BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136506.7 - phase: 0 /pseudo
(1021 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP075943 166 1e-41
AV780009 153 2e-37
AV424544 100 1e-21
BP066094 99 3e-21
BP063694 73 2e-13
AV766088 67 1e-11
AU088980 65 5e-11
AV411594 57 1e-10
BP033602 56 3e-08
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 55 6e-08
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 55 6e-08
BP081717 54 2e-07
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 52 6e-07
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 51 1e-06
AV766665 50 2e-06
BP058111 48 9e-06
AV427921 47 2e-05
TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partia... 46 3e-05
BP080584 44 1e-04
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 42 6e-04
>BP075943
Length = 547
Score = 166 bits (421), Expect = 1e-41
Identities = 88/168 (52%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Frame = -3
Query: 682 ASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAFKIKDLGTLKYFLGLEVAHSQSGIS 741
+S S T LL+YVDD++LAG+ + EI +K+ ++ F+IKDLG KYFLGLE+A S SGI
Sbjct: 542 SSGSFTALLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIV 363
Query: 742 LCQRKYCLDLLHDLGLLGSKP-VTTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTT 800
L QRKY L L+ D G G +P + S L ++ D+ +YRR+VGRL+YLNTT
Sbjct: 362 LNQRKYALQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTT 183
Query: 801 RPDITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGRGIFFPRSSS 848
RPDITF QLSQFLS PT H +KYL GSPG G+F+P SSS
Sbjct: 182 RPDITFAVNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSS 39
>AV780009
Length = 529
Score = 153 bits (386), Expect = 2e-37
Identities = 71/125 (56%), Positives = 92/125 (72%)
Frame = -1
Query: 825 AALRVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWR 884
AA RV++Y+KG+P +G+FF S L +Q Y+++DWAGC DTRRS++ FLG SLISWR
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 885 TKK*PTISRFSSEAEYRAMASATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANP 944
TKK T+SR SSEAEYRA+A+ CE+QWL YL + L + + L+CDNQS +HIA NP
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHNP 167
Query: 945 DFHSR 949
FH R
Sbjct: 166 TFHER 152
>AV424544
Length = 276
Score = 100 bits (249), Expect = 1e-21
Identities = 53/90 (58%), Positives = 64/90 (70%)
Frame = +3
Query: 658 KLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQAF 717
KL+ L GY Q+ D SLFTK S T++LVYVDD+ILAG+ L EI +KN ++ F
Sbjct: 6 KLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQF 185
Query: 718 KIKDLGTLKYFLGLEVAHSQSGISLCQRKY 747
+IKDLGTLKYFLGLEVA S G+ L QRKY
Sbjct: 186 RIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>BP066094
Length = 532
Score = 99.4 bits (246), Expect = 3e-21
Identities = 54/137 (39%), Positives = 81/137 (58%), Gaps = 2/137 (1%)
Frame = +2
Query: 598 SINH-WFLHQLDVNNAFLHGDLHEDVYMTVLPGVTTSK-PNQVCKLSKSLYGLKQASRKW 655
S+NH LHQ++V +AFL+G + E+VY+ PG K + + KL KSLYGLKQA R W
Sbjct: 122 SVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKKSLYGLKQAPRAW 301
Query: 656 YEKLTGLLISNGYQQATSDASLFTKKASVSLTILLVYVDDIILAGDSLIEIAFIKNVINQ 715
YE+L+ L+ N + D +LF K + I+ +YVDDII + ++
Sbjct: 302 YERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANPSLCKEFSEMMQA 481
Query: 716 AFKIKDLGTLKYFLGLE 732
F+++ +G LKYFLG++
Sbjct: 482 EFEMRMMGELKYFLGIQ 532
>BP063694
Length = 511
Score = 73.2 bits (178), Expect = 2e-13
Identities = 39/115 (33%), Positives = 64/115 (54%), Gaps = 6/115 (5%)
Frame = -2
Query: 1 IWHFRLGHLSNQRLSKMHQ---LYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFE 57
+WH RLGH++ + ++H+ L S + C C AK ++L ++ ++ A + +
Sbjct: 360 LWHSRLGHVNFDIIKQLHKHGCLDVSSILPKPICCTSCQMAKSKRLVFHDNNKRASAVLD 181
Query: 58 LLYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEVS---LPVKIFVQ 109
L++ D+ GP SI G YF+ VDDFSRF W LK K++ S L K+F++
Sbjct: 180 LIHCDLRGPSPVASIDGFSYFVIFVDDFSRFTWFYPLKRKSDFSDVLLRFKVFME 16
>AV766088
Length = 501
Score = 67.4 bits (163), Expect = 1e-11
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = -3
Query: 1 IWHFRLGHLSNQRLS--KMHQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFEL 58
+WH RLGH S+ L + ++ ++ C+ C F K +LP+ S+++ F++
Sbjct: 307 LWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPFVSSNNVTVMPFDI 128
Query: 59 LYFDIWGPLAQTSIHGHKYFLTIVDDFSRFLWVILLKNKAEV 100
L+ D+W +S GH++++ +DDF+ FLW L NK++V
Sbjct: 127 LHSDLWTSPVLSSA-GHRFYVLFLDDFTDFLWTFPLSNKSQV 5
>AU088980
Length = 360
Score = 65.1 bits (157), Expect = 5e-11
Identities = 31/69 (44%), Positives = 44/69 (62%)
Frame = +2
Query: 154 NARVERKHQHILNVARALPFQFKLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*VLYDS 213
N+ VERKH+HILNV RAL F LP W++AV ++ +LIN +P+P L + PY L +
Sbjct: 2 NSIVERKHRHILNVTRALMFHSYLPKNLWTFAVKHAAYLINXLPSPLLKGQCPYQFLNND 181
Query: 214 LPDIQFFKI 222
P + K+
Sbjct: 182 SPTLLDLKV 208
>AV411594
Length = 244
Score = 57.0 bits (136), Expect(2) = 1e-10
Identities = 30/65 (46%), Positives = 39/65 (59%)
Frame = +2
Query: 728 FLGLEVAHSQSGISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSPLFADVSAY 787
FL +A S+ GI L +RKY L LL D +G KP P DPSIKL++ L +DV+ Y
Sbjct: 50 FLRT*IAKSKKGILLSRRKYALQLLDDTRNMGCKPPPFPLDPSIKLNSTDGELLSDVTLY 229
Query: 788 RRLVG 792
R +G
Sbjct: 230 IRFIG 244
Score = 26.9 bits (58), Expect(2) = 1e-10
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 715 QAFKIKDLGTLKYFLGLE 732
++FK+K L +KYFLGLE
Sbjct: 12 KSFKLKVLDDMKYFLGLE 65
>BP033602
Length = 533
Score = 56.2 bits (134), Expect = 3e-08
Identities = 28/85 (32%), Positives = 47/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 1 IWHFRLGHLSNQRLSKMH-QLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
+WH RLGH + Q L + L+ +++ + C+ C AK ++ PY A F L+
Sbjct: 276 LWHNRLGHPNFQYLRHLFPDLFKNVNCSS-LECESCVLAKNQRAPYYSQPYHASRPFYLI 452
Query: 60 YFDIWGPLAQTSIHGHKYFLTIVDD 84
+ D+WGP T+ G ++F+T +DD
Sbjct: 453 HSDVWGPSKITTQFGKRWFVTFIDD 527
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 55.1 bits (131), Expect = 6e-08
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +3
Query: 905 SATCELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
S CE WL Y L DL I + L+V+YCDN+S +H+AAN FH R
Sbjct: 9 SHPCEALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKR 143
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 55.1 bits (131), Expect = 6e-08
Identities = 38/137 (27%), Positives = 68/137 (48%), Gaps = 3/137 (2%)
Frame = +2
Query: 663 LISNGYQQATSDASLFTKKASVS-LTILLVYVDDIILAGDSLIEIAFIKNVINQAFKIKD 721
++S GY + +SD + K+ + ILL+YVDD+++ G + + +K + + F +KD
Sbjct: 14 IMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKD 193
Query: 722 LGTLKYFLGLEVAHSQSG--ISLCQRKYCLDLLHDLGLLGSKPVTTPSDPSIKLHNDSSP 779
LG LG+++ + I L Q+ Y +L + P++TP + KL SS
Sbjct: 194 LGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKL---SSS 364
Query: 780 LFADVSAYRRLVGRLIY 796
+ A R + R+ Y
Sbjct: 365 MIPSSEAERMEMSRVPY 415
>BP081717
Length = 291
Score = 53.5 bits (127), Expect = 2e-07
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = -1
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNKATCDICPFAKQRKLPYNFSHSIAKSKF 56
+WHFRLGH S++ L + +++P + + + CD C AKQ KLP+ S + +K+ F
Sbjct: 168 MWHFRLGHPSSKVLQHISKVFPYVKLHSNIICDFCHMAKQTKLPFPISDTKSKACF 1
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 51.6 bits (122), Expect = 6e-07
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +1
Query: 908 CELQWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
CEL WL Y+L+DL + + +LYCD+QS HIA N FH R
Sbjct: 1 CEL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHER 126
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 50.8 bits (120), Expect = 1e-06
Identities = 22/39 (56%), Positives = 27/39 (68%)
Frame = +1
Query: 911 QWLLYLLRDLHIRCVKLLVLYCDNQSVMHIAANPDFHSR 949
QWL YLL+DL + + ++YCDN S HIAANP FH R
Sbjct: 1 QWLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHER 117
>AV766665
Length = 601
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +3
Query: 828 RVIKYLKGSPGRGIFFPRSSSLHIQGYTNADWAGCKDTRRSISCRCFFLGQSLISWRTKK 887
R+ YLK + RG F + + G+T AD+ G R S FL +L++WR+K+
Sbjct: 372 RIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSGNLVTWRSKQ 551
Query: 888 *PTISRFSSEAEYRA 902
I+R S EAE RA
Sbjct: 552 QNIIARSSGEAELRA 596
>BP058111
Length = 570
Score = 47.8 bits (112), Expect = 9e-06
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = -1
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDN-KATCDICPFAKQRKLPYNFSHSIAKSKFELL 59
+WH RLGH S+++L+ + + +P I+ + CD C AKQ+KL + S +++ F+L+
Sbjct: 186 LWHLRLGHTSSKKLAILQKNFPFITCKKITSPCDTCHMAKQKKLSFPNSVTLSSEIFDLI 7
Query: 60 Y 60
+
Sbjct: 6 H 4
>AV427921
Length = 284
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +1
Query: 150 TPEQNARVERKHQHILNVARALPFQFKLPNIFWSYAVLYSVFLINRVPTPFLHHKSPY*V 209
TP+QN ERK++ ILN+ R+L LP F AV++S+ ++NR PT + + P
Sbjct: 22 TPQQNGVSERKNRTILNMVRSLLTMSGLPKSFLPEAVMWSLHILNRSPTLVVQNMMPEEA 201
Query: 210 LYDSLPDIQFFKI 222
P + F+I
Sbjct: 202 WSGRQPAVDHFRI 240
>TC17418 similar to UP|Q94AX2 (Q94AX2) AT5g39790/MKM21_80, partial (20%)
Length = 739
Score = 46.2 bits (108), Expect = 3e-05
Identities = 43/144 (29%), Positives = 63/144 (42%), Gaps = 4/144 (2%)
Frame = -1
Query: 744 QRKYCLDLLHDLGLLGSKPV-TTPSDPSIKLHNDSSPLFADVSAYRRLVGRLIYLNTTRP 802
Q+ Y D+L + SK + TT I+ + D + Y+ L+G + YLNT R
Sbjct: 739 QKIYVDDILKKFKMTNSKYISTTIGGKEIEAGRRNGGKRVDSTYYKSLIGSVRYLNTVRS 560
Query: 803 DITFITQQLSQFLSKPTHTHYNAALRVIKYLKGSPGRGIF---FPRSSSLHIQGYTNADW 859
DI S+F+ +P H A R ++Y+KG+ GIF +SL Q T +
Sbjct: 559 DIVCGVGLRSRFM-EP*DCH*QGAQRSLRYIKGTLKDGIFMLVITM*NSLDTQIVTRPGY 383
Query: 860 AGCKDTRRSISCRCFFLGQSLISW 883
A F LG+ ISW
Sbjct: 382 A-------------FHLGRGAISW 350
>BP080584
Length = 507
Score = 43.9 bits (102), Expect = 1e-04
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = -3
Query: 1 IWHFRLGHLSNQRLSKMHQLYPSISVDNKATCDICPFAK 39
+WHFRLGH S + + ++P I + + CDICP AK
Sbjct: 118 LWHFRLGHPSFVKEQSIRDIFPYIVCNKEQVCDICPLAK 2
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 41.6 bits (96), Expect = 6e-04
Identities = 28/74 (37%), Positives = 38/74 (50%), Gaps = 7/74 (9%)
Frame = +2
Query: 259 IHQLLHQYLMNLTFHYLFHP-------HLSHHLHHLLFPFLHRLHHLHLFQLELPLEIKS 311
+ +LL Q+L +LTFHYL P H+S HL LL +L+ L HL + LPL
Sbjct: 182 LQKLLPQHLNHLTFHYLLKPLLQFLNLHMSQHLQALLPQYLNLLTLQHLQKPLLPLLNLH 361
Query: 312 VLHIYMTIFVMHLS 325
L T+ +LS
Sbjct: 362 TLQHLQTLLPQYLS 403
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.340 0.149 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,538,248
Number of Sequences: 28460
Number of extensions: 348123
Number of successful extensions: 4640
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 4150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4457
length of query: 1021
length of database: 4,897,600
effective HSP length: 99
effective length of query: 922
effective length of database: 2,080,060
effective search space: 1917815320
effective search space used: 1917815320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC136506.7