TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136502.1 + phase: 0 
         (64 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14260 weakly similar to UP|AAR24673 (AAR24673) At5g62200, part...    74  7e-15
TC10551 similar to UP|AAR24673 (AAR24673) At5g62200, partial (42%)     69  1e-13
TC7968 similar to UP|Q39360 (Q39360) (Clone PIS63-1), partial (15%)    26  1.7
AV777500                                                               25  2.9
TC18130                                                                25  2.9
AV780444                                                               24  5.0
AV777398                                                               24  6.5

>TC14260 weakly similar to UP|AAR24673 (AAR24673) At5g62200, partial (51%)
          Length = 788

 Score = 73.6 bits (179), Expect = 7e-15
 Identities = 30/58 (51%), Positives = 38/58 (64%)
 Frame = +2

Query: 4   FDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHC 61
           FD++G CL  IC LYL+R GSNGW+P  V   +Y Y P+ F YN  +PE    GFN+C
Sbjct: 383 FDVIGPCLGKICHLYLYRSGSNGWVPERVIVDDYYYGPIAFEYNIDIPEGGGLGFNYC 556


>TC10551 similar to UP|AAR24673 (AAR24673) At5g62200, partial (42%)
          Length = 743

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 28/59 (47%), Positives = 38/59 (63%)
 Frame = +3

Query: 3   SFDIVGQCLNDICKLYLHRVGSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHC 61
           +F I G C   IC LYL+R G +GWIP +VT   Y   PV FYYN ++P  + +GF++C
Sbjct: 339 TFQINGPCTYQICYLYLYRSGYDGWIPESVTVSGYNSQPVTFYYNAFIPAGIWFGFDYC 515


>TC7968 similar to UP|Q39360 (Q39360) (Clone PIS63-1), partial (15%)
          Length = 1193

 Score = 25.8 bits (55), Expect = 1.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 23  GSNGWIPTTVTAYNYGYPPVKFYYNTYVPENVDYGFNHCN 62
           G N + P     YN      KF+YN     N +Y FN+ N
Sbjct: 541 GGNKYNPRENQNYNQ-----KFFYNNNAAANENYNFNNNN 645


>AV777500 
          Length = 469

 Score = 25.0 bits (53), Expect = 2.9
 Identities = 10/35 (28%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
 Frame = +2

Query: 5   DIVGQCLNDICKLYLHRVGS--NGWIPTTVTAYNY 37
           +++G C  ++C +YLH+V S  +  +P T   + +
Sbjct: 113 ELLGVC*IELCTIYLHQVRSKNSSQMPITKAGFTF 217


>TC18130 
          Length = 669

 Score = 25.0 bits (53), Expect = 2.9
 Identities = 10/35 (28%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
 Frame = -3

Query: 5   DIVGQCLNDICKLYLHRVGS--NGWIPTTVTAYNY 37
           +++G C  ++C +YLH+V S  +  +P T   + +
Sbjct: 376 ELLGVC*IELCTIYLHQVRSKNSSQMPITKAGFTF 272


>AV780444 
          Length = 515

 Score = 24.3 bits (51), Expect = 5.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 29 PTTVTAYNYGYPPVKFYY 46
          PT + AYNY +  + FY+
Sbjct: 1  PTELKAYNYDHDSLSFYF 54


>AV777398 
          Length = 257

 Score = 23.9 bits (50), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 11 LNDICKLYLHRVGSNGWI 28
          +NDI K Y+  V  NGWI
Sbjct: 62 VNDIIKSYIFDVLLNGWI 9


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.144    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,541,215
Number of Sequences: 28460
Number of extensions: 19730
Number of successful extensions: 100
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of query: 64
length of database: 4,897,600
effective HSP length: 40
effective length of query: 24
effective length of database: 3,759,200
effective search space: 90220800
effective search space used: 90220800
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)