BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136451.6 + phase: 0 /pseudo
(210 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC8956 similar to UP|Q9ZS28 (Q9ZS28) MADs-box protein, GDEF1, pa... 346 1e-96
BP037461 107 2e-24
AU252010 100 3e-22
TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, part... 89 6e-19
TC9670 homologue to UP|O64958 (O64958) CUM1, partial (65%) 51 1e-16
TC17763 similar to UP|Q7Y1U9 (Q7Y1U9) SVP-like floral repressor,... 81 1e-16
AU251498 81 1e-16
AV421179 76 4e-15
BP038947 49 9e-15
TC11647 similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein AGL62, pa... 70 4e-13
BP064158 70 4e-13
AU089354 57 2e-09
TC10229 similar to UP|O49173 (O49173) MADS-box protein NMH 7, pa... 34 0.016
BI418736 28 0.90
TC9301 similar to UP|Q7Y0Z0 (Q7Y0Z0) TPR1, complete 28 1.5
AV423302 27 2.0
TC13537 similar to GB|AAP21222.1|30102608|BT006414 At3g06035 {Ar... 27 2.6
TC15657 similar to UP|Q40977 (Q40977) Monodehydroascorbate reduc... 27 2.6
AV773558 27 2.6
AW720082 27 3.4
>TC8956 similar to UP|Q9ZS28 (Q9ZS28) MADs-box protein, GDEF1, partial
(58%)
Length = 1100
Score = 346 bits (888), Expect = 1e-96
Identities = 181/232 (78%), Positives = 194/232 (83%), Gaps = 22/232 (9%)
Frame = +2
Query: 1 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITP 60
MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYI+P
Sbjct: 137 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISP 316
Query: 61 GLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINHKLRRQIRHRIGEGGMELDDL 120
GL+TK+IIDQYQKTLGDIDLWRSHYEKMLENLKKLK+IN+KLRRQIRHR+GE G+++DDL
Sbjct: 317 GLTTKRIIDQYQKTLGDIDLWRSHYEKMLENLKKLKEINNKLRRQIRHRLGE-GLDMDDL 493
Query: 121 SFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELVRTLFL-- 178
SFQQLR LEEDM SSI KIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLEL +
Sbjct: 494 SFQQLRKLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHP 673
Query: 179 -------------------SSYLYAFCQHHSHLNL-PHHHGEEGYKNDDLRL 210
+S LYAFCQHH+H+NL PHHH G DDLRL
Sbjct: 674 QFVLHDEGDPESAVALANGASNLYAFCQHHTHVNLPPHHHHVHG--EDDLRL 823
>BP037461
Length = 551
Score = 107 bits (267), Expect = 2e-24
Identities = 67/173 (38%), Positives = 105/173 (59%), Gaps = 5/173 (2%)
Frame = +2
Query: 1 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITP 60
MGRG++E+K IEN NRQVT++KRRNG+ KKA+ELSVLCDA+V+LI+FS K++E+ +
Sbjct: 8 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 187
Query: 61 GLSTKKIIDQYQK-TLGDIDLWRSHYEKM----LENLKKLKDINHKLRRQIRHRIGEGGM 115
S K +++YQK G + S E + + KLK L+R R+ +GE
Sbjct: 188 S-SMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGE--- 355
Query: 116 ELDDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNL 168
+L L+ ++L SLE ++SS+ +IR + + + ++K L + N +L
Sbjct: 356 DLGPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSL 514
>AU252010
Length = 328
Score = 99.8 bits (247), Expect = 3e-22
Identities = 48/113 (42%), Positives = 81/113 (71%)
Frame = +1
Query: 12 ENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQY 71
EN +NRQVTYSKR+NGI KKA E++VLCDA+VSLI+F+ + KMH+YI+P + ++++Y
Sbjct: 1 ENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLVDMLERY 180
Query: 72 QKTLGDIDLWRSHYEKMLENLKKLKDINHKLRRQIRHRIGEGGMELDDLSFQQ 124
KT G LW + +E + +++LK N ++ ++RH G+ +++ L++++
Sbjct: 181 HKTSGK-RLWDAKHENLNGEIERLKKENDGMQIELRHLKGD---DINSLNYKE 327
>TC17725 homologue to UP|Q8LLR2 (Q8LLR2) MADS-box protein 2, partial (45%)
Length = 970
Score = 89.0 bits (219), Expect = 6e-19
Identities = 42/73 (57%), Positives = 59/73 (80%)
Frame = +3
Query: 1 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITP 60
MGRG++E+K IEN NRQVT++KRRNG+ KKA+ELSVLCDA+V+LI+FS K++E+ +
Sbjct: 276 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSS 455
Query: 61 GLSTKKIIDQYQK 73
S K +++YQK
Sbjct: 456 S-SMVKTLERYQK 491
>TC9670 homologue to UP|O64958 (O64958) CUM1, partial (65%)
Length = 1060
Score = 51.2 bits (121), Expect(2) = 1e-16
Identities = 40/136 (29%), Positives = 68/136 (49%), Gaps = 4/136 (2%)
Frame = +3
Query: 39 CDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDI 98
CDA+V+LI+FS +++EY S K ID+Y+K D S E + ++ D
Sbjct: 93 CDAEVALIVFSSRGRLYEYANN--SVKATIDRYKKACSDSSGAGSASEANAQFYQQEAD- 263
Query: 99 NHKLRRQIRHRIGEG----GMELDDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTC 154
KLR QI + G L ++ ++L++LE + I++IR +K ++ +
Sbjct: 264 --KLRVQISNLQNNNRQMMGESLGSMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYM 437
Query: 155 RKKVRSLEQMNGNLLL 170
+K R ++ N N LL
Sbjct: 438 QK--REIDLHNNNQLL 479
Score = 50.4 bits (119), Expect(2) = 1e-16
Identities = 24/31 (77%), Positives = 27/31 (86%)
Frame = +1
Query: 8 IKLIENPTNRQVTYSKRRNGIFKKAHELSVL 38
IK IEN TNRQVT+ KRRNG+ KKA+ELSVL
Sbjct: 1 IKRIENTTNRQVTFCKRRNGLLKKAYELSVL 93
>TC17763 similar to UP|Q7Y1U9 (Q7Y1U9) SVP-like floral repressor, partial
(35%)
Length = 737
Score = 81.3 bits (199), Expect = 1e-16
Identities = 41/71 (57%), Positives = 54/71 (75%)
Frame = +3
Query: 1 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITP 60
M R KI+IK I+N T RQVT+SKRR G+FKKA ELSVLCDA V+L++FS K+ EY
Sbjct: 501 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALVVFSSTGKLFEY--S 674
Query: 61 GLSTKKIIDQY 71
LS K+I++++
Sbjct: 675 NLSMKEILERH 707
>AU251498
Length = 342
Score = 81.3 bits (199), Expect = 1e-16
Identities = 39/49 (79%), Positives = 45/49 (91%)
Frame = +3
Query: 1 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFS 49
MGRGKIEIK IEN TNRQVT+ KRRNG+ KKA+ELSVLCDA+V+LI+FS
Sbjct: 45 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS 191
>AV421179
Length = 207
Score = 76.3 bits (186), Expect = 4e-15
Identities = 38/69 (55%), Positives = 53/69 (76%)
Frame = +3
Query: 1 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITP 60
M R +I+IK I+N ++RQVT+SKRR G+FKKA ELS LCDA ++LI+FS NK+ EY +
Sbjct: 6 MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATNKLFEYASS 185
Query: 61 GLSTKKIID 69
S +K+I+
Sbjct: 186--SIQKVIE 206
>BP038947
Length = 492
Score = 49.3 bits (116), Expect(2) = 9e-15
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -3
Query: 150 RTDTCRKKVRSLEQMNGNLLLEL 172
RTDTCRKKVRSLEQMNGNLLLEL
Sbjct: 490 RTDTCRKKVRSLEQMNGNLLLEL 422
Score = 45.8 bits (107), Expect(2) = 9e-15
Identities = 22/33 (66%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Frame = -2
Query: 179 SSYLYAFCQHHSHLNL-PHHHGEEGYKNDDLRL 210
+S LYAFCQHH+H+NL PHHH G DDLRL
Sbjct: 386 ASNLYAFCQHHTHVNLPPHHHHVHG--EDDLRL 294
>TC11647 similar to UP|Q7X9H7 (Q7X9H7) MADS-box protein AGL62, partial (25%)
Length = 843
Score = 69.7 bits (169), Expect = 4e-13
Identities = 33/71 (46%), Positives = 51/71 (71%)
Frame = +1
Query: 1 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITP 60
+GR KIE+K + N +N QVT+SKRR+G+FKKA EL +LCD +++L++FS K+ + P
Sbjct: 85 LGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCILCDVEIALVVFSPGEKVFSFGHP 264
Query: 61 GLSTKKIIDQY 71
S + +I +Y
Sbjct: 265 --SVEAVIKRY 291
>BP064158
Length = 394
Score = 69.7 bits (169), Expect = 4e-13
Identities = 33/53 (62%), Positives = 43/53 (80%)
Frame = +3
Query: 1 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNK 53
MGR K++ + +EN TNRQVT+SKRRNG+ KKA+ELSVLC V+LIMFS + +
Sbjct: 165 MGRVKLQNQKVENTTNRQVTFSKRRNGLIKKAYELSVLCXFDVALIMFSPSGR 323
>AU089354
Length = 178
Score = 57.4 bits (137), Expect = 2e-09
Identities = 25/50 (50%), Positives = 38/50 (76%)
Frame = +3
Query: 27 GIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLG 76
GI KKA E++VLC A+VSLI F+ + KMH+YI P ++ +++++Y KT G
Sbjct: 3 GILKKAIEITVLCXAQVSLIXFAASGKMHDYIRPSITXVEMLERYXKTSG 152
>TC10229 similar to UP|O49173 (O49173) MADS-box protein NMH 7, partial (45%)
Length = 576
Score = 34.3 bits (77), Expect = 0.016
Identities = 15/43 (34%), Positives = 28/43 (64%)
Frame = +1
Query: 130 EDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLEL 172
++M+++ +RERK+ VI + DT RKK + +++ LL +L
Sbjct: 1 QEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDL 129
>BI418736
Length = 544
Score = 28.5 bits (62), Expect = 0.90
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 158 VRSLEQMNGNLLLELVRTLFLSSYLYAFCQHHSHLNLPHH 197
V SL ++ +LLL L++ +F S + Y + HHS ++P H
Sbjct: 18 VDSLLHLSTSLLLLLLQ-IFFSFFTYQYQHHHSPQSIPTH 134
>TC9301 similar to UP|Q7Y0Z0 (Q7Y0Z0) TPR1, complete
Length = 1288
Score = 27.7 bits (60), Expect = 1.5
Identities = 20/85 (23%), Positives = 41/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 10 LIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMH-EYITPGLSTKKII 68
++++P RQV + N + H + + +K+ ++ + +M + G S +K+I
Sbjct: 963 ILQDPVMRQVLVDFQENPKAAQDHAKNPMVMSKIQKLISAGIVQMK*IMMEAGNSCEKVI 1142
Query: 69 DQYQKTLGDIDLWRSHYEKMLENLK 93
D + + L R +EKML N +
Sbjct: 1143 DHCSHVISILHLNRLDWEKMLVNFE 1217
>AV423302
Length = 452
Score = 27.3 bits (59), Expect = 2.0
Identities = 22/71 (30%), Positives = 37/71 (51%), Gaps = 5/71 (7%)
Frame = +1
Query: 68 IDQYQKTLGDI---DLWRSHYEKMLENLKKLKDI--NHKLRRQIRHRIGEGGMELDDLSF 122
+DQ + T+ DL R K + K KDI NH++R++ ++GE ++L
Sbjct: 199 VDQTRNTMSSSNIRDLQRELENKANDLSKLQKDIAKNHQVRKKYTVQLGE-----NELVL 363
Query: 123 QQLRSLEEDMN 133
++L L+ED N
Sbjct: 364 KELDLLKEDAN 396
>TC13537 similar to GB|AAP21222.1|30102608|BT006414 At3g06035 {Arabidopsis
thaliana;} , partial (19%)
Length = 765
Score = 26.9 bits (58), Expect = 2.6
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -1
Query: 178 LSSYLYAFCQHHSHLNLPH 196
LSS+ YAF +H+HL L H
Sbjct: 762 LSSHFYAFPFYHTHLKLVH 706
>TC15657 similar to UP|Q40977 (Q40977) Monodehydroascorbate reductase ,
partial (48%)
Length = 915
Score = 26.9 bits (58), Expect = 2.6
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Frame = -2
Query: 154 CRKKVRSLEQMNGNLLLELVRTLFLSSY----------LYAFCQHHSHLN-LPHHH 198
CR+++ +QMNGN +E T L S+ C+H H+ HH
Sbjct: 428 CRRRIAKTDQMNGNRSMEDNHTPLLFSHPQLP*WPSQPAQLICEHGQHVQPFSTHH 261
>AV773558
Length = 469
Score = 26.9 bits (58), Expect = 2.6
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +3
Query: 161 LEQMNGNLLLELVRTLFLSS------YLYAFCQHHSHLNLPHHHGEEGY 203
LE NG L+ + T F+ + + + C HH H + HHH Y
Sbjct: 225 LEWGNGFRNLQSILTSFIKNKTLLLLHPHHLCSHHHHHHHHHHHHHPHY 371
>AW720082
Length = 304
Score = 26.6 bits (57), Expect = 3.4
Identities = 13/45 (28%), Positives = 23/45 (50%)
Frame = +3
Query: 154 CRKKVRSLEQMNGNLLLELVRTLFLSSYLYAFCQHHSHLNLPHHH 198
C +++ + +Q+ N L RT+ + +HH HL+ P HH
Sbjct: 69 CSRRLNNGDQIGNNTTLRQGRTILPGTANPQ--EHHRHLHRPIHH 197
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,714,557
Number of Sequences: 28460
Number of extensions: 48318
Number of successful extensions: 531
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of query: 210
length of database: 4,897,600
effective HSP length: 86
effective length of query: 124
effective length of database: 2,450,040
effective search space: 303804960
effective search space used: 303804960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC136451.6