TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136838.16 + phase: 1 /pseudo
         (68 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana ...   134  3e-33
TC7805 homologue to PIR|PQ0772|PQ0772 4-coumarate-CoA ligase  (c...    57  9e-10
TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3,...    30  0.068
BP037819                                                               28  0.26
BP050825                                                               27  0.75
AV406612                                                               27  0.98
TC16419                                                                26  1.3
AW720394                                                               26  1.7
BP067043                                                               26  1.7
AI967908                                                               25  2.2
TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%)            25  2.2
TC19160 similar to UP|Q9LPZ8 (Q9LPZ8) T23J18.3, partial (15%)          25  2.2
CB829112                                                               25  2.8
BP050025                                                               25  2.8
TC16512 similar to UP|Q9FXL4 (Q9FXL4) Elicitor inducible chitina...    25  3.7
TC20027 similar to GB|AAM19966.1|20466089|AY098956 At2g32600/T26...    24  4.9
TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.3...    24  4.9
TC13387                                                                24  4.9
AV413391                                                               24  4.9
TC17450                                                                24  4.9

>TC7796 homologue to gb|AF036495.1|AF036495 Hamamelis virginiana large
            subunit 26S ribosomal RNA gene, partial sequence,
            complete
          Length = 6006

 Score =  134 bits (338), Expect = 3e-33
 Identities = 63/68 (92%), Positives = 64/68 (93%)
 Frame = -2

Query: 1    VPPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGISKITLKVVVFHFRCFQLPLILH 60
            VPPQPNSPPDNVFRPDRP K  L SKKRGSAPPPIHGISKITLKVVVFHFRCFQLPLILH
Sbjct: 5222 VPPQPNSPPDNVFRPDRPAKASLRSKKRGSAPPPIHGISKITLKVVVFHFRCFQLPLILH 5043

Query: 61   LSSYFTKS 68
            LSS+FTKS
Sbjct: 5042 LSSHFTKS 5019


>TC7805 homologue to PIR|PQ0772|PQ0772 4-coumarate-CoA ligase  (clone
          GM4CL1B) -                soybean (fragment) {Glycine
          max;}  , partial (41%)
          Length = 965

 Score = 56.6 bits (135), Expect = 9e-10
 Identities = 24/29 (82%), Positives = 25/29 (85%)
 Frame = -1

Query: 1  VPPQPNSPPDNVFRPDRPTKVGLGSKKRG 29
          +PPQPNSPPDNVFRPDRP K  L SKKRG
Sbjct: 89 LPPQPNSPPDNVFRPDRPAKASLRSKKRG 3


>TC11782 similar to UP|Q9LUV6 (Q9LUV6) Genomic DNA, chromosome 3, P1 clone:
           MCB17, partial (12%)
          Length = 468

 Score = 30.4 bits (67), Expect = 0.068
 Identities = 13/45 (28%), Positives = 20/45 (43%)
 Frame = +2

Query: 3   PQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGISKITLKVVV 47
           P+PN  P      D P  +     +RG  PPP +G   +  + +V
Sbjct: 263 PKPNPNPSPKHPTDHPPLIPFPFPERGPPPPPAYGFHMLERRTIV 397


>BP037819 
          Length = 543

 Score = 28.5 bits (62), Expect = 0.26
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 38  ISKITLKVVVFHFRCFQLPLILHLS 62
           I  IT+ ++  HF CF L L+LHL+
Sbjct: 525 IRLITIIIINLHFICFHLNLMLHLN 451


>BP050825 
          Length = 539

 Score = 26.9 bits (58), Expect = 0.75
 Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 1/54 (1%)
 Frame = +2

Query: 4  QPNSPPDNVFRP-DRPTKVGLGSKKRGSAPPPIHGISKITLKVVVFHFRCFQLP 56
          QPN PP   F P D    V    KK  S P P+  I+++ L    + F  ++LP
Sbjct: 29 QPNLPPGFRFHPTDEELVVHYLKKKAASVPLPVAIIAEVDL----YKFDPWELP 178


>AV406612 
          Length = 313

 Score = 26.6 bits (57), Expect = 0.98
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 3  PQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIH 36
          P  NSPP++   P +P        +  +APPP++
Sbjct: 40 PFLNSPPNHSLIPPQPMDTAAAIPEPEAAPPPLY 141


>TC16419 
          Length = 532

 Score = 26.2 bits (56), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = -3

Query: 5   PNSPPDNVFRPDRPTKVGLGSKKR 28
           P+SPP N  +  +   +GLG KKR
Sbjct: 332 PSSPPRNCLQVSQRCLLGLGEKKR 261


>AW720394 
          Length = 587

 Score = 25.8 bits (55), Expect = 1.7
 Identities = 14/38 (36%), Positives = 20/38 (51%)
 Frame = +3

Query: 3   PQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPIHGISK 40
           P+  S P N+FR     +      +R   PPPIHG++K
Sbjct: 183 PRSLSLPLNLFRSSTLRR---RRPRRHPQPPPIHGVAK 287


>BP067043 
          Length = 530

 Score = 25.8 bits (55), Expect = 1.7
 Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 5/35 (14%)
 Frame = +1

Query: 3   PQPNSPPDNVFRPDRPT-----KVGLGSKKRGSAP 32
           P P  PPDN   P+ PT      VG+GS+K   +P
Sbjct: 310 PNPPEPPDNPCHPN-PT*PINLTVGIGSEKLRFSP 411


>AI967908 
          Length = 318

 Score = 25.4 bits (54), Expect = 2.2
 Identities = 12/36 (33%), Positives = 17/36 (46%)
 Frame = -2

Query: 21  VGLGSKKRGSAPPPIHGISKITLKVVVFHFRCFQLP 56
           V +GSKK  S    I     I L+ ++  F C  +P
Sbjct: 113 VSVGSKKLASTTTLITAEKSINLRAIIIAFLCLLVP 6


>TC10315 similar to UP|P93166 (P93166) SCOF-1, partial (42%)
          Length = 592

 Score = 25.4 bits (54), Expect = 2.2
 Identities = 11/29 (37%), Positives = 15/29 (50%)
 Frame = +3

Query: 6   NSPPDNVFRPDRPTKVGLGSKKRGSAPPP 34
           N+P D V  P + T +   S    +APPP
Sbjct: 243 NAPSDLVHAPRKSTSLSASSCSLAAAPPP 329


>TC19160 similar to UP|Q9LPZ8 (Q9LPZ8) T23J18.3, partial (15%)
          Length = 557

 Score = 25.4 bits (54), Expect = 2.2
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = -3

Query: 17  RPTKVG-LGSKKR------GSAPPPIHGISKITLKVVVFHFRCFQLPLILH 60
           +PT  G LGS K       G+ P P+H  +K  L ++V H    +  L+LH
Sbjct: 540 KPTLSGSLGSTKPSATHDDGAEPKPLHLQAKPLLHIMVLHNVNLERDLLLH 388


>CB829112 
          Length = 234

 Score = 25.0 bits (53), Expect = 2.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 2   PPQPNSPPDNVFRPDRPTKVGLGSKKRGSA 31
           PP P  PP     P  P+++   S KR SA
Sbjct: 117 PPPPPPPPATHILPMTPSRMTQMSSKRSSA 206


>BP050025 
          Length = 552

 Score = 25.0 bits (53), Expect = 2.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 2   PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP 34
           PP+P+SP        RPT    G K  G  P P
Sbjct: 175 PPEPDSPDQ------RPTVEVTGHKAHGPVPQP 255


>TC16512 similar to UP|Q9FXL4 (Q9FXL4) Elicitor inducible chitinase
           Nt-SubE76, partial (48%)
          Length = 857

 Score = 24.6 bits (52), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
 Frame = +2

Query: 16  DRPTKVGLGSKKRGSAPPPIH-GISKIT 42
           D+P+ VG G K+   +P P+  G+SK T
Sbjct: 695 DKPSPVGGGEKQPVPSPAPVSGGVSKST 778


>TC20027 similar to GB|AAM19966.1|20466089|AY098956 At2g32600/T26B15.16
           {Arabidopsis thaliana;}, partial (6%)
          Length = 480

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 3   PQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPPI 35
           PQ  SPP       RP+ +G   +   S PPP+
Sbjct: 119 PQQQSPPGFY----RPSGMGFYGQSHPSTPPPV 205


>TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.35
           {Arabidopsis thaliana;} , partial (16%)
          Length = 1208

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +3

Query: 1   VPPQPNSPPDNVFRPDRPTKV--GLGSKKRGSAPP 33
           +PP P+SPP     P   T +     +    SAPP
Sbjct: 306 IPPNPSSPPSASSSPTSTTSMIPPASANSPSSAPP 410


>TC13387 
          Length = 511

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 28  RGSAPPPIHGISKITLKVVVFHFRCFQLPL 57
           RG  PPP+H +  I +  V+ HF    L L
Sbjct: 112 RGEGPPPVHRV--IAIGHVINHFVQLHLTL 195


>AV413391 
          Length = 428

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 2  PPQPNSPPDNVFRPDRPTKVGLGSKKRGSAPPP 34
          PP P+SPP     P  P+K    S  R S  PP
Sbjct: 58 PPTPHSPPS----PAAPSKRPTPSPPRISYQPP 144


>TC17450 
          Length = 506

 Score = 24.3 bits (51), Expect = 4.9
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 44  KVVVFHF--RCFQLPLILHLSSYFTK 67
           ++ +FH   RCF +PL+ +  SY  K
Sbjct: 396 ELFLFHVLVRCFSMPLVNYTDSYLRK 473


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,809,672
Number of Sequences: 28460
Number of extensions: 31258
Number of successful extensions: 265
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of query: 68
length of database: 4,897,600
effective HSP length: 44
effective length of query: 24
effective length of database: 3,645,360
effective search space: 87488640
effective search space used: 87488640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)