BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136506.8 - phase: 1
(358 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18044 similar to UP|Q9LDC0 (Q9LDC0) FKBP-like protein (Genomic... 244 6e-89
TC17693 similar to UP|SFR2_HUMAN (Q01130) Splicing factor, argin... 70 5e-13
TC13044 similar to UP|FKB7_WHEAT (Q43207) 70 kDa peptidylprolyl ... 61 3e-10
BP036216 58 2e-09
BP043872 50 4e-07
TC9401 similar to UP|Q84LW7 (Q84LW7) Peptidylprolyl cis-trans is... 46 8e-06
TC12245 similar to UP|Q84K11 (Q84K11) Type 5 protein serine/thre... 45 1e-05
TC14016 similar to UP|Q38931 (Q38931) Rof1, partial (12%) 44 3e-05
TC16034 homologue to UP|FKB2_VICFA (Q41649) FK506-binding protei... 44 5e-05
CB828677 44 5e-05
TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like... 40 6e-04
BU494209 35 0.025
TC9301 similar to UP|Q7Y0Z0 (Q7Y0Z0) TPR1, complete 34 0.033
TC17079 similar to UP|Q84UV7 (Q84UV7) SGT1, partial (38%) 33 0.096
TC7927 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like... 32 0.13
TC11244 similar to UP|Q84UV7 (Q84UV7) SGT1, partial (32%) 30 0.62
TC17680 similar to UP|O65440 (O65440) CLV1 receptor kinase like ... 29 1.1
BP041804 28 1.8
TC19892 similar to UP|Q9FLI5 (Q9FLI5) Similarity to peptidase, p... 27 6.9
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me... 27 6.9
>TC18044 similar to UP|Q9LDC0 (Q9LDC0) FKBP-like protein (Genomic DNA,
chromosome 3, P1 clone: MIL23), partial (41%)
Length = 867
Score = 244 bits (624), Expect(3) = 6e-89
Identities = 120/132 (90%), Positives = 126/132 (94%)
Frame = +1
Query: 166 RIGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL 225
RIGAADRRKMDGN LFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL
Sbjct: 13 RIGAADRRKMDGNALFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHL 192
Query: 226 NTAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARKHA 285
N AAC IKLNRYEEAIG CSIVL EDE+N+KALFRRGKARAALGQTDAARED+LKARK+A
Sbjct: 193 NMAACFIKLNRYEEAIGHCSIVLGEDENNVKALFRRGKARAALGQTDAAREDYLKARKYA 372
Query: 286 PEDKAIARELKL 297
PEDKAIAR +K+
Sbjct: 373 PEDKAIARRIKV 408
Score = 73.2 bits (178), Expect(3) = 6e-89
Identities = 28/51 (54%), Positives = 39/51 (75%)
Frame = +3
Query: 307 QKQKEIYKGIFGPRPQPVPQKRNWFIVVWQWLVSVFHNFITLFNREKKHKD 357
+ +K KGIFGPRPQPVP+++NW I++WQW +S+F+ ITLF RE+ D
Sbjct: 438 KSRKRSIKGIFGPRPQPVPKRKNWLILIWQWFLSLFYGLITLFQRERYKSD 590
Score = 48.1 bits (113), Expect(3) = 6e-89
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +2
Query: 289 KAIARELKLLAEHDKAIYQKQKEIYKG 315
K + EL+LLAEHDKA+YQKQKEIYKG
Sbjct: 383 KPLQEELRLLAEHDKAVYQKQKEIYKG 463
>TC17693 similar to UP|SFR2_HUMAN (Q01130) Splicing factor,
arginine/serine-rich 2 (Splicing factor SC35) (SC-35)
(Splicing component, 35 kDa) (PR264 protein), partial
(8%)
Length = 751
Score = 70.1 bits (170), Expect = 5e-13
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +2
Query: 170 ADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNTAA 229
A+ K +GN LF E K EEA+ QYE+A+ D ++ +++ H N+A
Sbjct: 338 ANEAKTEGNKLFLEGKYEEALVQYELALQVAPD----------MPSSVEIRSIFHSNSAV 487
Query: 230 CLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARKHAPED- 288
C +KL +YE I +C+ L + + +KAL RRG+A L + A D K + P +
Sbjct: 488 CFLKLGKYENTIKECTKALELNPTYVKALVRRGEAHEKLEHNEEALADLKKILEIDPSND 667
Query: 289 ---KAIARELKLLAE 300
KAI R L AE
Sbjct: 668 QARKAIRRLEPLAAE 712
>TC13044 similar to UP|FKB7_WHEAT (Q43207) 70 kDa peptidylprolyl isomerase
(Peptidyl-prolyl cis-trans isomerase) (PPIase)
(Rotamase) , partial (26%)
Length = 531
Score = 60.8 bits (146), Expect = 3e-10
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Frame = +2
Query: 25 LSSPPKVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFFHYRAWSENTEHKFEDTWQEQ 83
+S KV E E+ + + K+++KEG G + P HY + KF+ +
Sbjct: 77 ISPKDKVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGS-KFDSSRDRD 253
Query: 84 RPTEMVIGKEKKEMTGLGIGVASMKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYE 143
P +G + + + G G+ +MK GE AL + EL YG+ GS P +PP A L ++
Sbjct: 254 APFSFTLG-QGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSP--PTIPPNATLQFD 424
Query: 144 VELIGFDETKD 154
VEL+ + KD
Sbjct: 425 VELLSWTSVKD 457
>BP036216
Length = 574
Score = 58.2 bits (139), Expect = 2e-09
Identities = 41/126 (32%), Positives = 61/126 (47%), Gaps = 1/126 (0%)
Frame = +1
Query: 30 KVDSEVEVLHEKVTKQIIKEGHG-QKPSKYSTCFFHYRAWSENTEHKFEDTWQEQRPTEM 88
KV E E + + K++IKEG G P HY + KF+ + P
Sbjct: 163 KVGDEKEXGIQGLKKKLIKEGEGXDTPDAGDEVHVHYTGTLLDGT-KFDSSRDRGTPFNF 339
Query: 89 VIGKEKKEMTGLGIGVASMKAGERALLRVSWELGYGQEGSFSFPNVPPMADLVYEVELIG 148
+G + + + G G+ +MK GE AL + EL YG+ GS P +PP A L ++VEL+
Sbjct: 340 TLG-QGQVIKGWDEGIKTMKKGENALFTIPAELAYGESGSP--PTIPPNATLQFDVELLS 510
Query: 149 FDETKD 154
+ KD
Sbjct: 511 WTSVKD 528
>BP043872
Length = 491
Score = 50.4 bits (119), Expect = 4e-07
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = -1
Query: 232 IKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARKHAPEDKAI 291
+KLN + EA C+ VL+ + +N+KAL+RR +A L D A D KA + P+++ +
Sbjct: 491 LKLNDFIEAEKLCTRVLNLESTNVKALYRRAEALMQLADLDLAELDIKKALEVDPDNREV 312
Query: 292 ARELKLLAEHDKAIYQKQKEIY 313
+ K L E K +K+ Y
Sbjct: 311 KLQYKTLKEKVKEFNKKEARFY 246
>TC9401 similar to UP|Q84LW7 (Q84LW7) Peptidylprolyl cis-trans isomerase ,
partial (97%)
Length = 918
Score = 46.2 bits (108), Expect = 8e-06
Identities = 38/135 (28%), Positives = 57/135 (42%)
Frame = +1
Query: 64 HYRAWSENTEHKFEDTWQEQRPTEMVIGKEKKEMTGLGIGVASMKAGERALLRVSWELGY 123
HY +T F+ T ++ +GK + + V +MK GE A + E Y
Sbjct: 274 HYEGTLADTGEVFDTTHEDNTIFSFELGKGSV-IKAWDVAVKTMKVGEIAKITCKPEYAY 450
Query: 124 GQEGSFSFPNVPPMADLVYEVELIGFDETKDGKARSDMTVEERIGAADRRKMDGNVLFQE 183
G GS P++PP A LV+EVEL+ + K G+V +
Sbjct: 451 GSAGSP--PDIPPDATLVFEVELLACNPRKGSSL-------------------GSVTEER 567
Query: 184 NKLEEAMQQYEMAIA 198
+LEE +Q E+A A
Sbjct: 568 ARLEELKKQREIAAA 612
>TC12245 similar to UP|Q84K11 (Q84K11) Type 5 protein serine/threonine
phosphatase 62 kDa isoform, partial (26%)
Length = 559
Score = 45.4 bits (106), Expect = 1e-05
Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 2/158 (1%)
Frame = +2
Query: 156 KARSDMTVEE-RIGAADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYRD 214
K ++M E + A+ K+ N F+ K +A++ Y AI
Sbjct: 98 KVSTEMATENSNVSKAEELKLLANDAFKARKYAQAIELYTEAIE---------------- 229
Query: 215 MALAVKNPCHL-NTAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDA 273
L +N +L N A ++L Y AI + + D K +RRG A LG+
Sbjct: 230 --LDSQNAVYLANRAFAHLRLEEYGSAILDATKAIEVDPKYAKGYYRRGAAHLGLGKFKE 403
Query: 274 AREDFLKARKHAPEDKAIARELKLLAEHDKAIYQKQKE 311
A +DF + ++ P D ++LK E +KA+ + + E
Sbjct: 404 ALKDFQQVKRMCPNDPDATKKLK---ECEKAVMKLKFE 508
>TC14016 similar to UP|Q38931 (Q38931) Rof1, partial (12%)
Length = 506
Score = 44.3 bits (103), Expect = 3e-05
Identities = 24/72 (33%), Positives = 36/72 (49%)
Frame = +2
Query: 251 DESNLKALFRRGKARAALGQTDAAREDFLKARKHAPEDKAIARELKLLAEHDKAIYQKQK 310
+ +N+KAL+RR +A L D A D KA + P + + E K L E K +QK+
Sbjct: 2 ESTNVKALYRRAQAYIPLADLDLAEFDIQKALEIDPNHRDVQLEYKTLKEKMKEFHQKEA 181
Query: 311 EIYKGIFGPRPQ 322
+ Y +F Q
Sbjct: 182 KFYGNMFSQMSQ 217
>TC16034 homologue to UP|FKB2_VICFA (Q41649) FK506-binding protein 2
precursor (Peptidyl-prolyl cis-trans isomerase)
(PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15) , partial
(91%)
Length = 592
Score = 43.5 bits (101), Expect = 5e-05
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = +3
Query: 76 FEDTWQEQRPTEMVIGKEKKEMTGLGIGVASMKAGERALLRVSWELGYGQEGSFSFPNVP 135
F+ +++ P + +G + + G G+ M GE+ L++ +LGYG++G S P +P
Sbjct: 219 FDSSFERNSPIDFELGSGQV-IKGWDQGLLGMCLGEKRKLKIPAKLGYGEQG--SPPTIP 389
Query: 136 PMADLVYEVELIGFDE 151
A LV++ EL+G ++
Sbjct: 390 GGATLVFDTELVGVND 437
>CB828677
Length = 520
Score = 43.5 bits (101), Expect = 5e-05
Identities = 36/151 (23%), Positives = 59/151 (38%), Gaps = 7/151 (4%)
Frame = +3
Query: 152 TKDGKAR----SDMTVEERIGAADR---RKMDGNVLFQENKLEEAMQQYEMAIAYMGDDF 204
T GKAR S+ V + +R + GN LF K +A Y + Y ++
Sbjct: 90 TAAGKARLLDYSNYEVSRIVNTVNRVAQARSRGNELFSSGKFSDACTAYGEGLKYDNSNY 269
Query: 205 MFQLFGKYRDMALAVKNPCHLNTAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKA 264
+ + N A C KL +E+++ C+ L+ + KAL RR +
Sbjct: 270 VL-----------------YCNRAICWSKLGLWEQSVQDCNQALNIQPNYTKALLRRAAS 398
Query: 265 RAALGQTDAAREDFLKARKHAPEDKAIAREL 295
A L + +D+ + P D +A L
Sbjct: 399 NAKLERWAEVVKDYQALKHELPNDNDVAVSL 491
>TC7928 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
(52%)
Length = 765
Score = 40.0 bits (92), Expect = 6e-04
Identities = 47/189 (24%), Positives = 81/189 (41%), Gaps = 5/189 (2%)
Frame = +2
Query: 138 ADLVYEVELIGFDET---KDGKARSDMTVEERIGAADRRKMDGNVLFQENKLEEAMQQYE 194
+D+ E E++ D+ K G ++T E R A+ K E LEEA++
Sbjct: 248 SDIELEGEIVEPDDDPPQKMGDPSVEVTEESR-EASQLAKAKAMEAISEGNLEEAIESLT 424
Query: 195 MAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNTAACLIKLNRYEEAIGQCSIVLSEDESN 254
AI+ + ++G N A+ IK+ + AI + L + +
Sbjct: 425 DAISLNPTSAI--MYG---------------NRASVYIKMKKPNAAIRDANAALEINPDS 553
Query: 255 LKALFRRGKARAALGQTDAAREDFLKARK--HAPEDKAIARELKLLAEHDKAIYQKQKEI 312
K RG ARA LGQ + A +D A K + E A+ ++++ A + +K +++
Sbjct: 554 AKGYKTRGMARALLGQWEEAAKDLHVASKLDYDEEISAVLKKVEPNAHKIEEHRRKYEDL 733
Query: 313 YKGIFGPRP 321
+K GP P
Sbjct: 734 HKERGGPVP 760
>BU494209
Length = 453
Score = 34.7 bits (78), Expect = 0.025
Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 3/66 (4%)
Frame = +1
Query: 92 KEKKEMTGLGIGVASMKAGERALLRVSWELGYGQEGSFSFPN---VPPMADLVYEVELIG 148
KE L V +MK GE+ +L V + G+G++G + + +PP A L +EL+
Sbjct: 112 KEAHFCPALSTAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAIPPNATLQITLELVS 291
Query: 149 FDETKD 154
+ D
Sbjct: 292 WKTVTD 309
>TC9301 similar to UP|Q7Y0Z0 (Q7Y0Z0) TPR1, complete
Length = 1288
Score = 34.3 bits (77), Expect = 0.033
Identities = 30/138 (21%), Positives = 53/138 (37%), Gaps = 2/138 (1%)
Frame = +3
Query: 156 KARSDMTVEERIGA--ADRRKMDGNVLFQENKLEEAMQQYEMAIAYMGDDFMFQLFGKYR 213
KA+ D+ +E AD + GN F++ K EA+ Y +I +D
Sbjct: 483 KAKKDLEQKEYFDPKLADEEREKGNEFFKQQKYPEAVGHYTESIRRNPND---------- 632
Query: 214 DMALAVKNPCHLNTAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDA 273
+ N AAC KL E + + D + +K R+G + + +
Sbjct: 633 -------PRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMKDHEK 791
Query: 274 AREDFLKARKHAPEDKAI 291
A E + + K P ++ +
Sbjct: 792 ALETYREGLKLDPNNQEL 845
>TC17079 similar to UP|Q84UV7 (Q84UV7) SGT1, partial (38%)
Length = 676
Score = 32.7 bits (73), Expect = 0.096
Identities = 22/74 (29%), Positives = 35/74 (46%)
Frame = +1
Query: 232 IKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARKHAPEDKAI 291
+KLN + EA+ + + D S KA R+G A L + A+ K AP+D
Sbjct: 232 LKLNAFTEAVSDANKAIQLDPSLPKAYLRKGTACIKLEEYHTAKVALEKGASFAPDD--- 402
Query: 292 ARELKLLAEHDKAI 305
+R L+ + D+ I
Sbjct: 403 SRFTNLIQQCDRYI 444
>TC7927 similar to UP|Q93YR3 (Q93YR3) HSP associated protein like, partial
(56%)
Length = 1116
Score = 32.3 bits (72), Expect = 0.13
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +1
Query: 228 AACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARK--HA 285
A+ IK+ + AI + L + + K RG ARA LGQ + A +D A K +
Sbjct: 43 ASVYIKMKKPNAAIRDANAALEINPDSAKGYKTRGMARALLGQWEEAAKDLHVASKLDYD 222
Query: 286 PEDKAIARELKLLAEHDKAIYQKQKEIYKGIFGPRPQPVPQKR 328
E A+ ++++ A + +K + ++K R + Q+R
Sbjct: 223 EEISAVLKKVEPNAHKIEEHRRKYERLHKEREEKRTERERQRR 351
>TC11244 similar to UP|Q84UV7 (Q84UV7) SGT1, partial (32%)
Length = 417
Score = 30.0 bits (66), Expect = 0.62
Identities = 26/85 (30%), Positives = 40/85 (46%)
Frame = +2
Query: 224 HLNTAACLIKLNRYEEAIGQCSIVLSEDESNLKALFRRGKARAALGQTDAAREDFLKARK 283
+ + A IKLN + EAI + + + S KA R+G A L + A+ L+
Sbjct: 146 YADRAQANIKLNNFTEAIADANKAIELNPSLSKAYLRKGTACMKLEEYQTAK-TALEMGA 322
Query: 284 HAPEDKAIARELKLLAEHDKAIYQK 308
DK +R L L+ E DK I ++
Sbjct: 323 TLSTDK--SRFLNLIKECDKLIAEE 391
>TC17680 similar to UP|O65440 (O65440) CLV1 receptor kinase like protein,
partial (16%)
Length = 685
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +2
Query: 51 HGQKPSKYST--CF-FHYRAWSENTEHKFEDTWQEQ 83
H +KPS+YS C+ F +AWS+ T K+ W++Q
Sbjct: 377 H*RKPSRYSLWPCYVFRNQAWSDQT*GKWLKCWRKQ 484
>BP041804
Length = 533
Score = 28.5 bits (62), Expect = 1.8
Identities = 18/49 (36%), Positives = 25/49 (50%)
Frame = +3
Query: 23 ELLSSPPKVDSEVEVLHEKVTKQIIKEGHGQKPSKYSTCFFHYRAWSEN 71
+LL KVD + L E V +Q H QKP S C FH+ + S++
Sbjct: 282 QLLH*KIKVDLLLSCLSESVAQQ-----HEQKPELVSICKFHWYSHSQD 413
>TC19892 similar to UP|Q9FLI5 (Q9FLI5) Similarity to peptidase, partial
(13%)
Length = 431
Score = 26.6 bits (57), Expect = 6.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 58 YSTCFFHYRAWSE 70
YS CFFHY +W +
Sbjct: 176 YSKCFFHYLSWCQ 138
>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
protein 1, complete
Length = 1149
Score = 26.6 bits (57), Expect = 6.9
Identities = 9/21 (42%), Positives = 14/21 (65%)
Frame = +2
Query: 329 NWFIVVWQWLVSVFHNFITLF 349
N +++W WL +FH F+ LF
Sbjct: 1052 N*MLIIWVWLDVLFHFFLFLF 1114
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,036,695
Number of Sequences: 28460
Number of extensions: 80132
Number of successful extensions: 443
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of query: 358
length of database: 4,897,600
effective HSP length: 91
effective length of query: 267
effective length of database: 2,307,740
effective search space: 616166580
effective search space used: 616166580
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Medicago: description of AC136506.8