BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.7 + phase: 0
(261 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11215 275 7e-75
AV423113 100 2e-22
TC9250 UP|Q9FLP6 (Q9FLP6) Ubiquitin-like protein SMT3-like (AT5g... 29 0.93
TC13676 weakly similar to UP|O80500 (O80500) At2g44600 protein (... 28 1.6
TC14568 28 2.1
AI967536 28 2.1
AV767473 27 2.7
TC19139 27 2.7
TC13797 similar to AAR24648 (AAR24648) At3g53720, partial (10%) 27 2.7
TC17252 similar to UP|O04237 (O04237) Transcription factor, part... 27 3.5
TC19126 similar to UP|Q8W435 (Q8W435) CYP1 (Peptidyl-prolyl cis... 27 3.5
AV776568 27 4.6
BP035958 27 4.6
TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.3... 26 6.1
TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor,... 26 6.1
CB827058 26 6.1
AV407897 26 6.1
TC8330 weakly similar to GB|AAM61257.1|21536925|AY084696 calmodu... 26 7.9
TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , part... 26 7.9
TC18106 similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-li... 26 7.9
>TC11215
Length = 667
Score = 275 bits (702), Expect = 7e-75
Identities = 128/151 (84%), Positives = 143/151 (93%)
Frame = +1
Query: 110 IDLLVKILCCLHHDQLRAVFHVSQRIRKAVIVARQFHFNYTTPDRSRLEMLSTMTPRPSE 169
+D+LVK+LC LHHDQL+AVFHVS+RIRKAVIVARQFHFNYTTPDRSR E+LSTMTPRP++
Sbjct: 1 MDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRSRQELLSTMTPRPND 180
Query: 170 HWPFLCRGDGKGLRIPSPHTPKAPRHGPRPPSRLKVSEMRQVTAVLFKESAFASRCMVPS 229
HWPFLC+GDGKG+R+PSPHTPKAPRHGPRPPSRLKVSEMRQV AVLF+ESAF RC+VPS
Sbjct: 181 HWPFLCKGDGKGVRVPSPHTPKAPRHGPRPPSRLKVSEMRQVAAVLFQESAFPPRCLVPS 360
Query: 230 VIPKPQCKSVASNRVLFCEDELCKAVAQNKL 260
VIPKP CKS+AS RVLF EDELC+AVAQNKL
Sbjct: 361 VIPKPLCKSLASTRVLFYEDELCQAVAQNKL 453
>AV423113
Length = 392
Score = 100 bits (250), Expect = 2e-22
Identities = 55/97 (56%), Positives = 71/97 (72%), Gaps = 1/97 (1%)
Frame = +1
Query: 7 RKGRRKLKKSGTKYLKPGTLAQLRCSKYLGSGSGAGRVCNDIGKKRVELLNLEKNEDHEG 66
+KGR++L+ S KYLKPGTLAQLRC++ SGSG G+ C D+GKKRV + L E
Sbjct: 124 KKGRKQLRSSKNKYLKPGTLAQLRCNR--SSGSGGGKACTDLGKKRV-AVGLNSRE---- 282
Query: 67 KVFDKSPLML-SPVNLVKQSSSVGTPKTPRIDECQSE 102
+KSP+ML PVNLV+Q+S +GTPKTPRI+E QS+
Sbjct: 283 -TVEKSPVMLXXPVNLVRQNSLLGTPKTPRIEEPQSD 390
>TC9250 UP|Q9FLP6 (Q9FLP6) Ubiquitin-like protein SMT3-like
(AT5g55160/MCO15_11) (Small ubiquitin-like modifier 2),
partial (22%)
Length = 1363
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/32 (46%), Positives = 19/32 (58%)
Frame = +1
Query: 13 LKKSGTKYLKPGTLAQLRCSKYLGSGSGAGRV 44
L+K GT + G + R K+LGSGSG G V
Sbjct: 1111 LEKGGTGFAGHGDHLEARDFKHLGSGSGLGLV 1206
>TC13676 weakly similar to UP|O80500 (O80500) At2g44600 protein
(At2g44600/F16B22.9), partial (9%)
Length = 698
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 182 LRIPSPHTPKAPRHGPRP--PSRLKVSEMRQVTAVLFKESAFASRCMVPSVIPKPQCKSV 239
LR+ SP TP+ R GP P PS + + +A S + C P P+P +V
Sbjct: 351 LRLLSPGTPRTSRRGPSPITPSCHRKI*SQSSSAAAQSPSLGFTLCYSPEKRPRPPPGAV 530
Query: 240 ASNR 243
R
Sbjct: 531 IPQR 542
>TC14568
Length = 1388
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/30 (46%), Positives = 19/30 (62%), Gaps = 6/30 (20%)
Frame = +1
Query: 12 KLKKSGTKYLKPGTLAQLR------CSKYL 35
KL KSG +Y++ TLA++R CS YL
Sbjct: 442 KLSKSGARYMEKYTLAKMRKIGGSICSSYL 531
>AI967536
Length = 431
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 186 SPHTPKAPRHGPRPPSRLKVSEMRQ--VTAVLFKESAFASRC 225
+P P P+H P P S++K E R+ V ++ + AS C
Sbjct: 82 APPPPPCPKHRPSPISKMKAMETRRCCVNSI*TWPTGLASAC 207
>AV767473
Length = 374
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 154 RSRLEMLSTMTPRPSEHWPFLCRGDGKGLRIPSPHTPK 191
R++ ML+ PR H P + R + + PSP TP+
Sbjct: 201 RTKPSMLTLPCPRQRPHTPAMSRCQTRPIL*PSPSTPR 314
>TC19139
Length = 476
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 11 RKLKKSGTKYLKPGTLAQLR 30
RKL KSGTK L+ T+A++R
Sbjct: 210 RKLSKSGTKCLEKNTVAKMR 269
>TC13797 similar to AAR24648 (AAR24648) At3g53720, partial (10%)
Length = 444
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 181 GLRIPSPHTPKAPRHGPRPPSR 202
GLR+P+PH P R P+P R
Sbjct: 251 GLRLPAPHRPNHHRPRPQPLPR 316
>TC17252 similar to UP|O04237 (O04237) Transcription factor, partial (21%)
Length = 492
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/18 (55%), Positives = 11/18 (60%)
Frame = -2
Query: 185 PSPHTPKAPRHGPRPPSR 202
P P P+ PR PRPP R
Sbjct: 482 PKPLPPRPPRPNPRPPPR 429
>TC19126 similar to UP|Q8W435 (Q8W435) CYP1 (Peptidyl-prolyl cis-trans
isomerase) (PPIase) (Rotamase) , partial (39%)
Length = 277
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 4/46 (8%)
Frame = +1
Query: 146 HFNYTTPDRSR----LEMLSTMTPRPSEHWPFLCRGDGKGLRIPSP 187
+F+ T DR +E+ + +TPR + ++ LC GD RI +P
Sbjct: 85 YFDMTIGDRPAGRIVMELFADVTPRTAXNFRALCTGDXGTGRIGNP 222
>AV776568
Length = 628
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 185 PSPHTPKAPRHGPRPPSR 202
P P TP P H P PP R
Sbjct: 209 PPPSTP*CPAHAPPPPRR 262
>BP035958
Length = 574
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +2
Query: 146 HFNYTTPDRSRLEMLSTMTPRPSEHWPFLCRGDGKGLRIPS-PHTPKA--PRHGPRPPSR 202
H N P L + T RP H G G LR+P+ P P+ P+ G PSR
Sbjct: 83 HHNLRHPPHDPLRAIRIHTHRPRLHRRLGGLGGGLRLRLPTRPLPPRVLPPQRGVAHPSR 262
>TC14274 weakly similar to GB|AAF79559.1|8778551|AC022464 F22G5.35
{Arabidopsis thaliana;} , partial (16%)
Length = 1208
Score = 26.2 bits (56), Expect = 6.1
Identities = 19/58 (32%), Positives = 23/58 (38%)
Frame = +3
Query: 185 PSPHTPKAPRHGPRPPSRLKVSEMRQVTAVLFKESAFASRCMVPSVIPKPQCKSVASN 242
P+P TP P PPS VS +T L S S P + P P AS+
Sbjct: 186 PNPTTPATP-----PPSGTSVSPSLSLTPSLTPFSPSRSSTPNPPIPPNPSSPPSASS 344
>TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
subunit, partial (81%)
Length = 1263
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/38 (36%), Positives = 17/38 (43%)
Frame = +1
Query: 172 PFLCRGDGKGLRIPSPHTPKAPRHGPRPPSRLKVSEMR 209
P L + R P P+ P+H P PP R V E R
Sbjct: 133 PLLLQDRRLQTRRPLLSPPQPPQHLPHPPPRQHVPETR 246
>CB827058
Length = 555
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/38 (36%), Positives = 18/38 (46%)
Frame = +1
Query: 72 SPLMLSPVNLVKQSSSVGTPKTPRIDECQSESRLESLP 109
SP++ VN KQ SS TP++ QS R P
Sbjct: 262 SPIVPRTVNSSKQKSSTIAVPTPQVKRSQSAERQRQRP 375
>AV407897
Length = 295
Score = 26.2 bits (56), Expect = 6.1
Identities = 18/51 (35%), Positives = 20/51 (38%), Gaps = 2/51 (3%)
Frame = +1
Query: 162 TMTPRPSEHWPFLCRGDGKGLRIPSPHTPK--APRHGPRPPSRLKVSEMRQ 210
T PR H PF K P P TP+ PR PP R + RQ
Sbjct: 133 TWPPRDHYHHPFQRSNPPKINPFPQPQTPRRQIPRARAWPPRRRRKPLRRQ 285
>TC8330 weakly similar to GB|AAM61257.1|21536925|AY084696 calmodulin-like
protein {Arabidopsis thaliana;} , partial (72%)
Length = 1174
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +1
Query: 161 STMTPRPSEHWPFLCRGDGKGLRIPSPH---TPKAPRHGPRPP 200
ST TP+PS P K P P +P PR P PP
Sbjct: 88 STSTPKPSNSAPNASSDLPKRTTSPDPTHPLSPPPPRTSPPPP 216
>TC17983 similar to UP|Q9XEX5 (Q9XEX5) Cytidine deaminase , partial (42%)
Length = 519
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 185 PSPHTPKAPRHGPRPPSRLKVSEMRQVTAVLFKESAFASRCMVPSVIPKP 234
P+P P+ R PRP + L++ R+ T +L S+ +P P P
Sbjct: 99 PTPPKPRQRRKNPRPTTHLQLPGRRRRT-LLIGSDLHRSQPRIPWPPPPP 245
>TC18106 similar to UP|Q8LEJ6 (Q8LEJ6) Arabinogalactan protein-like, partial
(42%)
Length = 436
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +2
Query: 178 DGKGLRIPSPHTPKAPRHGPRP 199
+GKG IPSP +P P+H P P
Sbjct: 8 NGKGKSIPSPPSP-PPQHVPLP 70
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,027,000
Number of Sequences: 28460
Number of extensions: 81416
Number of successful extensions: 639
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of query: 261
length of database: 4,897,600
effective HSP length: 88
effective length of query: 173
effective length of database: 2,393,120
effective search space: 414009760
effective search space used: 414009760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC136504.7