TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136506.11 - phase: 0 /pseudo
         (1043 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP057010                                                              224  5e-59
TC10326 similar to AAQ89612 (AAQ89612) At5g26850, partial (21%)       222  2e-58
AV777219                                                              179  3e-45
TC19601 similar to UP|Q94KD1 (Q94KD1) At1g05960/T21E18_20, parti...   167  1e-41
TC17942 weakly similar to UP|Q94KD1 (Q94KD1) At1g05960/T21E18_20...    86  4e-17
AV778252                                                               50  2e-06
TC11743 similar to UP|Q94KD1 (Q94KD1) At1g05960/T21E18_20, parti...    34  0.10
AV420729                                                               30  2.0
TC17237 weakly similar to UP|Q9SS82 (Q9SS82) MZB10.8 protein, pa...    29  4.4
TC14164 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, ...    28  7.4
TC14368 similar to UP|Q9LLC2 (Q9LLC2) Xyloglucan endotransglycos...    28  9.7
TC14367 similar to UP|Q9ZRV1 (Q9ZRV1) Xyloglucan endotransglycos...    28  9.7

>BP057010 
          Length = 573

 Score =  224 bits (571), Expect = 5e-59
 Identities = 102/152 (67%), Positives = 124/152 (81%)
 Frame = +2

Query: 1   MSVISRNIWPVCGSLCCFCPALRERSRHPIKRYKKLLADIFPRTPEEEPNDRKISKLCEY 60
           M V+SR + PVCG+LCC CP+LR  SR P+KRYKKLLADIFPR  E EPNDRK+ KLC+Y
Sbjct: 116 MGVMSRRVVPVCGNLCCMCPSLRASSRQPVKRYKKLLADIFPRNQEAEPNDRKMGKLCDY 295

Query: 61  ASKNPLRVPKITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCRDQMPLFASSLLSII 120
           ASKNPLR+PK+T  LEQ CYK+LR E + +VKVV+CIYRK L SC++ MPLFA SLL II
Sbjct: 296 ASKNPLRIPKVTDNLEQICYKDLRNEVFGSVKVVLCIYRKFLSSCKEHMPLFAGSLLEII 475

Query: 121 QILLDQSRQDEVQILGCQTLFDFVNNQRDGTY 152
           + LL+Q+R DE++ILGC TL DF++ Q DGTY
Sbjct: 476 RTLLEQTRTDEIRILGCNTLIDFIDRQTDGTY 571


>TC10326 similar to AAQ89612 (AAQ89612) At5g26850, partial (21%)
          Length = 746

 Score =  222 bits (566), Expect = 2e-58
 Identities = 105/205 (51%), Positives = 147/205 (71%)
 Frame = +2

Query: 1   MSVISRNIWPVCGSLCCFCPALRERSRHPIKRYKKLLADIFPRTPEEEPNDRKISKLCEY 60
           M +ISR I+P CG++C  CPALR  SR P+KRYKKLLADIFP++P+E P++RKI KLCEY
Sbjct: 131 MGIISRKIFPACGNMCVCCPALRSSSRQPVKRYKKLLADIFPKSPDELPSERKIVKLCEY 310

Query: 61  ASKNPLRVPKITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCRDQMPLFASSLLSII 120
           A+KNP R+PKI  YLE+RCYKELR+ + + V ++   + KLL  C+ Q+  FA  +L++I
Sbjct: 311 AAKNPFRIPKIAKYLEERCYKELRSGHIKLVTIITESFNKLLSICKVQIAYFALDVLNVI 490

Query: 121 QILLDQSRQDEVQILGCQTLFDFVNNQRDGTYMFNLDSFILKLCHLAQQVGDDGKVEHLR 180
             LL  S+ + +Q LGCQ+L  F+  Q D TY  N++  + K+C L+++ G+  +   LR
Sbjct: 491 TELLGYSKDETIQTLGCQSLTRFIFCQVDTTYTHNIEKLVRKVCILSREHGETHEKRCLR 670

Query: 181 ASGLQVLSSMVWFMGEFTHISVEFD 205
           AS LQ LS+MVWFM EF++I  +FD
Sbjct: 671 ASSLQCLSAMVWFMAEFSNIFADFD 745


>AV777219 
          Length = 291

 Score =  179 bits (453), Expect = 3e-45
 Identities = 84/91 (92%), Positives = 87/91 (95%)
 Frame = -2

Query: 1   MSVISRNIWPVCGSLCCFCPALRERSRHPIKRYKKLLADIFPRTPEEEPNDRKISKLCEY 60
           MSVISRNIWPVCGSLC FCPALRERSRHPIKRYK LLADIFPRT EEEPNDRKISKLCEY
Sbjct: 275 MSVISRNIWPVCGSLCFFCPALRERSRHPIKRYKHLLADIFPRTQEEEPNDRKISKLCEY 96

Query: 61  ASKNPLRVPKITSYLEQRCYKELRTENYQAV 91
           ASK+PLRVPKITSYLEQRCY+ELR ENYQ+V
Sbjct: 95  ASKDPLRVPKITSYLEQRCYRELRNENYQSV 3


>TC19601 similar to UP|Q94KD1 (Q94KD1) At1g05960/T21E18_20, partial (15%)
          Length = 547

 Score =  167 bits (422), Expect = 1e-41
 Identities = 75/109 (68%), Positives = 89/109 (80%)
 Frame = +2

Query: 1   MSVISRNIWPVCGSLCCFCPALRERSRHPIKRYKKLLADIFPRTPEEEPNDRKISKLCEY 60
           M V+SR + PVCG+LCC CP+LR  SR P+KRYKKLLADIFPR  E EPNDRKI KLC+Y
Sbjct: 221 MGVMSRRVVPVCGNLCCMCPSLRASSRQPVKRYKKLLADIFPRNQEAEPNDRKIGKLCDY 400

Query: 61  ASKNPLRVPKITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCRDQM 109
           ASKNPLR+PK+T  LEQ CYK+LR E + +VKVV+CIYRK L SC++ M
Sbjct: 401 ASKNPLRIPKVTDNLEQICYKDLRNEVFGSVKVVLCIYRKFLSSCKEHM 547


>TC17942 weakly similar to UP|Q94KD1 (Q94KD1) At1g05960/T21E18_20, partial
           (8%)
          Length = 523

 Score = 85.5 bits (210), Expect = 4e-17
 Identities = 39/71 (54%), Positives = 53/71 (73%)
 Frame = +2

Query: 50  NDRKISKLCEYASKNPLRVPKITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCRDQM 109
           NDRKI KLC+YAS + L +P++ + LEQRCYKELR EN  + K+V+CIY+K L SC++QM
Sbjct: 2   NDRKIGKLCDYASPHLLPIPQLVNALEQRCYKELRNENLHSTKIVMCIYKKFLFSCKEQM 181

Query: 110 PLFASSLLSII 120
               ++ LS I
Sbjct: 182 FSLWANTLSYI 214


>AV778252 
          Length = 522

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 48/172 (27%), Positives = 83/172 (47%), Gaps = 3/172 (1%)
 Frame = -1

Query: 340 ECLKES*YAT*YCRCYYPSC*KNKSSAIGGYNWCIE*YDETPAEKHTLLSR*FELRNRSN 399
           EC + +  + *Y + Y+ +C K++++     NWC  *   T  E   +L   F  ++   
Sbjct: 513 ECCQAAYSSN*YYQHYHTTCTKSEATDFSCNNWCYI*SH*TLTEVPAILI*SF--KHWKQ 340

Query: 400 TMEPKI*NGS--R*MPCTVNN*DLRCRSCSRYHGRVVRKHV*YYSYGKNLDCCSL*NFSN 457
            +  K *     R +  T      RCR+ S + G  V +++ YY Y KN +   + N   
Sbjct: 339 WL*VKC*TSICLRNVYITTFKQAWRCRTHS*FDGCSVGEYLEYYHYSKNNNLRYISNCKI 160

Query: 458 SCIYTEFVVSEQGIP*GIISSVTPGNGPCRP*N-QGGCTPHIFSCSCAIVSL 508
           + I++   +S++G P* ++SS+  GNG   P*+ + G   +   C C + SL
Sbjct: 159 NHIHS*CFISKEGFP*CLVSSIAHGNGSS*P*HPELGHIVYSLLCLCHLCSL 4


>TC11743 similar to UP|Q94KD1 (Q94KD1) At1g05960/T21E18_20, partial (3%)
          Length = 416

 Score = 34.3 bits (77), Expect = 0.10
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 3   VISRNIWPVCGSLCCFCP 20
           VISR + P CGSLC FCP
Sbjct: 361 VISRQVLPACGSLCFFCP 414


>AV420729 
          Length = 208

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 16/56 (28%), Positives = 23/56 (40%), Gaps = 9/56 (16%)
 Frame = -2

Query: 12  CGSLCCFCPALRERSRHPIKRYKKLLADIFP---------RTPEEEPNDRKISKLC 58
           C   CC  PA R    HP+ ++   L   +P         +   EE +D + SK C
Sbjct: 183 CKGFCCISPAARICKSHPVVQFSHSLPPSYP*YS*KWNWNKKGSEEISDEQESKRC 16


>TC17237 weakly similar to UP|Q9SS82 (Q9SS82) MZB10.8 protein, partial (18%)
          Length = 712

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 89  QAVKVVICIYRKLLVSCRDQMPLFASSLLSIIQILL 124
           Q+    I IY+ LL+  +D++ LF SSL+  + +L+
Sbjct: 377 QSSNSAIPIYKCLLIKIKDELELFLSSLIFFLLVLV 270


>TC14164 weakly similar to UP|Q8VYH6 (Q8VYH6) AT4g17280/dl4675c, partial
           (44%)
          Length = 1606

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 161 LKLCHLAQQVGDDGKVEHLRASGLQ 185
           + LCH+   VGD G V+  R +GL+
Sbjct: 490 IPLCHIGVVVGDGGSVDFRRTTGLR 416


>TC14368 similar to UP|Q9LLC2 (Q9LLC2) Xyloglucan endotransglycosylase XET2 
           , partial (46%)
          Length = 565

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = +3

Query: 208 SLASLVNSGCFGCFGKLWGYQGRFSKREFYRA 239
           SL  LV  GC GC    W      ++R+F++A
Sbjct: 285 SLIPLVTRGCGGCRRTTWSTITALTRRDFHKA 380


>TC14367 similar to UP|Q9ZRV1 (Q9ZRV1) Xyloglucan endotransglycosylase 1,
           partial (96%)
          Length = 1137

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 12/32 (37%), Positives = 17/32 (52%)
 Frame = +1

Query: 208 SLASLVNSGCFGCFGKLWGYQGRFSKREFYRA 239
           SL  LV  GC GC    W      ++R+F++A
Sbjct: 850 SLIPLVTRGCGGCRRTTWSTITALTRRDFHKA 945


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.361    0.161    0.605 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,362,360
Number of Sequences: 28460
Number of extensions: 314229
Number of successful extensions: 3394
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2480
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 2632
length of query: 1043
length of database: 4,897,600
effective HSP length: 100
effective length of query: 943
effective length of database: 2,051,600
effective search space: 1934658800
effective search space used: 1934658800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 60 (27.7 bits)