TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136472.16 - phase: 0 
         (212 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17335 similar to UP|Q9M2C0 (Q9M2C0) Nodulin-like protein, part...   290  1e-79
TC10875 similar to UP|NO21_SOYBN (P16313) Nodulin 21 (N-21), par...   158  8e-40
AV427050                                                              132  4e-32
BP032181                                                               42  1e-04
TC20016 similar to UP|Q9MAW5 (Q9MAW5) Ribosomal protein L29, com...    31  0.18
AV425570                                                               27  3.5
AV416013                                                               26  4.5
TC11333 similar to GB|AAO42855.1|28416649|BT004609 At4g10170 {Ar...    26  4.5
TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein...    25  7.7
AU089035                                                               25  7.7

>TC17335 similar to UP|Q9M2C0 (Q9M2C0) Nodulin-like protein, partial (85%)
          Length = 911

 Score =  290 bits (742), Expect = 1e-79
 Identities = 155/200 (77%), Positives = 170/200 (84%), Gaps = 9/200 (4%)
 Frame = +3

Query: 17  SKVYNMDVEKK---GEEENDEK------DYTQRAQWLRAAVLGANDGLLSTASLMMGVGA 67
           SKV+N+DVE +    EE+  +       DYTQRAQWLRAAVLGANDGLLSTASLMMGVGA
Sbjct: 69  SKVFNIDVEGQLAHAEEDGGDALSHSAHDYTQRAQWLRAAVLGANDGLLSTASLMMGVGA 248

Query: 68  VTKDVKTMILTGIAGLVAGACSMAIGEFVSVYSQYDIEFAQMKRQGNISQKDKLPNPYYA 127
           V KDV+TMILTGIAGLVAGACSMAIGEFVSVYSQYDIE AQMKR+GN   KDKLPNPYYA
Sbjct: 249 VKKDVRTMILTGIAGLVAGACSMAIGEFVSVYSQYDIELAQMKREGNTQNKDKLPNPYYA 428

Query: 128 AFASAIAFAVGAFVPLLGAAFVKDYKVRLGVVVGVVSLALFGFGLLSAVLGKAPLVKSSL 187
           A ASA+AFAVGA VPLL AAF+ +YKVR+GVVV  V+LAL  FG LSA LGK+PLVKSSL
Sbjct: 429 ALASALAFAVGAGVPLLAAAFITEYKVRIGVVVAAVTLALVVFGGLSAFLGKSPLVKSSL 608

Query: 188 RVLIGGWLAMSLTFGLTKLV 207
           RVL GGWLAM++TFGLTKLV
Sbjct: 609 RVLFGGWLAMAVTFGLTKLV 668


>TC10875 similar to UP|NO21_SOYBN (P16313) Nodulin 21 (N-21), partial (58%)
          Length = 581

 Score =  158 bits (399), Expect = 8e-40
 Identities = 86/168 (51%), Positives = 109/168 (64%), Gaps = 12/168 (7%)
 Frame = +1

Query: 1   MAEIQHHHAATLARSESKVYNMDVEKKGEEENDEKDYTQRAQWLRAAVLGANDGLLSTAS 60
           MA    +H  T+    +   + + + +  +     DY QRAQWLRAAVLGANDGL+S AS
Sbjct: 73  MAAGAPNHVGTIPNPANGTTDQNKQTQVTDVPRVVDYWQRAQWLRAAVLGANDGLVSVAS 252

Query: 61  LMMGVGAVTKDVKTMILTGIAGLVAGACSMAIGEFVSVYSQYDIEFAQMKR------QGN 114
           LMMGVGAV KD K M+L G AGLVAGAC MAIGEFVSV++QY++E  QMKR      QG 
Sbjct: 253 LMMGVGAVNKDAKAMLLAGFAGLVAGACGMAIGEFVSVFTQYEVEVGQMKRDMIKSEQGE 432

Query: 115 ------ISQKDKLPNPYYAAFASAIAFAVGAFVPLLGAAFVKDYKVRL 156
                 + ++  +PNP  AA ASA +F++G  VPLL  +FV  YK+RL
Sbjct: 433 RDLEMAMEKRKSIPNPMQAALASAFSFSIGGLVPLLSGSFVSVYKIRL 576


>AV427050 
          Length = 420

 Score =  132 bits (332), Expect = 4e-32
 Identities = 67/90 (74%), Positives = 77/90 (85%), Gaps = 2/90 (2%)
 Frame = +1

Query: 25  EKKGEEENDEK--DYTQRAQWLRAAVLGANDGLLSTASLMMGVGAVTKDVKTMILTGIAG 82
           E +G EE++    DY+QRAQWLRAAVLGANDGL+S ASLMMGVGAV +DV  M+L G AG
Sbjct: 112 ESEGVEESNNNYIDYSQRAQWLRAAVLGANDGLVSVASLMMGVGAVKEDVSAMLLAGFAG 291

Query: 83  LVAGACSMAIGEFVSVYSQYDIEFAQMKRQ 112
           LVAGACSMAIGEFVSVY+QYDIE AQ+KR+
Sbjct: 292 LVAGACSMAIGEFVSVYTQYDIEIAQIKRE 381


>BP032181 
          Length = 460

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 17/25 (68%), Positives = 23/25 (92%)
 Frame = -2

Query: 183 VKSSLRVLIGGWLAMSLTFGLTKLV 207
           ++S +RVL GGWLAM++TFGLTKL+
Sbjct: 456 LRSCVRVLXGGWLAMAITFGLTKLI 382


>TC20016 similar to UP|Q9MAW5 (Q9MAW5) Ribosomal protein L29, complete
          Length = 430

 Score = 30.8 bits (68), Expect = 0.18
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = -1

Query: 150 KDYKVRLGVVVGVVSLALF---GFGLLSAVLGKAPLVKSSLRV-LIGGWLAMSL 199
           K  K+R+ +   V S  LF   GF  L  VL + PLV   LRV  +GG +AM L
Sbjct: 268 KKSKLRILIAPSVTST*LFFSDGFSTLLVVLPRVPLVPQKLRVHPLGGSVAMPL 107


>AV425570 
          Length = 420

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 25/90 (27%), Positives = 40/90 (43%), Gaps = 8/90 (8%)
 Frame = +1

Query: 86  GACSMAIGEFVSVYSQYDIEFAQM--------KRQGNISQKDKLPNPYYAAFASAIAFAV 137
           G CS+ I  F++    + +  AQ+        KR+G   +K  L    YA+   AI  A+
Sbjct: 49  GLCSLGIVPFINAQIVFQL-LAQVYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAI 225

Query: 138 GAFVPLLGAAFVKDYKVRLGVVVGVVSLAL 167
           G  + L    +V D+     V+  V+ L L
Sbjct: 226 GQVLFL--RPYVNDFSTE-WVISSVILLTL 306


>AV416013 
          Length = 309

 Score = 26.2 bits (56), Expect = 4.5
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 39  QRAQWLRAAVLGA-NDGLLSTASLMMGVGAVTKDVKTMILTGIAGLVAGACSMAIGEFVS 97
           QR + +R A+  A   GLL +    +G+G    DV+  +   +   V   C   + E++S
Sbjct: 270 QRVRVVRTALRAALGAGLLCSVQPRLGIGHAH*DVRVALRLTLGVEVGNLCKELVAEYLS 91

Query: 98  V 98
           +
Sbjct: 90  L 88


>TC11333 similar to GB|AAO42855.1|28416649|BT004609 At4g10170 {Arabidopsis
           thaliana;}, partial (14%)
          Length = 487

 Score = 26.2 bits (56), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 6/29 (20%)
 Frame = -1

Query: 37  YTQRAQWLRAAVLGAN------DGLLSTA 59
           YTQ+ QWL   VLGA       +GL+S++
Sbjct: 121 YTQQHQWLEQCVLGATTSDECFEGLISSS 35


>TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein S2,
          partial (88%)
          Length = 1134

 Score = 25.4 bits (54), Expect = 7.7
 Identities = 16/56 (28%), Positives = 26/56 (45%)
 Frame = +1

Query: 32 NDEKDYTQRAQWLRAAVLGANDGLLSTASLMMGVGAVTKDVKTMILTGIAGLVAGA 87
          N  +  T + +WL        D  +++A +       T+ V+T  +   AGLVAGA
Sbjct: 22 NSRRSLTTKPKWLNVVAEIVVDSAVASAVV------ATEAVETEAVADAAGLVAGA 171


>AU089035 
          Length = 460

 Score = 25.4 bits (54), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 PLVKSSLRVLIGGWLAMSLTFGLTKL 206
           P VK     L+  WL MSL+F LT+L
Sbjct: 325 PRVKWXXSNLLXCWLPMSLSFELTEL 402


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,888,547
Number of Sequences: 28460
Number of extensions: 28273
Number of successful extensions: 152
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of query: 212
length of database: 4,897,600
effective HSP length: 86
effective length of query: 126
effective length of database: 2,450,040
effective search space: 308705040
effective search space used: 308705040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)