BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136472.10 + phase: 0
(427 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18273 similar to AAQ06240 (AAQ06240) Tubby-like protein TULP1,... 382 e-107
TC16601 similar to PIR|S42728|S42728 phosphodiesterase (clone p4... 320 4e-88
TC19092 similar to AAQ06244 (AAQ06244) Tubby-like protein TULP10... 286 5e-78
TC16299 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pr... 241 2e-64
TC9811 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pro... 226 6e-60
TC15562 homologue to AAQ06240 (AAQ06240) Tubby-like protein TULP... 202 7e-53
AV426770 165 1e-41
TC8658 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial... 161 2e-40
TC15193 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partia... 159 1e-39
BP048535 156 5e-39
TC10623 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pr... 145 2e-35
AV417834 142 8e-35
TC9547 similar to GB|AAK98802.1|27372514|AY045774 tubby-like pro... 142 1e-34
TC16171 homologue to GB|AAM18187.1|33413451|AY092403 tubby-like ... 138 2e-33
AV778913 92 9e-26
AV418034 99 1e-21
TC11483 homologue to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, part... 99 2e-21
CB829547 61 4e-10
TC18620 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partia... 61 4e-10
BI419957 60 5e-10
>TC18273 similar to AAQ06240 (AAQ06240) Tubby-like protein TULP1, partial
(46%)
Length = 1016
Score = 382 bits (981), Expect = e-107
Identities = 194/241 (80%), Positives = 211/241 (87%), Gaps = 1/241 (0%)
Frame = +2
Query: 1 MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPE 60
MSFRSIVRDVRD FGSLSRRSFDV L GH R KS SV +LHDQPLVIQ+S WA+LPPE
Sbjct: 305 MSFRSIVRDVRDGFGSLSRRSFDVILPGHS-RSKSRSSVHELHDQPLVIQSSRWASLPPE 481
Query: 61 LLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVRSPEFCGKLTFPVSLKQPGP 120
LL DVI+RLE +E+ WP RKHVVACA+VC+SWR MCK+IV SPE GK+TFPVSLKQPG
Sbjct: 482 LLRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVSSPELSGKITFPVSLKQPGA 661
Query: 121 RDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNIS 180
RDG IQCFIKRDKSN+TYHLFLCLSPALLVENGKFLLSAKR+RRTT TEY+IS+DADNIS
Sbjct: 662 RDGHIQCFIKRDKSNMTYHLFLCLSPALLVENGKFLLSAKRSRRTTCTEYIISIDADNIS 841
Query: 181 RSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRF-SKKVSPKVPSGSYN 239
RSS+TYIGKLRSNFLGTKFIIYDTQPP +A + PPG SRRF SKKVSPKVPSGSYN
Sbjct: 842 RSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPG---RSRRFNSKKVSPKVPSGSYN 1012
Query: 240 I 240
I
Sbjct: 1013I 1015
>TC16601 similar to PIR|S42728|S42728 phosphodiesterase (clone p4-6) - mouse
{Mus musculus;}, partial (23%)
Length = 716
Score = 320 bits (819), Expect = 4e-88
Identities = 157/168 (93%), Positives = 163/168 (96%), Gaps = 2/168 (1%)
Frame = +3
Query: 262 MHSIPNSALDAGGSVPGQPELIHRSLEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNED 321
MHSIP SALDAGG+VPGQPEL+ RSL+DSFRSISFSKSLDHSIEFSS+RFSEIGGSCNED
Sbjct: 3 MHSIPASALDAGGTVPGQPELLPRSLDDSFRSISFSKSLDHSIEFSSSRFSEIGGSCNED 182
Query: 322 DDG-KMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPA-GAPTPSQP 379
DDG KMRPL+LKNKPPRWHEQL CWCLNFRGRVTVASVKNFQLIA+TQPPA GAPTPSQP
Sbjct: 183 DDGSKMRPLLLKNKPPRWHEQLLCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPTPSQP 362
Query: 380 APPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
APPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 363 APPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 506
>TC19092 similar to AAQ06244 (AAQ06244) Tubby-like protein TULP10, partial
(29%)
Length = 617
Score = 286 bits (732), Expect = 5e-78
Identities = 136/143 (95%), Positives = 141/143 (98%)
Frame = +1
Query: 1 MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPE 60
MSFRSIVRDVRDSFGSLSRRSFDV+LTGHH RGKSHGSVQDLHDQPLVIQNSCWA+LPPE
Sbjct: 190 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHH-RGKSHGSVQDLHDQPLVIQNSCWASLPPE 366
Query: 61 LLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVRSPEFCGKLTFPVSLKQPGP 120
LLFDVIRRLEESENTWP+RKHVVACA+VCQSWRNMCKDIV+SPEF GKLTFPVSLKQPGP
Sbjct: 367 LLFDVIRRLEESENTWPARKHVVACAAVCQSWRNMCKDIVKSPEFSGKLTFPVSLKQPGP 546
Query: 121 RDGIIQCFIKRDKSNLTYHLFLC 143
RDGIIQCFIKRDKSNLTYHLFLC
Sbjct: 547 RDGIIQCFIKRDKSNLTYHLFLC 615
>TC16299 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (46%)
Length = 1037
Score = 241 bits (614), Expect = 2e-64
Identities = 124/201 (61%), Positives = 147/201 (72%)
Frame = +1
Query: 227 KKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRS 286
K+VSPKVP+G+Y IA ++YELNVLG+RGPR+MHC+M SIP SA++ GG P Q E +
Sbjct: 31 KQVSPKVPTGNYPIAHISYELNVLGSRGPRRMHCVMDSIPTSAIEPGGVAPTQTEFSLNN 210
Query: 287 LEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWC 346
+ D F F +S SS + + G + DG LVLKNK PRWHEQLQCWC
Sbjct: 211 V-DMFPPFPFFRSK------SSRAENSLSGPLADKKDGT---LVLKNKSPRWHEQLQCWC 360
Query: 347 LNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYP 406
LNF GRVTVASVKNFQL+AS + + PA PEHDKIILQFGK+GKD+FTMDYRYP
Sbjct: 361 LNFHGRVTVASVKNFQLVASAE--------NGPAGPEHDKIILQFGKIGKDLFTMDYRYP 516
Query: 407 LSAFQAFAICLSSFDTKLACE 427
+SAFQAFAICLSSFDTK+ACE
Sbjct: 517 ISAFQAFAICLSSFDTKIACE 579
>TC9811 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (38%)
Length = 638
Score = 226 bits (576), Expect = 6e-60
Identities = 110/212 (51%), Positives = 154/212 (71%), Gaps = 5/212 (2%)
Frame = +2
Query: 1 MSFRSIVRDVRDSFGSLSRRSFDVKLT-GHHHRGKSHGSVQDLHDQPLVIQN----SCWA 55
MSFRS++ D R+ F+VK + G + +S +V+ + SCWA
Sbjct: 32 MSFRSMILD---------RKGFEVKFSYGTRSKSESKSDTTIKESSLMVVDDGLKQSCWA 184
Query: 56 NLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVRSPEFCGKLTFPVSL 115
N+PPELL DV+ R+E SE+ WP+RKHVVACA VC+SWR++ ++IV+ P+ KLTFP+SL
Sbjct: 185 NMPPELLRDVLMRIEASEHNWPARKHVVACAGVCRSWRDIMEEIVKPPQISTKLTFPISL 364
Query: 116 KQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMD 175
KQPGPRD ++QC+IKR++SN TY+LFL L+ A ++GKFLL+A++ R T+T+Y+IS++
Sbjct: 365 KQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQA-STDDGKFLLAARKCRHATHTDYIISLN 541
Query: 176 ADNISRSSNTYIGKLRSNFLGTKFIIYDTQPP 207
D++SR S+TYIGKLRSNFLGTKF +YD PP
Sbjct: 542 HDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPP 637
>TC15562 homologue to AAQ06240 (AAQ06240) Tubby-like protein TULP1, partial
(21%)
Length = 635
Score = 202 bits (515), Expect = 7e-53
Identities = 105/137 (76%), Positives = 115/137 (83%), Gaps = 11/137 (8%)
Frame = +1
Query: 302 HSIEFSSARFSEIGGSCNEDDD--GKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVK 359
+S EFSSARFS+I G+ NE+++ GK RPLVLKNK PRWHEQLQCWCLNFRGRVTVASVK
Sbjct: 1 NSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVK 180
Query: 360 NFQLIASTQPPA---------GAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAF 410
NFQLIA+TQP + GA PSQP P + DKIILQFGKVGKDMFTMDYRYPLSAF
Sbjct: 181 NFQLIAATQPASGGGAPPTGTGAAPPSQP-PSDPDKIILQFGKVGKDMFTMDYRYPLSAF 357
Query: 411 QAFAICLSSFDTKLACE 427
QAFAICL+SFDTKLACE
Sbjct: 358 QAFAICLTSFDTKLACE 408
>AV426770
Length = 271
Score = 165 bits (418), Expect = 1e-41
Identities = 82/89 (92%), Positives = 85/89 (95%)
Frame = +3
Query: 108 KLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTY 167
K+TFPVSLKQPG RDG IQCFIKRDKS LTYHLFLCLSPALLVENGKFLLSAKRTRRTT
Sbjct: 3 KITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTC 182
Query: 168 TEYVISMDADNISRSSNTYIGKLRSNFLG 196
TEY+ISMDADNISRSS+TYIGKLRSNFLG
Sbjct: 183 TEYIISMDADNISRSSSTYIGKLRSNFLG 269
>TC8658 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (26%)
Length = 639
Score = 161 bits (407), Expect = 2e-40
Identities = 75/105 (71%), Positives = 86/105 (81%)
Frame = +2
Query: 323 DGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPP 382
+G + LVLKNK PRWHEQLQCWCLNF+GRVTVASVKNFQL+A+ P +P
Sbjct: 50 EGSLEGLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNV------SPA 211
Query: 383 EHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
E +K+ILQFGK+GKD+FTMDYRYPLSAFQAFA+CLSSFDTK ACE
Sbjct: 212 EQEKVILQFGKIGKDIFTMDYRYPLSAFQAFALCLSSFDTKPACE 346
>TC15193 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (27%)
Length = 607
Score = 159 bits (401), Expect = 1e-39
Identities = 76/102 (74%), Positives = 83/102 (80%)
Frame = +3
Query: 326 MRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHD 385
+ PLVLKNK PRWHEQLQCWCLNF+GRVTVASVKNFQL AS P + E +
Sbjct: 63 VEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLAASVDPSHNV------SAAEQE 224
Query: 386 KIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
K+ILQFGK+GKDMFTMDYRYPLSAFQAFAICLS+FDTK ACE
Sbjct: 225 KVILQFGKIGKDMFTMDYRYPLSAFQAFAICLSTFDTKPACE 350
>BP048535
Length = 500
Score = 156 bits (395), Expect = 5e-39
Identities = 74/100 (74%), Positives = 83/100 (83%)
Frame = -3
Query: 328 PLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKI 387
PLVLKN PRWHEQLQCWCLNF+GRVTVASVKNFQL+A+ +P + E +K+
Sbjct: 495 PLVLKNXAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPCLNV------SAAEQEKV 334
Query: 388 ILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
ILQFGK+GKD+FTMDYRYPLSAFQAFAICLSSFDTK ACE
Sbjct: 333 ILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 214
>TC10623 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (27%)
Length = 692
Score = 145 bits (365), Expect = 2e-35
Identities = 64/113 (56%), Positives = 91/113 (79%)
Frame = +1
Query: 49 IQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVRSPEFCGK 108
++ SCWAN+P ELL +V+ R+E SE WP+RK VVACA VC+SWR + KDIV+ PEF K
Sbjct: 355 LRQSCWANMPQELLREVLLRIEASEEKWPARKSVVACAGVCRSWREITKDIVKKPEFSSK 534
Query: 109 LTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKR 161
LTFP+S+KQPGPR+ ++QCFI R+++ T++L+L L+ A L ++GKFLL+A++
Sbjct: 535 LTFPISVKQPGPRENLLQCFISRNRTTQTHYLYLNLTSA-LCDDGKFLLAARK 690
>AV417834
Length = 420
Score = 142 bits (359), Expect = 8e-35
Identities = 75/138 (54%), Positives = 100/138 (72%), Gaps = 4/138 (2%)
Frame = +2
Query: 157 LSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPP 216
L+AK+ RR T T+++IS+ AD+ SRSSNTYIGKLRSNFLGTKF +YD+QPP +
Sbjct: 5 LAAKKIRRATGTDFIISLVADDFSRSSNTYIGKLRSNFLGTKFTVYDSQPPHGAGMQL-- 178
Query: 217 GTGKTSRRF-SKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGS 275
++SRRF SK+VSP+VP+G+Y ++ + YELNVL TRGPR+M C M+SIP SA+ GGS
Sbjct: 179 -NSRSSRRFHSKQVSPRVPAGNYVVSTIAYELNVLRTRGPRRMQCTMNSIPISAIQEGGS 355
Query: 276 VP---GQPELIHRSLEDS 290
P P++I + S
Sbjct: 356 APTPTSFPQIIDKHFSPS 409
>TC9547 similar to GB|AAK98802.1|27372514|AY045774 tubby-like protein 3
{Arabidopsis thaliana;} , partial (22%)
Length = 558
Score = 142 bits (358), Expect = 1e-34
Identities = 68/96 (70%), Positives = 78/96 (80%)
Frame = +1
Query: 332 KNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQF 391
KNK PRWHEQLQCWCLNF GRVTVASVKNFQL+AS P G +Q + ++L F
Sbjct: 1 KNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS--PRNGVSEQAQ------ENVVLPF 156
Query: 392 GKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
GKVGKD+FTMDY+YP+SAF+AFAICLSSFDTK+ACE
Sbjct: 157 GKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 264
>TC16171 homologue to GB|AAM18187.1|33413451|AY092403 tubby-like protein 7
{Arabidopsis thaliana;}, partial (25%)
Length = 569
Score = 138 bits (347), Expect = 2e-33
Identities = 67/100 (67%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Frame = +1
Query: 330 VLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQ--PPAGAPTPSQPAPPEHDKI 387
+LKNK P WHE LQCWCLNF GRVTVASVKNFQL+A+ PP G + + +
Sbjct: 94 ILKNKAPSWHEHLQCWCLNFHGRVTVASVKNFQLVATVDRSPPGGKG--------DEETV 249
Query: 388 ILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
+LQFGKVG D+FTMDYR PLSAFQAFAICL+SF TKLACE
Sbjct: 250 LLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 369
>AV778913
Length = 493
Score = 91.7 bits (226), Expect(2) = 9e-26
Identities = 44/59 (74%), Positives = 48/59 (80%), Gaps = 2/59 (3%)
Frame = -1
Query: 307 SSARFSEIGGSCNEDDDG-KMRPLVLKNKPPRWHEQLQCWCLNFRGRVTV-ASVKNFQL 363
++ RFSEIGGSCNEDDDG KMRPL+L NKPPRWHEQLQCWCLNF G VKNFQ+
Sbjct: 481 AAQRFSEIGGSCNEDDDGSKMRPLLL*NKPPRWHEQLQCWCLNFTGTSNC*RLVKNFQV 305
Score = 42.0 bits (97), Expect(2) = 9e-26
Identities = 24/38 (63%), Positives = 27/38 (70%), Gaps = 2/38 (5%)
Frame = -3
Query: 392 GKVGKDMFT-MDYRYPLSAF-QAFAICLSSFDTKLACE 427
GK G+ + MDY+ L QAFAICLSSFDTKLACE
Sbjct: 203 GKAGEXTCSLMDYQVSLCLHSQAFAICLSSFDTKLACE 90
>AV418034
Length = 375
Score = 99.0 bits (245), Expect = 1e-21
Identities = 50/67 (74%), Positives = 57/67 (84%)
Frame = +3
Query: 1 MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPE 60
MSFR IVRDVRD FGSLSRRSF+V+L GHH RGKS+ SV +L +QP +IQNS WA+LPPE
Sbjct: 177 MSFRGIVRDVRDGFGSLSRRSFEVRLPGHH-RGKSNSSVYELKEQPPIIQNSRWASLPPE 353
Query: 61 LLFDVIR 67
LL DVIR
Sbjct: 354 LLRDVIR 374
>TC11483 homologue to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (15%)
Length = 541
Score = 98.6 bits (244), Expect = 2e-21
Identities = 54/108 (50%), Positives = 71/108 (65%), Gaps = 5/108 (4%)
Frame = +2
Query: 1 MSFRSIVRDVR---DSFGSLSRRSFDVKLTGHH--HRGKSHGSVQDLHDQPLVIQNSCWA 55
MS +SIVR++R D GS+S+R + G H R KSH + L +Q WA
Sbjct: 230 MSLKSIVREIREMRDGIGSISKRGAE----GKHWLRRTKSHIAPDVLVTPYEPVQQGQWA 397
Query: 56 NLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVRSP 103
NLPPELL D+IRR+EESE +WP R VV CASVC+SWR++ K+IV++P
Sbjct: 398 NLPPELLLDIIRRVEESETSWPDRAVVVFCASVCKSWRSITKEIVKTP 541
>CB829547
Length = 486
Score = 60.8 bits (146), Expect = 4e-10
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = +1
Query: 149 LVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGT 197
L + GKFLL+A+R R T+TEY+IS+DAD++S+ SN Y+GKLR F+ T
Sbjct: 265 LTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLR*IFITT 411
>TC18620 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (24%)
Length = 695
Score = 60.8 bits (146), Expect = 4e-10
Identities = 37/63 (58%), Positives = 48/63 (75%), Gaps = 1/63 (1%)
Frame = +1
Query: 191 RSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRF-SKKVSPKVPSGSYNIAQVTYELNV 249
RSNFLGTKF IYD+QPP A I P ++SRRF SK+VSP+VP+ +Y ++ V+YEL+V
Sbjct: 514 RSNFLGTKFNIYDSQPPHDVA-IQP--NCRSSRRFSSKQVSPRVPACNYLVSTVSYELSV 684
Query: 250 LGT 252
L T
Sbjct: 685 LCT 693
Score = 53.1 bits (126), Expect = 8e-08
Identities = 25/41 (60%), Positives = 32/41 (77%)
Frame = +2
Query: 151 ENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLR 191
E K LL+AKRTRR T T +VIS+ AD+ S+SS+ Y+GKLR
Sbjct: 89 EGNKLLLAAKRTRRATCTNFVISLAADDFSKSSSKYVGKLR 211
>BI419957
Length = 558
Score = 60.5 bits (145), Expect = 5e-10
Identities = 34/70 (48%), Positives = 39/70 (55%)
Frame = +2
Query: 357 SVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAIC 416
S KNFQL T G T ILQ G+VGK F MDYRYPL+ +QAF +C
Sbjct: 362 SAKNFQL---TLEENGKQT------------ILQLGRVGKSKFVMDYRYPLTGYQAFCMC 496
Query: 417 LSSFDTKLAC 426
L+S D KL C
Sbjct: 497 LASIDAKLCC 526
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,765,522
Number of Sequences: 28460
Number of extensions: 146593
Number of successful extensions: 1255
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of query: 427
length of database: 4,897,600
effective HSP length: 93
effective length of query: 334
effective length of database: 2,250,820
effective search space: 751773880
effective search space used: 751773880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC136472.10