BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.3 + phase: 0 /pseudo
(513 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV406732 174 4e-44
BP057961 128 2e-30
AV768956 75 2e-14
TC18588 69 2e-12
TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, part... 32 0.32
TC9423 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protein... 32 0.32
BP085958 31 0.42
AV415922 31 0.55
TC7882 homologue to UP|O49875 (O49875) Adenine nucleotide transl... 30 0.72
AV426390 30 0.72
TC12426 30 0.72
TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear phospho... 30 0.72
TC10030 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partia... 30 0.94
TC8441 homologue to UP|ADT2_SOLTU (P27081) ADP,ATP carrier prote... 30 1.2
TC12793 similar to AAO14864 (AAO14864) Calcineurin B-like protei... 29 1.6
BP033137 29 1.6
TC8286 homologue to GB|AAD14482.1|4249385|T2K10 T2K10.11 {Arabid... 29 1.6
TC14125 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 29 2.1
TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1,... 29 2.1
AV766700 29 2.1
>AV406732
Length = 422
Score = 174 bits (440), Expect = 4e-44
Identities = 102/140 (72%), Positives = 109/140 (77%)
Frame = +1
Query: 270 QCVLDLMVLEESRLGIPAAQTKEKHHSTSGNHILHITSPLHKLLWEDMLPIMSFMQFSTP 329
QCVLDLMVLEES LGI AA TKEKHHST G+ I HITSPL KL W++ML I+SFMQF T
Sbjct: 1 QCVLDLMVLEESHLGILAAWTKEKHHST*GHCIRHITSPLPKLKWDEMLLILSFMQFLTL 180
Query: 330 VPHSHT*MTQLIR*FPRSSIL*SKQIDIRLCHLIRISPLNTVMT*VQIRQLKFPF*I*Q* 389
PHSHT*MTQLI SS L*SKQI + L LI ISP +TVM VQIRQL FP *I*+*
Sbjct: 181 GPHSHT*MTQLIHLLRISSTL*SKQIGLHLNQLILISPSSTVMPSVQIRQLNFPI*I*R* 360
Query: 390 KVEMIIMSRIQLYLFLVRLK 409
KVEMIIMSRI Y FLVRLK
Sbjct: 361 KVEMIIMSRIH*YQFLVRLK 420
>BP057961
Length = 398
Score = 128 bits (322), Expect = 2e-30
Identities = 64/85 (75%), Positives = 67/85 (78%)
Frame = +1
Query: 79 DSPMIVIRRSLSPPAMKLIRLLLLDFCILPMFRLGHHLYGFWWHWIPAVTCFGYLVIVPV 138
DSP I SLSPPAM LI +LL D CILPMFRLGHHLYG WWHWI VTC GYLVIVPV
Sbjct: 139 DSPAISTHLSLSPPAMTLIXMLLXDICILPMFRLGHHLYGLWWHWILGVTCSGYLVIVPV 318
Query: 139 ACAV*RHKMER*LILISMNLISHLQ 163
ACA *R K+E *LILISM+L SH Q
Sbjct: 319 ACAG*REKVEV*LILISMSLRSHPQ 393
>AV768956
Length = 420
Score = 75.5 bits (184), Expect = 2e-14
Identities = 46/70 (65%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Frame = -2
Query: 441 RT*TLVGRNLTVLKKCSP--YLLTNLILLLFPLLLLLILWLDQTHQVILEDFHLISHLGR 498
+T* LVGRN VL+K SP YLLT+L LLLFPLLLL WL QTHQVIL F I+ LG
Sbjct: 416 KT*FLVGRNRIVLRKYSPTHYLLTHLTLLLFPLLLL*TPWLHQTHQVILGGFRQITRLG* 237
Query: 499 SLLLHLW*SF 508
+LLLHL SF
Sbjct: 236 NLLLHL*WSF 207
>TC18588
Length = 390
Score = 68.6 bits (166), Expect = 2e-12
Identities = 47/98 (47%), Positives = 52/98 (52%), Gaps = 3/98 (3%)
Frame = +1
Query: 5 IRHWCC---CCC*WCWC*VYLHTVATAWGNSVWIFIIDSRIQ*PRF*ALVMMNCYLIKEL 61
I W C CC W W *V LH+ T NS DSRI+ F Y +EL
Sbjct: 103 ISSWLCHNWCCWGWWW-*V*LHSAVTVPANSDSTSTTDSRIRSRAFWVSTSYG-YPTREL 276
Query: 62 LNTMLLWFIEIAFFMAGDSPMIVIRRSLSPPAMKLIRL 99
L+TMLLW EI F+A DSP I SLSPPAM LIRL
Sbjct: 277 LSTMLLWSTEIVSFVAVDSPAISTHLSLSPPAMTLIRL 390
>TC19740 similar to UP|FKH_DROME (P14734) Fork head protein, partial (4%)
Length = 622
Score = 31.6 bits (70), Expect = 0.32
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 9 CCCCC*WCWC 18
CCCC WCWC
Sbjct: 172 CCCCWNWCWC 143
Score = 30.0 bits (66), Expect = 0.94
Identities = 12/31 (38%), Positives = 16/31 (50%), Gaps = 6/31 (19%)
Frame = -1
Query: 7 HWCCCC-C*WCWC-----*VYLHTVATAWGN 31
+WC CC C* CWC +Y+ + W N
Sbjct: 157 NWCWCC*C*CCWCWGL*GSLYIIAIGVKWRN 65
>TC9423 similar to UP|Q8S8Z8 (Q8S8Z8) Syringolide-induced protein B13-1-9,
partial (53%)
Length = 969
Score = 31.6 bits (70), Expect = 0.32
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 9 CCCCC*WCWC 18
CCCCC W WC
Sbjct: 331 CCCCCCWWWC 302
>BP085958
Length = 507
Score = 31.2 bits (69), Expect = 0.42
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 4 YIRHWCCCCC*WCWC*VYLHTV 25
+ R +CCCCC CWC V + V
Sbjct: 137 HFRFFCCCCC-CCWCLVMVSMV 75
>AV415922
Length = 422
Score = 30.8 bits (68), Expect = 0.55
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 9 CCCCC*WCWC* 19
CCCCC CWC*
Sbjct: 199 CCCCCHRCWC* 167
>TC7882 homologue to UP|O49875 (O49875) Adenine nucleotide translocator,
complete
Length = 1656
Score = 30.4 bits (67), Expect = 0.72
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Frame = +3
Query: 8 WC----CCCC*WCWC*VYLHTVA 26
WC CCC WCWC +L VA
Sbjct: 1254 WC*HPPCCC--WCWCACWLRQVA 1316
>AV426390
Length = 399
Score = 30.4 bits (67), Expect = 0.72
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 8 WCCCCC*WCWC*VYL 22
WCCCCC C C +L
Sbjct: 109 WCCCCCCCCGCCCWL 65
>TC12426
Length = 539
Score = 30.4 bits (67), Expect = 0.72
Identities = 21/48 (43%), Positives = 29/48 (59%), Gaps = 5/48 (10%)
Frame = +3
Query: 460 LLTNLILLLFPLL---LLL--ILWLDQTHQVILEDFHLISHLGRSLLL 502
+L L++LL+P+L L+L +L LD HQ+ILED L L LL
Sbjct: 108 ILKQLVVLLYPILTRFLILGPLLELDLPHQIILEDQLLAGILDNKHLL 251
>TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear
phosphoprotein-like protein, partial (5%)
Length = 789
Score = 30.4 bits (67), Expect = 0.72
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 5 IRHWCCCCC*WCWC*VYLHT 24
+ CCCCC CWC* ++++
Sbjct: 558 VEECCCCCC--CWC*RFINS 505
>TC10030 similar to UP|Q94JM3 (Q94JM3) AT5g62000/mtg10_20, partial (13%)
Length = 588
Score = 30.0 bits (66), Expect = 0.94
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 7 HWCCCCC*WC 16
H CCCCC WC
Sbjct: 273 HRCCCCCSWC 244
>TC8441 homologue to UP|ADT2_SOLTU (P27081) ADP,ATP carrier protein,
mitochondrial precursor (ADP/ATP translocase) (Adenine
nucleotide translocator) (ANT) (Fragment), partial (48%)
Length = 884
Score = 29.6 bits (65), Expect = 1.2
Identities = 15/32 (46%), Positives = 16/32 (49%), Gaps = 4/32 (12%)
Frame = +3
Query: 8 WC---CCCC*WCWC*VYLHTVA-TAWGNSVWI 35
WC CCC WCWC +L VA VWI
Sbjct: 468 WC*HPSCCC-WCWCACWL*QVAGGVLRQEVWI 560
>TC12793 similar to AAO14864 (AAO14864) Calcineurin B-like protein, partial
(44%)
Length = 534
Score = 29.3 bits (64), Expect = 1.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 6 RHWCCCCC*WCW 17
R CCCCC* CW
Sbjct: 178 RFCCCCCC*PCW 143
>BP033137
Length = 419
Score = 29.3 bits (64), Expect = 1.6
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = -1
Query: 459 YLLTNLILLLFPLLLLLILWLDQTHQVILEDFHLISHLGRSLLLHL 504
YL+T+L LLF LL L L QT + L L++ L +LLLHL
Sbjct: 395 YLVTDLNPLLFLLLWL*TLK*HQTSLMNLRGHPLVTRLK*NLLLHL 258
>TC8286 homologue to GB|AAD14482.1|4249385|T2K10 T2K10.11 {Arabidopsis
thaliana;}, partial (6%)
Length = 671
Score = 29.3 bits (64), Expect = 1.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 8 WCCCCC*WCW 17
WCCC C*W W
Sbjct: 354 WCCC*C*WWW 325
>TC14125 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(40%)
Length = 601
Score = 28.9 bits (63), Expect = 2.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2
Query: 9 CCCCC*WCW 17
CCCCC +CW
Sbjct: 273 CCCCCCYCW 247
>TC14126 similar to UP|Q84UB0 (Q84UB0) Transcription factor Myb1, partial
(44%)
Length = 1500
Score = 28.9 bits (63), Expect = 2.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2
Query: 9 CCCCC*WCW 17
CCCCC +CW
Sbjct: 275 CCCCCCYCW 249
>AV766700
Length = 365
Score = 28.9 bits (63), Expect = 2.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 8 WCCCCC*W 15
WCCCCC W
Sbjct: 346 WCCCCCCW 323
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.357 0.158 0.571
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,015,285
Number of Sequences: 28460
Number of extensions: 182865
Number of successful extensions: 5763
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 3458
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 4419
length of query: 513
length of database: 4,897,600
effective HSP length: 94
effective length of query: 419
effective length of database: 2,222,360
effective search space: 931168840
effective search space used: 931168840
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC136504.3