BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.5 + phase: 0
(201 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP047841 110 2e-25
TC12418 36 5e-08
BF177610 31 0.13
TC8066 similar to UP|BAC81645 (BAC81645) Class1 chitinase (Fragm... 30 0.22
TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,... 30 0.37
AV427333 29 0.64
TC16599 similar to UP|Q8W239 (Q8W239) GT-2 factor (Fragment), pa... 28 0.83
BP032462 28 1.1
BP040850 28 1.1
TC15713 28 1.1
BP034367 28 1.1
AW719473 28 1.4
TC12839 similar to GB|BAB01914.1|9294011|AP001307 casein kinase-... 27 1.8
TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase... 27 1.8
TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific... 27 2.4
BP071315 27 2.4
TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determin... 27 3.2
TC18520 26 4.1
AV409108 26 4.1
AW720416 26 5.4
>BP047841
Length = 406
Score = 110 bits (274), Expect = 2e-25
Identities = 54/55 (98%), Positives = 55/55 (99%)
Frame = -1
Query: 147 ERLGDGSKPTAIIGDVADELNLDLVVISMEAIHTKHIDANLLAEFIPCPVMLLPL 201
ERLG+GSKPTAIIGDVADELNLDLVVISMEAIHTKHIDANLLAEFIPCPVMLLPL
Sbjct: 406 ERLGEGSKPTAIIGDVADELNLDLVVISMEAIHTKHIDANLLAEFIPCPVMLLPL 242
>TC12418
Length = 552
Score = 36.2 bits (82), Expect(2) = 5e-08
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 172 VISMEAIHTKHIDANLLAEFIPCPV 196
++++E IHT+HIDANLL +PCPV
Sbjct: 418 LLALETIHTQHIDANLLV--VPCPV 486
Score = 35.8 bits (81), Expect(2) = 5e-08
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +2
Query: 143 YKLLERLGDGSKPTAIIGDVADE 165
Y LLERLG+GS+PTA GDVADE
Sbjct: 335 YTLLERLGEGSEPTA--GDVADE 397
>BF177610
Length = 257
Score = 31.2 bits (69), Expect = 0.13
Identities = 17/42 (40%), Positives = 21/42 (49%)
Frame = +1
Query: 7 LPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLP 48
L PL + SL KPS+ P +T + FNP TLH P
Sbjct: 34 LQPLSATQRSLFKRKPSI----PSPLLTPNLFNPSETLHNKP 147
>TC8066 similar to UP|BAC81645 (BAC81645) Class1 chitinase (Fragment),
complete
Length = 1392
Score = 30.4 bits (67), Expect = 0.22
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -1
Query: 70 TQFKHLLLPITDRKPYLSEGTKQAIATTIALANKY 104
T FK+ +PIT + PY +K+ I TTI A+KY
Sbjct: 1167 THFKNYCIPITFKNPYYLTISKR-IGTTITYASKY 1066
>TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,
chloroplast precursor (EF-Tu), partial (58%)
Length = 1146
Score = 29.6 bits (65), Expect = 0.37
Identities = 18/67 (26%), Positives = 33/67 (48%), Gaps = 8/67 (11%)
Frame = +3
Query: 16 SLISPKP---SLFFNNPPISITSHFFNPP-----STLHTLPSGIIVKAKPQEPEVAIATD 67
SL+ P P + ++PP+ + F NPP +TL LP +++ +P+ A +
Sbjct: 168 SLLFPLPLPQTPITHHPPLLLLQSFHNPPQRAAATTLRPLPPPLLLPHRPRRSRQVRAQE 347
Query: 68 SFTQFKH 74
+ Q +H
Sbjct: 348 TPCQHRH 368
>AV427333
Length = 387
Score = 28.9 bits (63), Expect = 0.64
Identities = 17/43 (39%), Positives = 19/43 (43%)
Frame = +3
Query: 6 YLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLP 48
Y PP P P PS +F +PP SH F PP H P
Sbjct: 102 YNPPTPPSHPFNPPPTPSHYFKSPP--PPSHSFAPPPRGHPSP 224
>TC16599 similar to UP|Q8W239 (Q8W239) GT-2 factor (Fragment), partial (37%)
Length = 693
Score = 28.5 bits (62), Expect = 0.83
Identities = 14/32 (43%), Positives = 20/32 (61%), Gaps = 4/32 (12%)
Frame = -2
Query: 5 HYLPPLQLVKPSLIS----PKPSLFFNNPPIS 32
H LPPL ++ P S P PSL F++PP++
Sbjct: 203 HRLPPLPILSPPSSSNSPPPLPSLPFSSPPLA 108
>BP032462
Length = 534
Score = 28.1 bits (61), Expect = 1.1
Identities = 18/37 (48%), Positives = 23/37 (61%), Gaps = 1/37 (2%)
Frame = +1
Query: 34 TSHFFNPPSTLHTLPSGIIVKAKPQEPEVA-IATDSF 69
TS FFN PSTL T + + KA Q+P +A I+T F
Sbjct: 241 TSTFFNQPSTLST--ANYVPKAPFQKPRLA*ISTSPF 345
>BP040850
Length = 588
Score = 28.1 bits (61), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = +3
Query: 13 VKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSG 50
V SL + PS+F N P+S+ + TLH P G
Sbjct: 75 VAVSLTTTNPSIFTINKPLSVIPPLSSASYTLHLTPPG 188
>TC15713
Length = 493
Score = 28.1 bits (61), Expect = 1.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 12 LVKPSLISPKPSLFFNNPPISITSHFFNPPSTLH 45
LV S SP+P+ FF+ P+ ++ F PP T H
Sbjct: 128 LVTKSSSSPQPTTFFHELPL-VSPPFMAPPDTPH 30
>BP034367
Length = 545
Score = 28.1 bits (61), Expect = 1.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 25 FFNNPPIS-ITSHFFN--PPSTLHTLPSGIIVKAKPQEP 60
FFN PPIS FN PP + L ++ + PQEP
Sbjct: 31 FFNLPPISQFKRRRFNMMPPGLVSNLQEALLNRKSPQEP 147
>AW719473
Length = 555
Score = 27.7 bits (60), Expect = 1.4
Identities = 17/37 (45%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Frame = +3
Query: 14 KPSLISPKPSLFFNNPPISITSHF-FNPPSTLHTLPS 49
KPS IS PS+ F++ P S SH F P + L PS
Sbjct: 48 KPSSISTLPSISFSSSPSSSHSHLTFIPKTFLFRPPS 158
>TC12839 similar to GB|BAB01914.1|9294011|AP001307 casein kinase-like
protein {Arabidopsis thaliana;} , partial (5%)
Length = 806
Score = 27.3 bits (59), Expect = 1.8
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -2
Query: 171 VVISMEAIHTKHIDANLLAEFIPCPVMLL 199
V S H KH+D ++L + PC V L
Sbjct: 787 VQFSHSNFHQKHVDLHILGQIHPCQVFFL 701
>TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase subunit
RPT2a, partial (69%)
Length = 916
Score = 27.3 bits (59), Expect = 1.8
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 149 LGDGSKPTAIIGDVADELNLDLVVI-SMEAIHTKHIDAN 186
LGDG K + VAD+L+ +V I ++A+ TK DA+
Sbjct: 607 LGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAH 723
>TC14326 weakly similar to UP|EXLP_TOBAC (Q03211) Pistil-specific
extensin-like protein precursor (PELP), partial (11%)
Length = 630
Score = 26.9 bits (58), Expect = 2.4
Identities = 18/51 (35%), Positives = 25/51 (48%)
Frame = +2
Query: 7 LPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKP 57
+P LVK P+P + +PPI + +F PP PS IVK+ P
Sbjct: 194 VPTPPLVKAPTPPPQPPVKAPSPPIVKSPPYFPPPV---KAPSPPIVKSPP 337
>BP071315
Length = 361
Score = 26.9 bits (58), Expect = 2.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 16 SLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEPEV 62
S++ P+ +NNP T H + P+ L L I+ + + PE+
Sbjct: 149 SILQ*NPNKSYNNPLKHFTIHIKSNPNKLKILAQNIMSQISTETPEL 289
>TC13687 similar to UP|Q9MBA2 (Q9MBA2) MinD (Septum site-determining MinD)
(At5g24020), partial (45%)
Length = 470
Score = 26.6 bits (57), Expect = 3.2
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 21 KPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEPEVAIATDS 68
KP ++++PP+ S PP T + ++ P P A AT +
Sbjct: 63 KPRAWWSSPPVKAASERPQPPPTWASPSPASASRSSPSTPMSACATST 206
>TC18520
Length = 499
Score = 26.2 bits (56), Expect = 4.1
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 9/35 (25%)
Frame = +1
Query: 11 QLVKPSLISPKPSLFF---------NNPPISITSH 36
+L KP+L SPKP+L F NPP +SH
Sbjct: 40 KLTKPNLHSPKPALLFPTQLQNKTKPNPPPLQSSH 144
>AV409108
Length = 359
Score = 26.2 bits (56), Expect = 4.1
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = +1
Query: 32 SITSHFFNPPSTLHTLPSGIIVKAKPQEPEVA 63
SITS F+ P+TL TLP + V A P A
Sbjct: 64 SITSLPFHLPTTLPTLPRSLNVNASLSSPLTA 159
>AW720416
Length = 192
Score = 25.8 bits (55), Expect = 5.4
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 15 PSLISPKPSL--FFNNPPISITSHFF 38
PS ISP PSL FF+ PP+ + H++
Sbjct: 91 PSSISPSPSLFSFFSXPPL-LHRHYY 165
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,598,090
Number of Sequences: 28460
Number of extensions: 54730
Number of successful extensions: 395
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of query: 201
length of database: 4,897,600
effective HSP length: 86
effective length of query: 115
effective length of database: 2,450,040
effective search space: 281754600
effective search space used: 281754600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC136504.5