54), Expect = 1.8
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 9 WGCIPKQPDS--PTTPRGATGSE 29
WG P + P+TP GATGSE
Sbjct: 54 WGSPPPTENGAGPSTPSGATGSE 122
>AU251869
Length = 284
Score = 25.4 bits (54), Expect = 1.8
Identities = 13/51 (25%), Positives = 22/51 (42%), Gaps = 10/51 (19%)
Frame = +3
Query: 44 TWARSAAEDASP----------YYNSNAEGDRFSWWAYPGSLAVTKGILVS 84
TWA S SP +++ N +G + W + G + G+L+S
Sbjct: 60 TWAASPISSESPKLEGLQKHVAFFDLNQDGVIYPWETFKGLRLIGSGVLLS 212
>TC8360 weakly similar to UP|O22940 (O22940) At2g41800 protein
(At2g41800/T11A7.10), partial (82%)
Length = 1366
Score = 25.0 bits (53), Expect = 2.4
Identities = 7/9 (77%), Positives = 9/9 (99%)
Frame = -2
Query: 2 GRNLPPDWG 10
G+N+PPDWG
Sbjct: 306 GKNMPPDWG 280
>TC19448 homologue to UP|O76915 (O76915) NG3 protein, partial (11%)
Length = 593
Score = 25.0 bits (53), Expect = 2.4
Identities = 20/67 (29%), Positives = 28/67 (40%), Gaps = 15/67 (22%)
Frame = -2
Query: 9 WGCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQGT---------------WARSAAEDA 53
W +P DSP P HN L LS +P + W RS++ +
Sbjct: 184 WT*LPHHWDSPKWP------SHN-TLLLSHSPNEPLSSTLRSC*EKAGSLDWLRSSSGNT 26
Query: 54 SPYYNSN 60
SPYY+S+
Sbjct: 25 SPYYHSH 5
>BP066148
Length = 477
Score = 25.0 bits (53), Expect = 2.4
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = -2
Query: 33 ALTLSGAPFQGTWARSAAEDASPYYNSNA 61
+L +S AP +GT +RS E A SNA
Sbjct: 458 SLEVSDAPAEGTHSRSLTERALDLIRSNA 372
>TC9953 similar to GB|CAD35362.1|21535744|ATH490171 FK506 binding protein 1
{Arabidopsis thaliana;} , partial (29%)
Length = 481
Score = 25.0 bits (53), Expect = 2.4
Identities = 12/34 (35%), Positives = 15/34 (43%)
Frame = -2
Query: 10 GCIPKQPDSPTTPRGATGSEHNGALTLSGAPFQG 43
G +P P GA + H GA T + A F G
Sbjct: 339 GPVPTSLSQKARPEGAAVNSHGGASTAAEAGFGG 238
>TC12903 weakly similar to UP|ALA9_ARATH (Q9SX33) Potential
phospholipid-transporting ATPase 9 (Aminophospholipid
flippase 9) , partial (14%)
Length = 746
Score = 24.6 bits (52), Expect = 3.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 35 TLSGAPFQGTWARSAAEDAS 54
T S PF GTW R+ +E S
Sbjct: 525 TSSIVPFHGTWERTTSESLS 466
>TC8032 similar to UP|Q9M0B6 (Q9M0B6) Nucleotide sugar epimerase-like
protein, partial (97%)
Length = 2230
Score = 24.6 bits (52), Expect = 3.1
Identities = 14/42 (33%), Positives = 19/42 (44%)
Frame = +1
Query: 14 KQPDSPTTPRGATGSEHNGALTLSGAPFQGTWARSAAEDASP 55
K+P P++P A S + S +P TW RS SP
Sbjct: 550 KKPAKPSSPPTAFSSWKATSTMPSFSPSSSTWWRSPMSCTSP 675
>TC9308 weakly similar to UP|Q9SQ55 (Q9SQ55) Nuclear RNA binding protein A,
partial (9%)
Length = 562
Score = 24.6 bits (52), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 33 ALTLSGAPFQGTWARSAAEDASPYYNSNA 61
+L + AP +GT +RS E A + SNA
Sbjct: 138 SLEVPDAPAEGTHSRSLTERALDFIRSNA 224
>TC15711 weakly similar to UP|MID2_YEAST (P36027) Mating process protein
MID2 (Serine-rich protein SMS1) (Protein kinase A
interference protein), partial (6%)
Length = 1014
Score = 24.6 bits (52), Expect = 3.1
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 3/42 (7%)
Frame = +2
Query: 50 AEDASPYYNSNAEGDRFSWW--AYPGSLAVTKGILV-SFFSS 88
AE PY N E R WW + G +++ GI V S +SS
Sbjct: 329 AEARHPYRNDAVEDRR*RWWNKQWQGRISIHSGIGVWSCYSS 454
>TC17082
Length = 554
Score = 24.6 bits (52), Expect = 3.1
Identities = 12/38 (31%), Positives = 16/38 (41%), Gaps = 3/38 (7%)
Frame = +3
Query: 38 GAPFQGTWARSAAEDASPYYNSNAEGDR---FSWWAYP 72
G F G W P+Y +GDR F+W+ P
Sbjct: 54 GGFFCGRWLCPYLPGKHPFYREIVDGDRCF*FTWFQLP 167
>BP058189
Length = 537
Score = 24.3 bits (51), Expect = 4.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 69 WAYPGSLAVTKGI 81
W PGSLAV++GI
Sbjct: 369 WRIPGSLAVSRGI 331
>TC11170 weakly similar to UP|Q9FKT4 (Q9FKT4) RNA-binding protein-like,
partial (32%)
Length = 613
Score = 24.3 bits (51), Expect = 4.0
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = -1
Query: 22 PRGATGSEHNGALTLSG 38
P GA G H G+++LSG
Sbjct: 187 PAGAGGRHHGGSISLSG 137
>TC19667 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (9%)
Length = 591
Score = 24.3 bits (51), Expect = 4.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 69 WAYPGSLAVTKGI 81
W PGSLAV++GI
Sbjct: 159 WRIPGSLAVSRGI 197
>AV767360
Length = 389
Score = 24.3 bits (51), Expect = 4.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 13 PKQPDSPTTPRGATGSEHNGALTLS 37
P + SP +PRG GS GAL S
Sbjct: 343 PPESGSPPSPRGMKGSIPPGALKKS 269
>BP057603
Length = 538
Score = 23.9 bits (50), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = +1
Query: 53 ASPYYNSNAEGDRFSWWAYPGSLAVTKGILVSFFSSA 89
A+ +NS+ RFS S +++K + FFSS+
Sbjct: 346 ATSPFNSSTSASRFSQVTLSTSRSISKEVTKFFFSSS 456
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.132 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,802,930
Number of Sequences: 28460
Number of extensions: 22606
Number of successful extensions: 121
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of query: 90
length of database: 4,897,600
effective HSP length: 66
effective length of query: 24
effective length of database: 3,019,240
effective search space: 72461760
effective search space used: 72461760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)
Medicago: description of AC136838.2