TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136504.6 - phase: 0 /pseudo
         (417 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW719719                                                              105  2e-23
TC8642 similar to UP|Q9ASR5 (Q9ASR5) AT4g35920/F4B14_190, partia...    41  4e-08
BP034228                                                               31  0.43
AV767498                                                               29  1.6
TC15359 weakly similar to UP|Q84MB3 (Q84MB3) At1g06620, partial ...    28  2.1
TC14974                                                                28  2.8
AU252010                                                               28  2.8
BP068789                                                               28  3.7
BP041007                                                               28  3.7
TC17807 weakly similar to UP|Q9FHE4 (Q9FHE4) Genomic DNA, chromo...    27  4.8
TC8245                                                                 27  4.8
CN825041                                                               27  6.3
TC9977 similar to UP|Q9FNI3 (Q9FNI3) Similarity to RAV2-like DNA...    27  6.3
TC16909 similar to UP|Q9M205 (Q9M205) Regulatory protein-like, p...    27  8.2

>AW719719 
          Length = 512

 Score =  105 bits (261), Expect = 2e-23
 Identities = 51/59 (86%), Positives = 55/59 (92%)
 Frame = +1

Query: 1   MASSWEQFGEIANVAQLTGLDAVKLIGMIVKAANTARMHKKNCRQFAQHLKLIGNLLDQ 59
           MASSWE FGE+ANVAQLTGLDAV+LIGMIVKA +TARMHKKNCRQFA  LKLIGNLL+Q
Sbjct: 334 MASSWEHFGEVANVAQLTGLDAVRLIGMIVKAXSTARMHKKNCRQFALXLKLIGNLLEQ 510


>TC8642 similar to UP|Q9ASR5 (Q9ASR5) AT4g35920/F4B14_190, partial (19%)
          Length = 651

 Score = 41.2 bits (95), Expect(2) = 4e-08
 Identities = 22/35 (62%), Positives = 26/35 (73%)
 Frame = +2

Query: 337 IFCRSMQ*LYCIFVGFILLLLYLLHKEEA*EDDEH 371
           I  RSM *+  IF+ F+LLLLYLL KE+A ED EH
Sbjct: 50  ILWRSM**IDGIFINFVLLLLYLLRKEKASEDAEH 154



 Score = 32.7 bits (73), Expect(2) = 4e-08
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +3

Query: 322 CGTFSKIATVATNRPI 337
           CGTFSKIA+VA NRPI
Sbjct: 3   CGTFSKIASVAKNRPI 50


>BP034228 
          Length = 460

 Score = 30.8 bits (68), Expect = 0.43
 Identities = 13/40 (32%), Positives = 20/40 (49%)
 Frame = +3

Query: 6   EQFGEIANVAQLTGLDAVKLIGMIVKAANTARMHKKNCRQ 45
           + +G   N+ Q  GLD V   G  + + +T  +H K C Q
Sbjct: 294 QNYGTSQNLKQFLGLDVVDTTGFPILSHSTLAIHMKKCNQ 413


>AV767498 
          Length = 554

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 18/43 (41%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
 Frame = +1

Query: 35 TARMHKKNCRQFAQHLKLIGNLLDQL-KISELKKYPETREPLE 76
          T++  K+   QFA HL      L +L KIS+LKKY  T + +E
Sbjct: 46 TSQSCKQPTSQFASHLVQKSTTLIKLSKISQLKKYSMTEQVME 174


>TC15359 weakly similar to UP|Q84MB3 (Q84MB3) At1g06620, partial (27%)
          Length = 575

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +3

Query: 393 KHCHIENVYLSKFLIYFVR 411
           KHC  EN+ LS F++ FVR
Sbjct: 390 KHCSCENIALSMFVLLFVR 446


>TC14974 
          Length = 854

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 18/82 (21%), Positives = 40/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 103 MGWNIVYQFRKAQNEIDRYLRLVPLITLVDNARATRVRERLEVIEKDQCAYTLDDEDQKV 162
           + WN+        N +DR ++L  ++ + D   A     RL  +++   + + DDE++++
Sbjct: 422 ISWNL--------NRLDRLVKLKDILVMEDEMSAELANSRLTRLQEVIMSCSDDDEEERL 577

Query: 163 QTVFMK-PEHDKEDTVVLKKTL 183
           Q   ++  EH++    +  K L
Sbjct: 578 QNKSIELYEHERWSKYIELKRL 643


>AU252010 
          Length = 328

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 194 EALKKENEKLQLELHHSQANMDINQCEF 221
           E LKKEN+ +Q+EL H + + DIN   +
Sbjct: 241 ERLKKENDGMQIELRHLKGD-DINSLNY 321


>BP068789 
          Length = 384

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 238 EKLSPEDNYQIVEYSNNSHSDAN 260
           E  +P+ N+   +YS+NSHS++N
Sbjct: 201 EPRAPDTNHHSYQYSSNSHSNSN 133


>BP041007 
          Length = 527

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 17/59 (28%), Positives = 27/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 282 IRCQLEVHISRKIGILIYLLVVLNLIFIFSFAGIKTFFYPCGTFSKIATVA-TNRPIFC 339
           I C   +   R   I I   +++   F+FS       F    T +++ TVA T+RP+ C
Sbjct: 283 ITCNFVIRKIRTFPIWISQSIMVKAAFLFSSEAKPALFVTSSTANELITVASTSRPMCC 459


>TC17807 weakly similar to UP|Q9FHE4 (Q9FHE4) Genomic DNA, chromosome 5, TAC
           clone:K17O22 (AT5g45100/K17O22_9), partial (26%)
          Length = 844

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = -3

Query: 107 IVYQFRKAQNEIDRYL-RLVPLITLVDNARATRVRERLEVIEKDQCAYTLDDEDQKVQTV 165
           ++YQF+  Q+EIDR L      + +       R    L  + ++  A  L ++D++VQ +
Sbjct: 392 VLYQFQNQQSEIDRVLAHHTEKVRMEMEEHKMRQSRMLACVIQETVAKKLKEKDEEVQKM 213

Query: 166 FMKPEHDKEDTVVLKKTLSCSYPNFSFTEALKKENE 201
                  K + V+ ++  S S  N  F   L + NE
Sbjct: 212 ------GKLNWVLQERVKSLSAEN-QFWRDLAQTNE 126


>TC8245 
          Length = 623

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 25/86 (29%), Positives = 37/86 (42%)
 Frame = -1

Query: 160 QKVQTVFMKPEHDKEDTVVLKKTLSCSYPNFSFTEALKKENEKLQLELHHSQANMDINQC 219
           Q+  T F+     +++T    KTL  +  N S T  L +    L L       N+ +   
Sbjct: 500 QQFHTKFILMSSQEKETPPQ*KTLLSACSNISITIVLWRIPNILSL----LAGNVGLKS* 333

Query: 220 EFIQRLLDVTNFAAYSLPEKLSPEDN 245
            F+      TNF AY L +K S +DN
Sbjct: 332 AFLN-----TNFVAYRLEKKSSLQDN 270


>CN825041 
          Length = 673

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 12/37 (32%), Positives = 23/37 (61%)
 Frame = -1

Query: 42  NCRQFAQHLKLIGNLLDQLKISELKKYPETREPLEQL 78
           NC  F  HLKL+ +    L+  +L++Y +  +PL+++
Sbjct: 328 NC--FLPHLKLL*HKYSNLQEEDLQRYSQIHKPLDKI 224


>TC9977 similar to UP|Q9FNI3 (Q9FNI3) Similarity to RAV2-like DNA-binding
           protein, partial (5%)
          Length = 468

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = +3

Query: 183 LSCSYPNFSFTEALKKENEKLQLELHHSQANMDINQCEFIQRLLDVTNFAAYSLPEKLSP 242
           +S S P+ S +  L+     ++ +  H  +  + +             +   ++P     
Sbjct: 123 MSSSSPSSSSSRVLRLFGVNMECQAEHDDSGPECS-------------YNGDTVPMNQGT 263

Query: 243 EDNYQIVEYSNNSHSDAN 260
           + N+   +YS+NSHS++N
Sbjct: 264 DTNHHFYQYSSNSHSNSN 317


>TC16909 similar to UP|Q9M205 (Q9M205) Regulatory protein-like, partial
           (23%)
          Length = 520

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 186 SYPNFSFTEALKKENEKLQLELHHS 210
           S PN +        NEKL L+LHHS
Sbjct: 426 STPNLTLYSFTTMVNEKLHLDLHHS 352


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,339,408
Number of Sequences: 28460
Number of extensions: 103058
Number of successful extensions: 769
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of query: 417
length of database: 4,897,600
effective HSP length: 93
effective length of query: 324
effective length of database: 2,250,820
effective search space: 729265680
effective search space used: 729265680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)