TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136472.17 - phase: 0 
         (124 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8687 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, parti...   198  3e-52
TC18929                                                               125  2e-30
BU494238                                                              117  6e-28
BP071156                                                               83  2e-17
BP060635                                                               54  6e-09
AV771560                                                               28  0.60
BP039415                                                               26  2.3
TC14519                                                                25  3.0
TC9085 similar to UP|Q9M724 (Q9M724) Branched chain alpha-keto a...    25  3.9
TC11924 similar to UP|P93484 (P93484) BP-80 vacuolar sorting rec...    25  3.9
TC13302                                                                24  6.6
AI967865                                                               24  6.6
TC13656                                                                24  8.7
AV409025                                                               24  8.7

>TC8687 similar to UP|Q9SXL2 (Q9SXL2) Serine decarboxylase, partial (80%)
          Length = 1644

 Score =  198 bits (503), Expect = 3e-52
 Identities = 92/106 (86%), Positives = 98/106 (91%)
 Frame = +1

Query: 8    FEKEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV 67
            F+KEV KCLRNAHYFKDRL+EAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV
Sbjct: 1192 FQKEVLKCLRNAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV 1371

Query: 68   VVMPNVTIEKLDDFLNELVQKRATWFEYGTFQPYCIASDVGENSCL 113
            VVMPN+TIEKLDDFL EL+Q RATWF+ G + PYCIASDVGE  CL
Sbjct: 1372 VVMPNITIEKLDDFLEELMQNRATWFQDGKYTPYCIASDVGEKDCL 1509


>TC18929 
          Length = 563

 Score =  125 bits (314), Expect = 2e-30
 Identities = 57/100 (57%), Positives = 76/100 (76%)
 Frame = +3

Query: 13  QKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPN 72
           Q C+ NA +  D+L + GIGAM NE S+TV+FERP D++F+RKW L+C+GN+AHVVVM +
Sbjct: 6   QICITNASHLLDKLHDNGIGAMRNEFSNTVIFERPLDDDFVRKWNLSCEGNVAHVVVMQH 185

Query: 73  VTIEKLDDFLNELVQKRATWFEYGTFQPYCIASDVGENSC 112
           VTIE LD F++ELV KR  WF+ G  +  CIA+ VG N+C
Sbjct: 186 VTIEMLDSFVSELVNKRKVWFQDGQRKSPCIANSVGGNNC 305


>BU494238 
          Length = 448

 Score =  117 bits (293), Expect = 6e-28
 Identities = 56/100 (56%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
 Frame = +2

Query: 14  KCLRNAHYFK-DRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPN 72
           KC    H    D+L +  IGAM NE S+TVVFERP D++F+RKW L+C+GN+AHVVVM +
Sbjct: 20  KCASQKHVTSLDKLHDNDIGAMRNEFSNTVVFERPPDDDFVRKWNLSCEGNVAHVVVMQH 199

Query: 73  VTIEKLDDFLNELVQKRATWFEYGTFQPYCIASDVGENSC 112
           VTIE LD F++ELV KR+ WF+ G  +P CIA +VG  +C
Sbjct: 200 VTIEMLDSFVSELVTKRSFWFQGGQRKPPCIADNVGGKNC 319


>BP071156 
          Length = 404

 Score = 82.8 bits (203), Expect = 2e-17
 Identities = 34/61 (55%), Positives = 48/61 (77%)
 Frame = -3

Query: 52  FIRKWQLACKGNIAHVVVMPNVTIEKLDDFLNELVQKRATWFEYGTFQPYCIASDVGENS 111
           F+RKW L+C+G++AHVVVM +VTIE +D F+ ELV+KR+ WF+ G  +P CIA+ VG  +
Sbjct: 402 FVRKWSLSCEGDVAHVVVMKHVTIEMIDSFVGELVKKRSIWFQGGQIKPPCIANTVGREN 223

Query: 112 C 112
           C
Sbjct: 222 C 220


>BP060635 
          Length = 360

 Score = 54.3 bits (129), Expect = 6e-09
 Identities = 26/52 (50%), Positives = 36/52 (69%)
 Frame = -3

Query: 65  AHVVVMPNVTIEKLDDFLNELVQKRATWFEYGTFQPYCIASDVGENSCLAYV 116
           AHVVVM +VTIE +D F++ELV +R  WF+ G   P CIA+++G  +C   V
Sbjct: 358 AHVVVMQHVTIEMIDSFVSELVNQRTIWFQDGL--PPCIANNIGGENCACAV 209


>AV771560 
          Length = 445

 Score = 27.7 bits (60), Expect = 0.60
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 74  TIEKLDDFLNELVQKRATWFEY 95
           T  KLDDF NE+V+ R +++ Y
Sbjct: 242 TSRKLDDFFNEIVEGRKSFWAY 177


>BP039415 
          Length = 449

 Score = 25.8 bits (55), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 49  DEEFIRKWQLACKGNIAHV 67
           DE F R+W+L C+   AH+
Sbjct: 405 DESFSRRWKLRCQLQAAHL 349


>TC14519 
          Length = 1095

 Score = 25.4 bits (54), Expect = 3.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 47  PHDEEFIRKWQLACKGNIAHVVVMP 71
           P    F R W+L C GN  HV  +P
Sbjct: 268 PRRSRFHRLWELHCTGNP*HVRGLP 342


>TC9085 similar to UP|Q9M724 (Q9M724) Branched chain alpha-keto acid
           dehydrogenase E2 subunit, partial (45%)
          Length = 912

 Score = 25.0 bits (53), Expect = 3.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 91  TWFEYGTFQPYCIA 104
           T+F +GT +PYC+A
Sbjct: 358 TFFMFGTTRPYCVA 317


>TC11924 similar to UP|P93484 (P93484) BP-80 vacuolar sorting receptor,
           partial (41%)
          Length = 783

 Score = 25.0 bits (53), Expect = 3.9
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +3

Query: 61  KGNIAHVVVMPNVTIE------KLDDFLNELVQKRATWFEYGTFQPYCIASDVGENSCL 113
           KG+   V ++P + +       KL+     +++   + FE  T    C++SDV  N CL
Sbjct: 42  KGSRGDVTILPTLVVNNRQYRGKLEK--GAVMKAICSGFEETTEPAVCLSSDVETNECL 212


>TC13302 
          Length = 533

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 12/37 (32%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
 Frame = -2

Query: 67  VVVMPNVTIEKLDDF--LNELVQKRATWFEYGTFQPY 101
           +V+   V++  +DD   LN +V+K    + YG   PY
Sbjct: 466 MVIKGGVSLASVDDVITLNRVVEKPCIDYRYGENSPY 356


>AI967865 
          Length = 326

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = +2

Query: 61  KGNIAHVVVMPNVTIEKLDDFLNEL-----VQKRATWFEYGTFQPYCIASDVGENSCL 113
           +G+   V ++P + I  +  +  +L     ++     F+  T  P C++ D+  N CL
Sbjct: 71  RGSRGDVTILPTLVINNVQ-YTGKLERTPVLKAVCAGFKESTEPPVCLSGDIETNECL 241


>TC13656 
          Length = 656

 Score = 23.9 bits (50), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (74%)
 Frame = -1

Query: 91  TWFEYGTFQPYCIASD 106
           +WF+  T+Q  C++SD
Sbjct: 239 SWFQKATYQVACVSSD 192


>AV409025 
          Length = 434

 Score = 23.9 bits (50), Expect = 8.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 45  ERPHDEEFIRKWQLACKGNIAHVVVMPNVTIEKL 78
           ++PH+E   R+ +  C G++      PN T ++L
Sbjct: 178 KKPHEEREARE*R*ECDGSMERAKPSPNNTSDRL 77


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,403,143
Number of Sequences: 28460
Number of extensions: 27880
Number of successful extensions: 179
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of query: 124
length of database: 4,897,600
effective HSP length: 79
effective length of query: 45
effective length of database: 2,649,260
effective search space: 119216700
effective search space used: 119216700
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)